Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1100 ATGGGCAACGGCGGCGGCGAGTACGTGTATCCAACGGCGGCGGAGGGCGGAGGCGGCCGAGAGAGGCTGAACAGGGCGGCGATTCCGCCGGCCCAGGCGTTCGCGAAGTCGTTGAAGAACTCCCTGAAGGAGACGTTCTTCCCGGACGACCCGCTCCGGCAGTTCAAGAACCAGCCGGCGGCGAGGAGGGTGGCGTTGGGGCTGCAGTATTTCTTTCCGGCGGTGGAGTGGGGCCCGCGTTACAATTGGGGGCTTTTGAAATCGGATCTTGTCTCCGGCGTCACCATTGCTAGTTTGGCCATTCCTCAGGGGATTAGCTACGCCAAGCTTGCTAATTTGCCCCCCATTCTTGGCCTTTATTCGAGTTTTATTCCGCCGCTGATTTACGCAATGATGGGAAGCTCAAAGGACTTGGCCGTGGGGACGGTGGCGGTGGCGTCGATGTTGACCGCCGCCATGTTAGGGGCGGAGGTCAACGCCGCCCAAAACCCCACTCTTTATCTCCACCTTGCCTTCACCGCCACCTTCTTCGCCGGAGTTTTCCAAGCCTCCTTGGGCCTCTTGAGGCTAGGGTTCATCGTGGATTTTTTGTCACATGCAACCATAGTTGGGTTCATGGCGGGTGCAGCCACGGTGGTGTGCCTGCAGCAGCTCAAAGGCATCCTCGGTCTAACCCATTTCACCCATGCGACCGATCTCATCTCGGTCCTTCGCTCGGTCTTCACTCAAGTCAATCAGTGGAGATGGGAAAGTGGGGTCTTGGGATGCTGTTTTCTCTTTTTCCTTCTCGTCACCAGATATTTTAGCAAGAAAAAGCCAAAGTTCTTTTGGATATCAGCAATGGCTCCTTTGACGTCAGTAATTCTTGGAAGCCTTTTAGTGTTCCTCACTCATGCAGAAAAACACGGCGTCGAAGTGATTGGTGAGTTGAAGAAAGGGCTAAATCCAGTGTCCATTACAGATTTAGTATTCGTGTCGCCTTATCTTTCTACTGCCATTAAAACTGGCATCATCACTGGCGTCATTGCTCTTGCGGAAGGAATAGCAGTGGGAAGAAGCTTTGCAATGTTCAAGCATTACAACATTGATGGCAACAAGGAAATGGTAGCCATTGGCACCATGAACATGGTCGGCTCTTGCTTTTCTTGCTATCTCACAACAGGCCCATTTTCGCGATCGGCTGTGAACTACAATGCAGGCTGCAAAACGGCAGTATCCAACGTAGTAATGGCGATTGCAGTGATGCTGACGCTGCTGTTCTTGACTCCCCTGTTCCACTACACTCCTCTTGTTGTTCTTTCTTCCATTATCATTTCCGCCATGCTCGGCCTCATCGATTACGATGCCGCCATTCACTTGTGGAAGGTTGATAAGTTCGATTTCCTCGTATGTATTGGCGCTTTTGCTGGTGTTGTCTTTGGCAGTGTTGAAATTGGCTTGGTCATTGCGGTGGCGATATCTGTACTCAGACTACTTTTGTTTGTCGCAAGGCCGAGGACGCTTGTGCTCGGAAACCTTCCTAATTCCACTGTTTATAGGAACGTCGAGCAATACCCGAATGCCATTAATGTTCCCAGCATTCTCATACTCGAGATCGACGCTCCCATTTACTTTGCTAATTCCAGCTACTTGAGAGAAAGGATTATAAGGTGGGTTGATGAAGAGGAAGACAGGATAAAAGCTTCCGGTGAAAGTACCTTACAATATGTAGTATTGGACATGAGTGCTGTTGGAAACATCGATACGAGCGGAATAAGCATGTTTGAAGAGATCAAGAAGATTTTTGACAGAAGGGGGTTGAAGTTAGTTTTGGCCAACCCTGGAGCTGAGGTGATGAAAAAGCTGGACAAGGGCAATTTCATCGACAGCCTCGGACATGAATGGATCTATCTTTCGGTCGCGGAAGCTGTAGCAGGCTGCAACTATATGCTTCATTCCTGCAAACTAAACTCTATAACTGATGAGAAAGCAGAGCCATGGAACAGTGTCTAA 1992 50.2 