Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1123 ATGGAGGAGAGTGGCGAGAAGGGTTTTGGTTTTGATCGAGTTTTGAATGAGGGTAATGAAGCGGCGTTGAGGAATCTTCGTGTAGATGGTGAGGAAAGTCTGCATTTGGTTTCTATTCGCTGTGACTCTGAGAGAGAGTCGTCGGCGGTGGAATTCGAGAAGGGGTATCGGGTGAGAGCGGAGGAAGTAAAGGTGGATGTCTGTAATGCTGAAGTGGAAAATAGGAGTTGGAAAAGGAGGAAGGTGCAGATTGAAGATGGAAGTACAAGGGTGGTGGAGAATGTGAAAAGGAAAGTTATGGCTGATAAACTAAGGGGTAGTGATCGAATTTTGCGGTCGAGTTCTGCAGTAAAGGTAGAGTGTAGTAATGTAGCTGATAGTGAAGAGAATAACAGTATTATGACGGTGCAGAATTGTAGCATTAGTTATGACACAAAATCAGTGAAGTTGGAGAGGGCAAGTGATGATGAATTGTTCTCTGGTGATCAGAAGGTTAAAAGAAAGCGTGGAAGACCACGAAAGGTGGAAAAGGAAGCCGAGGAAGTAGTCGTTAGCCCTATAAAGAAGTTGAAACGGAAGCGTGGAAGACCACGAAAGTCGGAGGGTGAAAACAACCATCAATCTGTCTGTGGGTTGAAGAAGTTAGAAAAAAAGCGTGGAAGAGGAAGACCACGCAAGACCGAAAAGGAAAATGTTAACCCATTGCCTCGTGGATTGAGTATCTTGAAACGTAGGCGTGGAAGACCACCCAAGTTGCAACAAAGCAATGAAGCTCTGAAGAATGAGCATATCGAGGAAAGAAAGGTCAAGTTGGCAAGAAAAATAAGTATGAAGTTGAGAAACAGGGTGAGGAATAATGGGCCAACTGATCGTATATATGCCGCGAAGAAGCTTATCAGGAAAGTAATACGCATGAAAAGAACTTCGCCTGCTGAAAACGATATATCTCAGGAATATTTGGAACCAGAGGAAGCAATGACAACGAGTTCAAAGGTGACATGTGGCGAAAAAATTAATGAAGTGAAGGAAGTAAAAAAGTCCAAGATCAAAGTAGATGATTGTAGTAAATCTGCAGCAAAGAATTTATTGAGAGAGAGGATTACTGAAATACTAATAACTGCTGGTTGGACAGTTCAGTATAGGCCCAGAAATAATAAGGAATACCACGATGCAGTTTATGTAAGTCCAGAGGGACGAACTCACTGGTCAATAACCTTGGCTTATAATGTGCTTAAAAATCACTATGAAGTAGGTGATGGTGATTCTAAAGTTTATAAGACTGGTTTTATATTTACTCCTATACCAGAGGAAGAAATCATGACACTAACAAGGGTTAGAAGAGCAGGGAAGAATGAAGAATCGAAGAATCAAAAGAAAACTGAAAAATTAAAAATGAAAGGGTTCATTGAAAAGGCAAAAGCAAGGAGTCCAGTTTCTAAGTCAACGCAGAGGAAGAGGAAGAAAGACTTGACACATCACGAGCTTGATGATTCAGACCTTAACCTAGTTAATGCGTTTCCTAGTTCATTTCCGACAAAAAATCGAAAGCGATGTGCTTTGTTGGTTAGAAATACAGAGGAAAATGCTGATTCATGCAATGATGGGTATTTATTATATAATGGGAAGCGGACACTACTTGCTTGGATGATAGATTTGGGGATTTTGTCACTTGATGAGAAGGTTCAGTACGTGAACCAAAGAAAGACACGGGCAAAGTTTGAGGGTAGACTTACAAAAGATGGAATTCATTGCAACTGCTGTGATGAAGTTATTACAATTTCAAAATTTGAAATGCATGCAGGAAGCAAACTTGGTCAGCCACTTGAAAATATATGTGTACAGAATGGTTCTTCCCTCCTCCAATGCCTGTTGGAATCATGGAATAAACAAAATGAATCACAATGTAAAGGGTATAATTTTGTAGACGTTGATGTCGAAGATCCTAATGACGATACTTGTGGAATTTGTGGAGATGGGGGAGACTTGATTTGTTGTGATAGTTGTCCATCTACGTTTCATCAAAGTTGCTTGGATATTAAGAAGTTTCCTTCTGGTTCGTGGCACTGTTTGTATTGCTCATGCAAATCATGCGGACAAATCACAGCAGGTTTACATCCAAGGGAGGATGATCATGAGGCAGATGCAGCCGAGTTGAGTAAATGCCATCTCTGCGAGAGAAAATATCACCCTTTATGTGTTCAGACAAATGATGCTTCTGGTCAGGACGTGAATGACCCATTGTTTTGCGGGAAGAAATGTCAAGTGTTACATGAAAGGCTACAAAAGCTTATTGGGGTTAAGCATGATATGGAAGAAGGATTTTCATGGACTCTTATTCGTAGAAGTGATGTTGGCTCAGATATTAGTCTCTGCAGTGAAGTAGCTCAGAAGGTTCAATGTAATTCCAAGCTCGCAGTTGCTTTGTTTGTCATGGATGAGTGCTTTTTACCTATCATTGACCACAGAAGTGGCATCAATTTGATTCATAACATTCTCTATAATTGTGGGTCAAATTTTACTCGTCTAAATTTTAGTGGCTTTTACACTGCAATTCTTGAAAAGGATGACGAGATGATATGTGCTGCATCCATAAGGATCCATGGAAATGAACTAGCGGAGATGCCATTCATTGGAACTCGTTATATGTATAGGCGTCAGGGAATGTGCCGTCGCTTTCTTAGTGTGATTGAATCGGCTTTGTCCTCTCTGAATGTCGAGAAGTTGGTCCTTCCCGCAATTTCGGAAGTAAAAGATACATGGACTAATGTCTTTGGTTTCAAGCCCCTTGAAGAGACTAGCAAGCAAAGGATTAGGAACATGAGTCTGTTGGTCTTTCCTGGTGTAGAAATGCTGCAGAAACCACTATTGAAGGATCAACTTCAGATGGAACATACACCTCTTGCAGAAGAACCAAAAAAGTCGGAGGCCGTTGCAACATCTCCTGAAGAGACTCATTCTCCTGAGCCATGCTTAAATTCGTGTAGCGAGCGCACTGCACAGGATGGATTTGGGCTTTCTGGTGATTATGCAGTTGTTGAATCCAGTGTTAAACCGAATGATAAGATCTCGAACGATGATGAAGCTAAACAGGTTGGCCAATGTCAAACTACCTTTCTTTGTTCAACCATTTCGGACCTTGAAGACCGGACGCCTAAACTAAATGGACAATTGGATGGAAGCTCGGCAATTGATCAAAAGTCAAGCCTGGAATATCTCAAGGGTACTGCAAGTTTCGATTCTCAGGAGAATGCAGAAGTTGGTATTCCTGATGACAAAATCAAGTCCACTCATGATGTGCATGTAAACCAGTCAGAAACAATCAGCTCTTGTGACCCGCAAGAGACTGTTTCGGTTCGTGATGAACAAAAGGTTCTTTTTGATTCAGAAATTGTAAATGGTTGCCATGCCACTCCCCAGATGGACGATAAAACTAGATCCCCCTCTGAAGGTGATAGGCTTAATGAACATACTGCCTCTGTTAAAGTTTCTTCTAGTTGCCATCCAACTGAGGATGTCGTTGTACGCTAA 3528 41.24 MEESGEKGFGFDRVLNEGNEAALRNLRVDGEESLHLVSIRCDSERESSAVEFEKGYRVRAEEVKVDVCNAEVENRSWKRRKVQIEDGSTRVVENVKRKVMADKLRGSDRILRSSSAVKVECSNVADSEENNSIMTVQNCSISYDTKSVKLERASDDELFSGDQKVKRKRGRPRKVEKEAEEVVVSPIKKLKRKRGRPRKSEGENNHQSVCGLKKLEKKRGRGRPRKTEKENVNPLPRGLSILKRRRGRPPKLQQSNEALKNEHIEERKVKLARKISMKLRNRVRNNGPTDRIYAAKKLIRKVIRMKRTSPAENDISQEYLEPEEAMTTSSKVTCGEKINEVKEVKKSKIKVDDCSKSAAKNLLRERITEILITAGWTVQYRPRNNKEYHDAVYVSPEGRTHWSITLAYNVLKNHYEVGDGDSKVYKTGFIFTPIPEEEIMTLTRVRRAGKNEESKNQKKTEKLKMKGFIEKAKARSPVSKSTQRKRKKDLTHHELDDSDLNLVNAFPSSFPTKNRKRCALLVRNTEENADSCNDGYLLYNGKRTLLAWMIDLGILSLDEKVQYVNQRKTRAKFEGRLTKDGIHCNCCDEVITISKFEMHAGSKLGQPLENICVQNGSSLLQCLLESWNKQNESQCKGYNFVDVDVEDPNDDTCGICGDGGDLICCDSCPSTFHQSCLDIKKFPSGSWHCLYCSCKSCGQITAGLHPREDDHEADAAELSKCHLCERKYHPLCVQTNDASGQDVNDPLFCGKKCQVLHERLQKLIGVKHDMEEGFSWTLIRRSDVGSDISLCSEVAQKVQCNSKLAVALFVMDECFLPIIDHRSGINLIHNILYNCGSNFTRLNFSGFYTAILEKDDEMICAASIRIHGNELAEMPFIGTRYMYRRQGMCRRFLSVIESALSSLNVEKLVLPAISEVKDTWTNVFGFKPLEETSKQRIRNMSLLVFPGVEMLQKPLLKDQLQMEHTPLAEEPKKSEAVATSPEETHSPEPCLNSCSERTAQDGFGLSGDYAVVESSVKPNDKISNDDEAKQVGQCQTTFLCSTISDLEDRTPKLNGQLDGSSAIDQKSSLEYLKGTASFDSQENAEVGIPDDKIKSTHDVHVNQSETISSCDPQETVSVRDEQKVLFDSEIVNGCHATPQMDDKTRSPSEGDRLNEHTASVKVSSSCHPTEDVVVR 1175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35312114 35323663 - Sed0016378.2 Sed09g1123 725887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1123 1175 ProSiteProfiles Zinc finger PHD-type profile. 650 695 IPR019787 -
Sed09g1123 1175 SMART PHD_3 652 693 IPR001965 -
Sed09g1123 1175 SMART PHD_3 694 754 IPR001965 -
Sed09g1123 1175 ProSitePatterns Zinc finger PHD-type signature. 653 692 IPR019786 -
Sed09g1123 1175 PANTHER PHD FINGER PROTEIN 12 275 1025 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER)
