Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1163 ATGTGTCTGATTTTTTTTCTTCTAAAGTTATTTATTTTAGAAACATTTCTCTGTTTTTCAGCTCAATTGCTTGAGGCTGAATGTGTATTACCTCTGGTTGTTGCAATTTCTGGAAGAGTTAGCTCTGATAGGCCAATTACTTGCGAGTTTAGTGGTTTGAGGGGTGTAATCGTGGAAGAAACGGCAGAACAACACTTTCTAAAGCACAACGATGCAGGATCGTGGATTCAGGATTCTGCACTGATGCTTTCCATGAGCAAAGAAGTTCCTTGGTATTTGGATGATGGGACTGGTCGTGCATTCGTGGTGGGAGCTCGAAGTGCCTCAAATTTTATATTACCAGTAGTAAGTGAGGTATTTGAAGAGTCTGGCAAATCCCTTATGCGTGGAACCTTAGATTATCTTCAAGGTCTTAAGATGCTTGGAGTCAAGCGAATTGAGCGTGTACTACCTACTGGTACTTCCTTGACTGTCGTTGGTGAGGCTGCCAAAGATGATGTTGGTACCATCAGGATACAACGACCACACAAAGGGCCATTTTATGTCTCCTCCAAAACAATCGATCAACTCATAAGCAATCTTGGGAAGTGGGCCAGGTGGTACAAGTATGCTTCTATGGGGTTGGGTATATTCGGTTTGTATCTTGTCGCAAAGCATGCTATTCTTTATCTTATGGAGAGAAGGCGTCGTTGGGAATTGCAAAAACGGGTCTTAGCTGCAGCTGCCAAGAGATCAAGCCAAGAAAATGAAGGGGAAAATGATAAGACAAACAATGGATCAGATGGTACGAAGAGAGCGAGAGACCGTTCAATGCCTGATCTTTGTGTGATATGTCTTGAGAGAGACTACAATGCCGTTTTTGTCCCGTGCGGTCATATGTGCTGCTGTGTAGCATGTTGTTCACAATTAACAAACTGTCCACTCTGTCGTCGAAGAATCGAGCTGGTCGTAAAGACTTTCCGCCATTGA 969 43.24 MCLIFFLLKLFILETFLCFSAQLLEAECVLPLVVAISGRVSSDRPITCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGRAFVVGARSASNFILPVVSEVFEESGKSLMRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAAKDDVGTIRIQRPHKGPFYVSSKTIDQLISNLGKWARWYKYASMGLGIFGLYLVAKHAILYLMERRRRWELQKRVLAAAAKRSSQENEGENDKTNNGSDGTKRARDRSMPDLCVICLERDYNAVFVPCGHMCCCVACCSQLTNCPLCRRRIELVVKTFRH 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35807171 35816507 + Sed0022837.2 Sed09g1163 725927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1163 322 ProSiteProfiles Zinc finger RING-type profile. 275 310 IPR001841 -
Sed09g1163 322 Pfam E3 Ubiquitin ligase 63 213 IPR022170 GO:0004842(InterPro)|GO:0006996(InterPro)|GO:0016567(InterPro)
Sed09g1163 322 SUPERFAMILY RING/U-box 274 316 - -
Sed09g1163 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 321 IPR013083 -
Sed09g1163 322 Pfam Zinc finger, C3HC4 type (RING finger) 273 314 - -
Sed09g1163 322 PANTHER - 21 318 IPR044231 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed09g1163 322 MobiDBLite consensus disorder prediction 247 266 - -
Sed09g1163 322 MobiDBLite consensus disorder prediction 244 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0394 Sed-Chr7:2968615 Sed09g1163 Sed-Chr9:35807171 3.50E-158 dispersed
Sed09g1162 Sed-Chr9:35807171 Sed09g1163 Sed-Chr9:35807171 5.60E-172 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1163 K15688 - csv:101218196 570.852