Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g1106 | ATGGATTTAATTAATGGGGGCGAGCCCGGAAACGCTACCGTAGCTAAGAGCTCTGGTAATCAATTAGCGGATATTGTTTCGGATGCGGGTTCGAAGTTGGAGACAGGAAGTAAAAGCAGCAAAGATATGGTTTTTAGGGCTGATAAGATTGATTTTAAGAATTGGGATATTCAGCTGGACAAGCACTTGAGCAGGGCTTGGTCAAGGGACAGGGAAGTGCCTGCCAAAAAGGAAGAATGGGAAATTGATTTGTCTAAACTTGATATAAGATATGTCAAGGCTCATGGAACTTATGGTACTATTTACAGAGGAAATTATGATGGCAATGATGTTGCAGTGAAAGTGCTTGATTGGGGAGAAGATGGTCTTTCCTCAGTTGCTGAAATTGCTGCTCTTCGAACATCATTTCGCCAGGAAGTTGCGGTTTGGCATAAGCTCGACCATCCCAATGTTGCAAAGTTTTTTGGTGCATCAATGGGGACGTCCAACCTTAAAATCCCTCCCCAAAACTCATCAAGGGATAGTAACCAATCTTTTCCTTCAAGGGCTTGCTGTGTTATTGTTGAGTATCTTCCATGTGGAACACTAAAGAGCTTTCTAATAAAAAATAGGAAAAGCAAACTTGCATTTAAGGTTGTGATTCAACTTGCTTTGGATCTTTCTAGAGGTTTGAGTTATCTACACTCCAAAAAGATTGTACATCGTGATATCAAAACAGAGAATGTGCTACTAGATGCCGAAAGAACTCTGAAAATTGTTGATTTTGGCGTTGCTCGAGTCGAAGCGCAGAACCCAAGGGACATGACAGGAGAGACTGGCACCCTTGGTTACATGGCCCCCGAGGTCCTTGATGGAAAACCTTATAATAGGAAATGTGATGTGTACAGTTTTGGTATATCCTTATGGGAGACATATTGCTGCGATATGCCTTACCCAGATCTGAGTTTTGCAGAAGTGTCATCTGCAGTTGTGCGACAAAACTTACGACCAGAAATCCCGAGATGCTGCCCTAGTTCCTTGGCAAATATCATGAGAAGATGTTGGGATGCAAACCCGGAAAGGCGACCGGACATGGACGAGGTCGTAAAATTGTTGGAAGCCATTGATACAAGCAAGGGAGGCGGCATGATACCAGAAGACCAGCCTTCTGGTTGTCTCTGTTTCGGTGTATCTCGTGGTCCTTAA | 1185 | 43.46 | MDLINGGEPGNATVAKSSGNQLADIVSDAGSKLETGSKSSKDMVFRADKIDFKNWDIQLDKHLSRAWSRDREVPAKKEEWEIDLSKLDIRYVKAHGTYGTIYRGNYDGNDVAVKVLDWGEDGLSSVAEIAALRTSFRQEVAVWHKLDHPNVAKFFGASMGTSNLKIPPQNSSRDSNQSFPSRACCVIVEYLPCGTLKSFLIKNRKSKLAFKVVIQLALDLSRGLSYLHSKKIVHRDIKTENVLLDAERTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGISLWETYCCDMPYPDLSFAEVSSAVVRQNLRPEIPRCCPSSLANIMRRCWDANPERRPDMDEVVKLLEAIDTSKGGGMIPEDQPSGCLCFGVSRGP | 394 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 35055861 | 35060631 | + | Sed0008930.1 | Sed09g1106 | 725870 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g1106 | 394 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 42 | 366 | IPR051681 | GO:0004674(PANTHER)|GO:0005886(PANTHER) | |
Sed09g1106 | 394 | FunFam | Kinase suppressor of Ras 1 | 76 | 170 | - | - | |
Sed09g1106 | 394 | CDD | STKc_MAP3K-like | 94 | 365 | - | - | |
Sed09g1106 | 394 | Gene3D | Transferase(Phosphotransferase) domain 1 | 191 | 376 | - | - | |
Sed09g1106 | 394 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 232 | 244 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed09g1106 | 394 | Gene3D | Phosphorylase Kinase; domain 1 | 75 | 167 | - | - | |
Sed09g1106 | 394 | ProSiteProfiles | Protein kinase domain profile. | 87 | 368 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed09g1106 | 394 | FunFam | Serine/threonine-protein kinase HT1 | 191 | 376 | - | - | |
Sed09g1106 | 394 | PRINTS | Tyrosine kinase catalytic domain signature | 188 | 201 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed09g1106 | 394 | PRINTS | Tyrosine kinase catalytic domain signature | 336 | 358 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed09g1106 | 394 | PRINTS | Tyrosine kinase catalytic domain signature | 292 | 314 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed09g1106 | 394 | PRINTS | Tyrosine kinase catalytic domain signature | 226 | 244 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed09g1106 | 394 | Pfam | Protein tyrosine and serine/threonine kinase | 95 | 364 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed09g1106 | 394 | SUPERFAMILY | Protein kinase-like (PK-like) | 69 | 365 | IPR011009 | - | |
Sed09g1106 | 394 | SMART | serkin_6 | 87 | 368 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0135 | Sed-Chr8:772472 | Sed09g1106 | Sed-Chr9:35055861 | 1.10E-144 | dispersed | |
Sed09g1106 | Sed-Chr9:35055861 | Sed12g0951 | Sed-Chr12:5923623 | 1.70E-164 | dispersed | |
Sed09g1106 | Sed-Chr9:35055861 | Sed09g1107 | Sed-Chr9:35057903 | 3.70E-167 | tandem | |
Sed12g0950 | Sed-Chr12:5923623 | Sed09g1106 | Sed-Chr9:35055861 | 1.40E-163 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79771 | PF07714 | PK_Tyr_Ser-Thr | 2.00E-56 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g1106 | - | - | - | 0.0 |