Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1173 ATGTCCATTTCTCTCCACCCCCTTCTTCTCCTTCTCACTATAACCTTCCTCTCTGCCGTCGCCGCCGCCGCCGCCGCCGTCTGCCCTCTCAACTTCACCGTCCTCCGCCAGTTCCCCCAGGGCTCCGCCGTCCCCCGCCCCGACTTCTCCGACGAATGTCAATACATCCGCCTCGGCCTCCGCCTCGTCCTCTCCCAGTACCTCAAACTCACCGGATCCTTCTTACCGCCGGCGAACACCTCCGGTTCGTGCTGGAGTTCTTACGATTCCGTCGTTAATGGACTTTGGCCGGATTTCAACATTCGGACCGATTGCGGGTTTCGAACCGAGTGGATCTCACAGGGCTGTATGAACATCACCACCAAATCCGAGTTCGAGAAGATCGTTCCTAAATCGGCGATTGACGGCGTCGTTTCGAGCTGTAATCAATCGCTCGAAAATGGTTCTCCATGTGCCTTGTGCACGACCAGGCTCTCGATCGTTCAGGCCTCGTTCTTGAACGGTCGGTCCATCGGGAACCTCACCGATTGCCAAGCCTATCCGTCGATCTACGCCGCGGCTTACGTGAATCGATTCGGCCCGGCCGATCCCGGGACCGCCCAGTGCTTGTTTTCGCTTAATCCGTCGAGGGATTCCAGAAGGAAGAAGGGGAATACTGTGGTTTTGGTGGTTTTGATTTGTTGCAGCATTGCAGCGTCAATGGCGGTTGCGGTTGGTGGGTGGTGGCTATGGCGAAAACAAGGGAGATCGACGAAGAACGACAGGATTCGAAGAATGGAAACTGGGTTGGGTTCGGGATTGGAGTCGATTAGTGCGAGCACGACGTTGGTGAAGTTCGGATTCGACGAGATCAAAAGGGCGACGAGGAATTTCTCTAGAGATAACATAATTGGGAGAGGGGGATATGGAAATGTGTATAAAGGGATTTTATCTGATGATTCTGAAGTTGCATTGAAGAGGTTCAAGAACTGTTCTGCAGCTGGAGATGCCATTTTTGCTCATGAAGTTGAGGTAATTTCTAGTATTAGACATGTTAATCTTGTTGATTTGAGAGGTTATTGTATTGCAACAACTCCATTAGAGGGTCATCAAAGGATTATTGTGTGTGATTTGATGAAGAATGGTAGTCTTTATGATCATTTATTTGGGCATTCTGATTATAGATTAAGTTGGCCAATTAGGCAAAAAATTGCTCTAGGTACTGCTAGGGGATTGGCTTATCTCCATTATGGAGCTCAACCTGCAATTATTCATAGAGATATCAAAGCTAGCAACATTCTTTTGGATGATAATTTTGAACCCAAGGTTGCTGACTTTGGTTTAGCTAAGTTTACTCCTGAAGGAATGACTCATTTGAGCACAAGGGTTGCTGGGACTATGGGGTATGTGGCTCCCGAGTACGCGTTGTACGGTCAGTTGACGGAGAGAAGTGATGTGTATAGCTTTGGAGTTGTTCTGCTCGAGCTTTTGAGCGGGAGGAAGGCGCTCGGGGTGAGAAGCGAGGATAGCCAGCCGTTTTTGGTGACGGATTGGGCTTGGTCTTTGGTGAGGGAACAAAAGGTAATGGATGTTGTTGAAAAAGGCATGCCTGAGCTTGGTTCTTGTGAGGTTGTTGAGAAATATGTTTTGGTTGCTGTTCTTTGTTCTCATCCTCAGCTCTATGCTAGGCCATCAATGGATCAAGTTGTGAAAATGTTGGAAACTGACCTTTCTGTCCCTTCAATCCCTGAAAGACCTATCCCTTTGGTTGCTGAAATTGATGAAATTGAGAAATCTATGAGTAGTAGTAGCTCTGCTCAGCATTCTGGTTCTGTTGGTTTTCATAGTTACACATTACCAAATGACTCAAAGTAG 1854 48.17 MSISLHPLLLLLTITFLSAVAAAAAAVCPLNFTVLRQFPQGSAVPRPDFSDECQYIRLGLRLVLSQYLKLTGSFLPPANTSGSCWSSYDSVVNGLWPDFNIRTDCGFRTEWISQGCMNITTKSEFEKIVPKSAIDGVVSSCNQSLENGSPCALCTTRLSIVQASFLNGRSIGNLTDCQAYPSIYAAAYVNRFGPADPGTAQCLFSLNPSRDSRRKKGNTVVLVVLICCSIAASMAVAVGGWWLWRKQGRSTKNDRIRRMETGLGSGLESISASTTLVKFGFDEIKRATRNFSRDNIIGRGGYGNVYKGILSDDSEVALKRFKNCSAAGDAIFAHEVEVISSIRHVNLVDLRGYCIATTPLEGHQRIIVCDLMKNGSLYDHLFGHSDYRLSWPIRQKIALGTARGLAYLHYGAQPAIIHRDIKASNILLDDNFEPKVADFGLAKFTPEGMTHLSTRVAGTMGYVAPEYALYGQLTERSDVYSFGVVLLELLSGRKALGVRSEDSQPFLVTDWAWSLVREQKVMDVVEKGMPELGSCEVVEKYVLVAVLCSHPQLYARPSMDQVVKMLETDLSVPSIPERPIPLVAEIDEIEKSMSSSSSAQHSGSVGFHSYTLPNDSK 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35931512 35933836 - Sed0015258.1 Sed09g1173 725937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1173 617 PANTHER OS01G0750732 PROTEIN 50 598 IPR050885 -
Sed09g1173 617 Gene3D Transferase(Phosphotransferase) domain 1 372 580 - -
Sed09g1173 617 Gene3D Phosphorylase Kinase; domain 1 256 370 - -
Sed09g1173 617 ProSiteProfiles Protein kinase domain profile. 291 570 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1173 617 MobiDBLite consensus disorder prediction 593 617 - -
Sed09g1173 617 Pfam SPARK 25 177 IPR043891 -
Sed09g1173 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g1173 617 SMART serkin_6 291 566 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1173 617 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 252 370 - -
Sed09g1173 617 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 372 574 - -
Sed09g1173 617 CDD STKc_IRAK 297 567 - -
Sed09g1173 617 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524(InterPro)
Sed09g1173 617 Pfam Protein kinase domain 293 563 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1173 617 SUPERFAMILY Protein kinase-like (PK-like) 276 597 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1607 Sed-Chr4:30858786 Sed09g1173 Sed-Chr9:35931512 1.30E-92 dispersed
Sed09g1173 Sed-Chr9:35931512 Sed13g0532 Sed-Chr13:3649746 5.80E-95 dispersed
Sed07g0383 Sed-Chr7:2885759 Sed09g1173 Sed-Chr9:35931512 8.20E-275 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79773 PF00069 Pkinase 1.50E-40 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1173 - - - 0.0