Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1198 ATGGATTCAAGTTCATTCCAATTTCTGTCCAAATTGGGACTGAAACCCGATCCGGAAGAGGCGAGCTTCGCTTTTTTCGCGGTGGTTCTCGTTGTCTGTTATATAATTGTTCGCATTTTTGAGAAGAAACGTTGGCTGAATGAGTCAGTTACTTCCCTAGCCATTGGAATTTGCACTGGAATTTCCATTCTTCTAATCACTGGAGGAAAAAGTTCTCACCTCTTAGAATTCAATGAACAGTTTTTCTTCATTTACATTCTTCCACCCATAATATTTAATGCCGGGTATCAGGTGAAGAAGAAGAAACTGTTTTTCAGAAACTTTCCGTCAATCATATTGTTTGGTGCTTTTGGATCTGTGATATCGTTCTTAATCATATCACTAGGTTCCCTCAACTTATTCAAGAAATTGGGTATTGGCTCATTAAGCACGCAGGATTATTTTGCACTTGGGGCAATCTTAACAGCGACAGATAGTGTTTGCACCTTGCAAGTTCTTAAAGAAGATGAGACACCTTTACTTTATAGTCTGGTCTTTGGCGAAGGCGTGATCAATGATGCTACCTCAGTGGTACTCTTCAATGCAATCAAGAAATTTGACCTCGCTCATATCACTTCTGCAAATACCTTTCAGTTATCCGGAAGTTTCTTGAGTTTGTTTTTCGAAAGCATATTGCTTGGAATTGCAGTTGGGCTGCTATGTTCATTTATCGTGAAGAAGCTATCCTTTGGCAGACACCCTTCAGATTATGAAGCTGTTCTGATGATTTTGTTGGCTTACATTTCGTATTTGATCGCGGAACTATATCTTCTTAGCGGTATTCTTAGTGTGTTCTTTTGTGGGATTGTCATGTCTCACTATACATCTTGGCAATATAATGAATCTGACAGTTCCTCCACACCGGCATCTCGGCAGGCACCTCGCCATGTTTTTGCAACAATATCTTTCGTTGCAGAGATTATTATCTTCCTTTATGTGGGTATGGATGCTTTGGATATTGGGAAGTGGAAAGTTGTTAAAGACAGCCCTGGGACATCATTTGCAGCAAGTTCTATACTTCTATGTCTTGTTCTGGTTGGAAGAGCAGCTTTTGTGTTTCCACTCTCTTTCTTATCCAACTTGACCAGATCGCAAAGAAAAGACCATATTGGGTTTAAACAGCAGTTCACAATTTGGTGGGCTGGGCTCATGAGAGGTGCGGTATCTGTGGCTCTTGCTTATCATCAGTTTGCAAAGCCAGGGGAAAATGAACGAGAGGCTTCGATGATGATAACTAGCACCATTACAATTGTTCTCTTCACAAACGTGGTATGTGGATTGTTCACCAAGAGTATAGTAAAACGCACGGTTGATGGAAATGGCAACAACTCAGATGAAATTGGTCTTTTGCTTCAAGAATTGAATGATCCATTGCTTGTAGTTGATAGTGATGATGCTGAAAACAAGACGGACGAGGAGACAAATTACGACATTAGTTTCATGTCGTTGTTGATGACATCTCCAATTCGATGTTTCCAATACTATTGGATGGAGTTTGATAATTGCATCATGCGCCCGATTTTTGGACGGACTCAATCGTCAACGGAAGTTCTCCCGCCCATAAGTTCTCCCTAG 1614 40.71 MDSSSFQFLSKLGLKPDPEEASFAFFAVVLVVCYIIVRIFEKKRWLNESVTSLAIGICTGISILLITGGKSSHLLEFNEQFFFIYILPPIIFNAGYQVKKKKLFFRNFPSIILFGAFGSVISFLIISLGSLNLFKKLGIGSLSTQDYFALGAILTATDSVCTLQVLKEDETPLLYSLVFGEGVINDATSVVLFNAIKKFDLAHITSANTFQLSGSFLSLFFESILLGIAVGLLCSFIVKKLSFGRHPSDYEAVLMILLAYISYLIAELYLLSGILSVFFCGIVMSHYTSWQYNESDSSSTPASRQAPRHVFATISFVAEIIIFLYVGMDALDIGKWKVVKDSPGTSFAASSILLCLVLVGRAAFVFPLSFLSNLTRSQRKDHIGFKQQFTIWWAGLMRGAVSVALAYHQFAKPGENEREASMMITSTITIVLFTNVVCGLFTKSIVKRTVDGNGNNSDEIGLLLQELNDPLLVVDSDDAENKTDEETNYDISFMSLLMTSPIRCFQYYWMEFDNCIMRPIFGRTQSSTEVLPPISSP 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36171641 36179333 - Sed0027673.1 Sed09g1198 725962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1198 537 PANTHER SODIUM/HYDROGEN EXCHANGER 23 526 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Sed09g1198 537 Pfam Sodium/hydrogen exchanger family 29 447 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Sed09g1198 537 Gene3D - 142 195 - -
Sed09g1198 537 PRINTS Na+/H+ exchanger signature 111 119 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed09g1198 537 PRINTS Na+/H+ exchanger signature 151 161 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed09g1198 537 PRINTS Na+/H+ exchanger signature 81 92 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1198 Sed-Chr9:36171641 Sed11g1168 Sed-Chr11:27580093 8.00E-40 dispersed
Sed09g1198 Sed-Chr9:36171641 Sed09g1199 Sed-Chr9:36182154 1.80E-161 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1198 - - - 0.0