MGNGGGEYVYPTAAEGGGGRERLNRAAIPPAQAFAKSLKNSLKETFFPDDPLRQFKNQPAARRVALGLQYFFPAVEWGPRYNWGLLKSDLVSGVTIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSKDLAVGTVAVASMLTAAMLGAEVNAAQNPTLYLHLAFTATFFAGVFQASLGLLRLGFIVDFLSHATIVGFMAGAATVVCLQQLKGILGLTHFTHATDLISVLRSVFTQVNQWRWESGVLGCCFLFFLLVTRYFSKKKPKFFWISAMAPLTSVILGSLLVFLTHAEKHGVEVIGELKKGLNPVSITDLVFVSPYLSTAIKTGIITGVIALAEGIAVGRSFAMFKHYNIDGNKEMVAIGTMNMVGSCFSCYLTTGPFSRSAVNYNAGCKTAVSNVVMAIAVMLTLLFLTPLFHYTPLVVLSSIIISAMLGLIDYDAAIHLWKVDKFDFLVCIGAFAGVVFGSVEIGLVIAVAISVLRLLLFVARPRTLVLGNLPNSTVYRNVEQYPNAINVPSILILEIDAPIYFANSSYLRERIIRWVDEEEDRIKASGESTLQYVVLDMSAVGNIDTSGISMFEEIKKIFDRRGLKLVLANPGAEVMKKLDKGNFIDSLGHEWIYLSVAEAVAGCNYMLHSCKLNSITDEKAEPWNSV 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34958780 34971865 + Sed0010590.1 Sed09g1100 725864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1100 663 CDD STAS_SulP_like_sulfate_transporter 518 633 - -
Sed09g1100 663 FunFam Sulfate transporter 31 497 643 - -
Sed09g1100 663 PANTHER SULFATE TRANSPORTER 42 640 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed09g1100 663 SUPERFAMILY SpoIIaa-like 522 640 IPR036513 -
Sed09g1100 663 ProSiteProfiles STAS domain profile. 517 640 IPR002645 -
Sed09g1100 663 ProSitePatterns SLC26A transporters signature. 115 136 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Sed09g1100 663 Pfam Sulfate permease family 86 466 IPR011547 GO:0016020(InterPro)
Sed09g1100 663 NCBIfam sulfate permease 73 636 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed09g1100 663 Gene3D STAS domain 497 642 IPR036513 -
Sed09g1100 663 Pfam STAS domain 518 636 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1339 Sed-Chr2:49724196 Sed09g1100 Sed-Chr9:34958780 1.30E-257 dispersed
Sed07g1496 Sed-Chr7:11746168 Sed09g1100 Sed-Chr9:34958780 6.30E-195 dispersed
Sed07g1497 Sed-Chr7:11746168 Sed09g1100 Sed-Chr9:34958780 3.10E-183 dispersed
Sed09g1100 Sed-Chr9:34958780 Sed12g1857 Sed-Chr12:29818860 2.90E-193 dispersed
Sed06g0246 Sed-Chr6:2020216 Sed09g1100 Sed-Chr9:34958780 1.60E-199 transposed
Sed07g1733 Sed-Chr7:16184139 Sed09g1100 Sed-Chr9:34958780 4.50E-154 transposed
Sed12g1415 Sed-Chr12:11758550 Sed09g1100 Sed-Chr9:34958780 3.80E-196 transposed
Sed12g0962 Sed-Chr12:5988047 Sed09g1100 Sed-Chr9:34958780 3.70E-273 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1100 K17471 - csv:101222260 1174.46