Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1162 ATGCTTCCATGGGGAGGTCTCAGTTGCTGTTTGAGTGCAGCTGCTCTTTATCTTCTTGGAAGGAGCAGTGGCCGGGACGCAGCGCTGCTGAAATCCGTCACGCGGGTCGATCAGTTGAAGGAATTGGCTCAATTGCTTGAGGCTGAATGTGTATTACCTCTGGTTGTTGCAATTTCTGGAAGAGTTAGCTCTGATAGGCCAATTACTTGCGAGTTTAGTGGTTTGAGGGGTGTAATCGTGGAAGAAACGGCAGAACAACACTTTCTAAAGCACAACGATGCAGGATCGTGGATTCAGGATTCTGCACTGATGCTTTCCATGAGCAAAGAAGTTCCTTGGTATTTGGATGATGGGACTGGTCGTGCATTCGTGGTGGGAGCTCGAAGTGCCTCAAATTTTATATTACCAGTAGTAAGTGAGGTATTTGAAGAGTCTGGCAAATCCCTTATGCGTGGAACCTTAGATTATCTTCAAGGTCTTAAGATGCTTGGAGTCAAGCGAATTGAGCGTGTACTACCTACTGGTACTTCCTTGACTGTCGTTGGTGAGGCTGCCAAAGATGATGTTGGTACCATCAGGATACAACGACCACACAAAGGGCCATTTTATGTCTCCTCCAAAACAATCGATCAACTCATAAGCAATCTTGGGAAGTGGGCCAGGTGGTACAAGTATGCTTCTATGGGGTTGGGTATATTCGGTTTGTATCTTGTCGCAAAGCATGCTATTCTTTATCTTATGGAGAGAAGGCGTCGTTGGGAATTGCAAAAACGGGTCTTAGCTGCAGCTGCCAAGAGATCAAGCCAAGAAAATGAAGGGGAAAATGATAAGACAAACAATGGATCAGATGGTACGAAGAGAGCGAGAGACCGTTCAATGCCTGATCTTTGTGTGATATGTCTTGAGAGAGACTACAATGCCGTTTTTGTCCCGTGCGGTCATATGTGCTGCTGTGTAGCATGTTGTTCACAATTAACAAACTGTCCACTCTGTCGTCGAAGAATCGAGCTGGTCGTAAAGACTTTCCGCCATTGA 1035 45.89 MLPWGGLSCCLSAAALYLLGRSSGRDAALLKSVTRVDQLKELAQLLEAECVLPLVVAISGRVSSDRPITCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGRAFVVGARSASNFILPVVSEVFEESGKSLMRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAAKDDVGTIRIQRPHKGPFYVSSKTIDQLISNLGKWARWYKYASMGLGIFGLYLVAKHAILYLMERRRRWELQKRVLAAAAKRSSQENEGENDKTNNGSDGTKRARDRSMPDLCVICLERDYNAVFVPCGHMCCCVACCSQLTNCPLCRRRIELVVKTFRH 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35807171 35816507 + Sed0022837.1 Sed09g1162 725926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1162 344 ProSiteProfiles Zinc finger RING-type profile. 297 332 IPR001841 -
Sed09g1162 344 PANTHER - 1 340 IPR044231 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed09g1162 344 Pfam Zinc finger, C3HC4 type (RING finger) 295 336 - -
Sed09g1162 344 Pfam E3 Ubiquitin ligase 85 235 IPR022170 GO:0004842(InterPro)|GO:0006996(InterPro)|GO:0016567(InterPro)
Sed09g1162 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 343 IPR013083 -
Sed09g1162 344 FunFam Baculoviral IAP repeat containing 7 306 342 - -
Sed09g1162 344 MobiDBLite consensus disorder prediction 266 288 - -
Sed09g1162 344 MobiDBLite consensus disorder prediction 269 288 - -
Sed09g1162 344 SUPERFAMILY RING/U-box 296 338 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0395 Sed-Chr7:2969605 Sed09g1162 Sed-Chr9:35807171 9.90E-160 dispersed
Sed09g1162 Sed-Chr9:35807171 Sed09g1163 Sed-Chr9:35807171 5.60E-172 tandem
Sed07g0394 Sed-Chr7:2968615 Sed09g1162 Sed-Chr9:35807171 1.30E-181 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1162 K15688 - csv:101218196 630.557