Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1106 ATGGATTTAATTAATGGGGGCGAGCCCGGAAACGCTACCGTAGCTAAGAGCTCTGGTAATCAATTAGCGGATATTGTTTCGGATGCGGGTTCGAAGTTGGAGACAGGAAGTAAAAGCAGCAAAGATATGGTTTTTAGGGCTGATAAGATTGATTTTAAGAATTGGGATATTCAGCTGGACAAGCACTTGAGCAGGGCTTGGTCAAGGGACAGGGAAGTGCCTGCCAAAAAGGAAGAATGGGAAATTGATTTGTCTAAACTTGATATAAGATATGTCAAGGCTCATGGAACTTATGGTACTATTTACAGAGGAAATTATGATGGCAATGATGTTGCAGTGAAAGTGCTTGATTGGGGAGAAGATGGTCTTTCCTCAGTTGCTGAAATTGCTGCTCTTCGAACATCATTTCGCCAGGAAGTTGCGGTTTGGCATAAGCTCGACCATCCCAATGTTGCAAAGTTTTTTGGTGCATCAATGGGGACGTCCAACCTTAAAATCCCTCCCCAAAACTCATCAAGGGATAGTAACCAATCTTTTCCTTCAAGGGCTTGCTGTGTTATTGTTGAGTATCTTCCATGTGGAACACTAAAGAGCTTTCTAATAAAAAATAGGAAAAGCAAACTTGCATTTAAGGTTGTGATTCAACTTGCTTTGGATCTTTCTAGAGGTTTGAGTTATCTACACTCCAAAAAGATTGTACATCGTGATATCAAAACAGAGAATGTGCTACTAGATGCCGAAAGAACTCTGAAAATTGTTGATTTTGGCGTTGCTCGAGTCGAAGCGCAGAACCCAAGGGACATGACAGGAGAGACTGGCACCCTTGGTTACATGGCCCCCGAGGTCCTTGATGGAAAACCTTATAATAGGAAATGTGATGTGTACAGTTTTGGTATATCCTTATGGGAGACATATTGCTGCGATATGCCTTACCCAGATCTGAGTTTTGCAGAAGTGTCATCTGCAGTTGTGCGACAAAACTTACGACCAGAAATCCCGAGATGCTGCCCTAGTTCCTTGGCAAATATCATGAGAAGATGTTGGGATGCAAACCCGGAAAGGCGACCGGACATGGACGAGGTCGTAAAATTGTTGGAAGCCATTGATACAAGCAAGGGAGGCGGCATGATACCAGAAGACCAGCCTTCTGGTTGTCTCTGTTTCGGTGTATCTCGTGGTCCTTAA 1185 43.46 MDLINGGEPGNATVAKSSGNQLADIVSDAGSKLETGSKSSKDMVFRADKIDFKNWDIQLDKHLSRAWSRDREVPAKKEEWEIDLSKLDIRYVKAHGTYGTIYRGNYDGNDVAVKVLDWGEDGLSSVAEIAALRTSFRQEVAVWHKLDHPNVAKFFGASMGTSNLKIPPQNSSRDSNQSFPSRACCVIVEYLPCGTLKSFLIKNRKSKLAFKVVIQLALDLSRGLSYLHSKKIVHRDIKTENVLLDAERTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGISLWETYCCDMPYPDLSFAEVSSAVVRQNLRPEIPRCCPSSLANIMRRCWDANPERRPDMDEVVKLLEAIDTSKGGGMIPEDQPSGCLCFGVSRGP 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35055861 35060631 + Sed0008930.1 Sed09g1106 725870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1106 394 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 42 366 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Sed09g1106 394 FunFam Kinase suppressor of Ras 1 76 170 - -
Sed09g1106 394 CDD STKc_MAP3K-like 94 365 - -
Sed09g1106 394 Gene3D Transferase(Phosphotransferase) domain 1 191 376 - -
Sed09g1106 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g1106 394 Gene3D Phosphorylase Kinase; domain 1 75 167 - -
Sed09g1106 394 ProSiteProfiles Protein kinase domain profile. 87 368 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1106 394 FunFam Serine/threonine-protein kinase HT1 191 376 - -
Sed09g1106 394 PRINTS Tyrosine kinase catalytic domain signature 188 201 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g1106 394 PRINTS Tyrosine kinase catalytic domain signature 336 358 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g1106 394 PRINTS Tyrosine kinase catalytic domain signature 292 314 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g1106 394 PRINTS Tyrosine kinase catalytic domain signature 226 244 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g1106 394 Pfam Protein tyrosine and serine/threonine kinase 95 364 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g1106 394 SUPERFAMILY Protein kinase-like (PK-like) 69 365 IPR011009 -
Sed09g1106 394 SMART serkin_6 87 368 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0135 Sed-Chr8:772472 Sed09g1106 Sed-Chr9:35055861 1.10E-144 dispersed
Sed09g1106 Sed-Chr9:35055861 Sed12g0951 Sed-Chr12:5923623 1.70E-164 dispersed
Sed09g1106 Sed-Chr9:35055861 Sed09g1107 Sed-Chr9:35057903 3.70E-167 tandem
Sed12g0950 Sed-Chr12:5923623 Sed09g1106 Sed-Chr9:35055861 1.40E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79771 PF07714 PK_Tyr_Ser-Thr 2.00E-56 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1106 - - - 0.0