Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1107 ATGATTATTCTGAATATTGCAGTGAAAGTGCTTGATTGGGGAGAAGATGGTCTTTCCTCAGTTGCTGAAATTGCTGCTCTTCGAACATCATTTCGCCAGGAAGTTGCGGTTTGGCATAAGCTCGACCATCCCAATGTTGCAAAGTTTTTTGGTGCATCAATGGGGACGTCCAACCTTAAAATCCCTCCCCAAAACTCATCAAGGGATAGTAACCAATCTTTTCCTTCAAGGGCTTGCTGTGTTATTGTTGAGTATCTTCCATGTGGAACACTAAAGAGCTTTCTAATAAAAAATAGGAAAAGCAAACTTGCATTTAAGGTTGTGATTCAACTTGCTTTGGATCTTTCTAGAGGTTTGAGTTATCTACACTCCAAAAAGATTGTACATCGTGATATCAAAACAGAGAATGTGCTACTAGATGCCGAAAGAACTCTGAAAATTGTTGATTTTGGCGTTGCTCGAGTCGAAGCGCAGAACCCAAGGGACATGACAGGAGAGACTGGCACCCTTGGTTACATGGCCCCCGAGGTCCTTGATGGAAAACCTTATAATAGGAAATGTGATGTGTACAGTTTTGGTATATCCTTATGGGAGACATATTGCTGCGATATGCCTTACCCAGATCTGAGTTTTGCAGAAGTGTCATCTGCAGTTGTGCGACAAAACTTACGACCAGAAATCCCGAGATGCTGCCCTAGTTCCTTGGCAAATATCATGAGAAGATGTTGGGATGCAAACCCGGAAAGGCGACCGGACATGGACGAGGTCGTAAAATTGTTGGAAGCCATTGATACAAGCAAGGGAGGCGGCATGATACCAGAAGACCAGCCTTCTGGTTGTCTCTGTTTCGGTGTATCTCGTGGTCCTTAA 870 43.68 MIILNIAVKVLDWGEDGLSSVAEIAALRTSFRQEVAVWHKLDHPNVAKFFGASMGTSNLKIPPQNSSRDSNQSFPSRACCVIVEYLPCGTLKSFLIKNRKSKLAFKVVIQLALDLSRGLSYLHSKKIVHRDIKTENVLLDAERTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGISLWETYCCDMPYPDLSFAEVSSAVVRQNLRPEIPRCCPSSLANIMRRCWDANPERRPDMDEVVKLLEAIDTSKGGGMIPEDQPSGCLCFGVSRGP 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35057903 35060631 + Sed0008930.2 Sed09g1107 725871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1107 289 CDD STKc_MAP3K-like 6 260 - -
Sed09g1107 289 SUPERFAMILY Protein kinase-like (PK-like) 6 260 IPR011009 -
Sed09g1107 289 Gene3D Transferase(Phosphotransferase) domain 1 86 271 - -
Sed09g1107 289 PRINTS Tyrosine kinase catalytic domain signature 187 209 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g1107 289 PRINTS Tyrosine kinase catalytic domain signature 231 253 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g1107 289 PRINTS Tyrosine kinase catalytic domain signature 121 139 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g1107 289 PRINTS Tyrosine kinase catalytic domain signature 83 96 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g1107 289 FunFam Serine/threonine-protein kinase HT1 86 271 - -
Sed09g1107 289 Pfam Protein tyrosine and serine/threonine kinase 28 259 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g1107 289 ProSiteProfiles Protein kinase domain profile. 1 263 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1107 289 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g1107 289 SMART serkin_6 4 263 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1107 289 PIRSF ILK 4 66 - -
Sed09g1107 289 PIRSF ILK 71 269 - -
Sed09g1107 289 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 6 261 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Sed09g1107 289 Gene3D Phosphorylase Kinase; domain 1 4 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1107 Sed-Chr9:35057903 Sed12g0950 Sed-Chr12:5923623 3.10E-131 dispersed
Sed09g1106 Sed-Chr9:35055861 Sed09g1107 Sed-Chr9:35057903 3.70E-167 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79772 PF07714 PK_Tyr_Ser-Thr 4.40E-54 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1107 - - - 0.0