Sed09g1123 1175 MobiDBLite consensus disorder prediction 966 991 - -
Sed09g1123 1175 SUPERFAMILY FYVE/PHD zinc finger 641 699 IPR011011 -
Sed09g1123 1175 SMART AT_hook_2 243 255 IPR017956 GO:0003677(InterPro)
Sed09g1123 1175 SMART AT_hook_2 191 203 IPR017956 GO:0003677(InterPro)
Sed09g1123 1175 SMART AT_hook_2 218 230 IPR017956 GO:0003677(InterPro)
Sed09g1123 1175 SMART AT_hook_2 166 178 IPR017956 GO:0003677(InterPro)
Sed09g1123 1175 Pfam PHD-finger 653 692 IPR019787 -
Sed09g1123 1175 MobiDBLite consensus disorder prediction 472 493 - -
Sed09g1123 1175 Pfam Tify domain binding domain 575 625 IPR032308 -
Sed09g1123 1175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 713 IPR013083 -
Sed09g1123 1175 PRINTS AT-hook-like domain signature 189 200 IPR017956 GO:0003677(InterPro)
Sed09g1123 1175 PRINTS AT-hook-like domain signature 216 226 IPR017956 GO:0003677(InterPro)
Sed09g1123 1175 PRINTS AT-hook-like domain signature 166 176 IPR017956 GO:0003677(InterPro)
Sed09g1123 1175 MobiDBLite consensus disorder prediction 1142 1156 - -
Sed09g1123 1175 MobiDBLite consensus disorder prediction 160 263 - -
Sed09g1123 1175 MobiDBLite consensus disorder prediction 173 188 - -
Sed09g1123 1175 MobiDBLite consensus disorder prediction 1134 1175 - -
Sed09g1123 1175 Pfam Domain of unknown function (DUF7028) 333 414 IPR054292 -
Sed09g1123 1175 Pfam AT hook motif 166 177 IPR017956 GO:0003677(InterPro)
Sed09g1123 1175 Pfam AT hook motif 191 202 IPR017956 GO:0003677(InterPro)
Sed09g1123 1175 Pfam AT hook motif 218 229 IPR017956 GO:0003677(InterPro)
Sed09g1123 1175 Pfam AT hook motif 243 251 IPR017956 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1123 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0428 Sed-Chr7:3186217 Sed09g1123 Sed-Chr9:35312114 0.00E+00 dispersed
Sed09g0757 Sed-Chr9:14167300 Sed09g1123 Sed-Chr9:35312114 4.90E-168 dispersed
Sed09g1123 Sed-Chr9:35312114 Sed13g1804 Sed-Chr13:23064198 2.50E-70 dispersed
Sed09g1122 Sed-Chr9:35312114 Sed09g1123 Sed-Chr9:35312114 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
Vvi7g89 . . . Bda10g00577 . . . . Cmo08g00335 Cmo17g01163 . . . . . Cpe17g00858 . . . . . . . . Cla09g00660 Cam09g0695 Cec09g0686 Cco09g0684 Clacu09g0704 . Cre09g0673 Cone17ag0558 Cone20ag0858 . . Lsi02g02282 Csa07g01711 . Cme01g02078 . . . . Bpe10g00402 . . . Sed09g1123 . . Cma08g00340 Cma17g01186 Car08g00305 Car17g01118 . Cpe12g01032 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . . . Chy01g01576 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006471 1 2 1 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 38