Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g1162 | ATGCTTCCATGGGGAGGTCTCAGTTGCTGTTTGAGTGCAGCTGCTCTTTATCTTCTTGGAAGGAGCAGTGGCCGGGACGCAGCGCTGCTGAAATCCGTCACGCGGGTCGATCAGTTGAAGGAATTGGCTCAATTGCTTGAGGCTGAATGTGTATTACCTCTGGTTGTTGCAATTTCTGGAAGAGTTAGCTCTGATAGGCCAATTACTTGCGAGTTTAGTGGTTTGAGGGGTGTAATCGTGGAAGAAACGGCAGAACAACACTTTCTAAAGCACAACGATGCAGGATCGTGGATTCAGGATTCTGCACTGATGCTTTCCATGAGCAAAGAAGTTCCTTGGTATTTGGATGATGGGACTGGTCGTGCATTCGTGGTGGGAGCTCGAAGTGCCTCAAATTTTATATTACCAGTAGTAAGTGAGGTATTTGAAGAGTCTGGCAAATCCCTTATGCGTGGAACCTTAGATTATCTTCAAGGTCTTAAGATGCTTGGAGTCAAGCGAATTGAGCGTGTACTACCTACTGGTACTTCCTTGACTGTCGTTGGTGAGGCTGCCAAAGATGATGTTGGTACCATCAGGATACAACGACCACACAAAGGGCCATTTTATGTCTCCTCCAAAACAATCGATCAACTCATAAGCAATCTTGGGAAGTGGGCCAGGTGGTACAAGTATGCTTCTATGGGGTTGGGTATATTCGGTTTGTATCTTGTCGCAAAGCATGCTATTCTTTATCTTATGGAGAGAAGGCGTCGTTGGGAATTGCAAAAACGGGTCTTAGCTGCAGCTGCCAAGAGATCAAGCCAAGAAAATGAAGGGGAAAATGATAAGACAAACAATGGATCAGATGGTACGAAGAGAGCGAGAGACCGTTCAATGCCTGATCTTTGTGTGATATGTCTTGAGAGAGACTACAATGCCGTTTTTGTCCCGTGCGGTCATATGTGCTGCTGTGTAGCATGTTGTTCACAATTAACAAACTGTCCACTCTGTCGTCGAAGAATCGAGCTGGTCGTAAAGACTTTCCGCCATTGA | 1035 | 45.89 | MLPWGGLSCCLSAAALYLLGRSSGRDAALLKSVTRVDQLKELAQLLEAECVLPLVVAISGRVSSDRPITCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGRAFVVGARSASNFILPVVSEVFEESGKSLMRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAAKDDVGTIRIQRPHKGPFYVSSKTIDQLISNLGKWARWYKYASMGLGIFGLYLVAKHAILYLMERRRRWELQKRVLAAAAKRSSQENEGENDKTNNGSDGTKRARDRSMPDLCVICLERDYNAVFVPCGHMCCCVACCSQLTNCPLCRRRIELVVKTFRH | 344 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 35807171 | 35816507 | + | Sed0022837.1 | Sed09g1162 | 725926 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g1162 | 344 | ProSiteProfiles | Zinc finger RING-type profile. | 297 | 332 | IPR001841 | - | |
Sed09g1162 | 344 | PANTHER | - | 1 | 340 | IPR044231 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed09g1162 | 344 | Pfam | Zinc finger, C3HC4 type (RING finger) | 295 | 336 | - | - | |
Sed09g1162 | 344 | Pfam | E3 Ubiquitin ligase | 85 | 235 | IPR022170 | GO:0004842(InterPro)|GO:0006996(InterPro)|GO:0016567(InterPro) | |
Sed09g1162 | 344 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 263 | 343 | IPR013083 | - | |
Sed09g1162 | 344 | FunFam | Baculoviral IAP repeat containing 7 | 306 | 342 | - | - | |
Sed09g1162 | 344 | MobiDBLite | consensus disorder prediction | 266 | 288 | - | - | |
Sed09g1162 | 344 | MobiDBLite | consensus disorder prediction | 269 | 288 | - | - | |
Sed09g1162 | 344 | SUPERFAMILY | RING/U-box | 296 | 338 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0395 | Sed-Chr7:2969605 | Sed09g1162 | Sed-Chr9:35807171 | 9.90E-160 | dispersed | |
Sed09g1162 | Sed-Chr9:35807171 | Sed09g1163 | Sed-Chr9:35807171 | 5.60E-172 | tandem | |
Sed07g0394 | Sed-Chr7:2968615 | Sed09g1162 | Sed-Chr9:35807171 | 1.30E-181 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g1162 | K15688 | - | csv:101218196 | 630.557 |