Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1199 ATGGATTCGTATTTCGGAAAAACTGTGATGAAGTTGGCTTTGAAAGCAGATCCGGAAGAGCATCGTGTCGCGTTGTTTGTGTTACTTATCTGTGCTTGTATTGTAATAGGCCATCTTCTTGAGAAAAGTCGTTGGATGAATGAATCAGTGACTGCAATTTTCATTGGTCTATTCTCTGGAACTCTCATCTTATTCACAACCAAAGGCAGAGACTCGCGTATCCTAGTGTTTAGTGAAGAAATTTTCTTCATTTATGTTCTTCCACCTATAATTTTTAATGCAGGATTTCAGGTGAAAAAGAAACAGTTCTTTAGGAACTTTCTAATGATCATGTTGTTTGGAGCTATTGGTACTGTGATTTCATTCTTCATCATATCACTAGGTTCACTCAATTTATTCAAGAAATTGGATATTGGCTTCTTAGACGTGGGTGATTATTTTGCTCTTGGAGCAATCTTATCAGCCACAGATAGTGTTTGCACCTTGCAGGTGCTTAATCAGGATGAGACTCCTTTACTGTATAGTCTAGTCTTTGGTGAAGGTGTGGTTAATGATGCTACCTCTATTGTACTTTTCAAAGCTATCCAGAGATTTGACCTCTCTCACATCACCTCAACCAATGGCATTCAGCTTCTGGGAAATTTTTTCTATTTATTTTTCACGAGTACCTTGCTGGGAGTAATAGTTGGGTTGTCAAGTGCATACATCATAAAGAAACTGTATTTTGGCAGGCACTCGACTGATCGGGAGGTTGCTTTGATGATTTTAATGCCTTACCTTTCATATATGACTGCTGAATTGTGCTATCTTAGTGGTATTCTCACCATGTTCTTTTGTGGGATTGTCATGTCACATTACACATGGCATAATGTGACTGAAAGTTCAAGAGTGACCACCAAGCATACTTTTGCGACACTCTCATTTGTTTCAGAGATTTTCATCTTCTTATATGTTGGTATGGATGCCTTGGATATTGAGAAGTGGAAAGTTGTTGGCCAAAGGCCGTGGACATCAGCTGGAGTGAGTCTAATATTGCTAAGTTTAATTCTTATTGCGAGAGCAGCTTTTGTATTTCCACTCTCTTTCTTATCCAACTTGACTAGAAAGTCTCAGAGTGACAAAATTGGTTTTAAGCAGCAGGTCACAATTTGGTGGGCTGGGCTCATGAGAGGCGCTGTATCGGTGGCACTTGCTTATAATCAGTTTACAAGATCAGGGCACACACAACTGCAAGGGAATGCGATCATGATTACGAGCACAATCACCATTGTTCTCTTTACTAATGTGGTATTTGGACTATTAACTAAGCCTATTGTAAGGTACATGCTTTCACTGCCTGAAGAACAAACAAATAGCGCGTCAGATTCTCCACGCAAATCGCTGAACAACCCTCTTTTGCCCGTCGACGAAGATATCGAATCCGATGCGGGAGGATTGAACATTCCCCGTCCTAGCCTACGAATGCTGTTGGCAACTCCAACTCGCTCTGTCCATTACTATTGGCGGATGTTTGATGACCGATACATGCGGCCCGTTTTTGGTGGAAGAGGTTTTGTACCTTTCATCCCTGGCTCACCAACTGAGAAGTATATCCATTGA 1599 40.84 MDSYFGKTVMKLALKADPEEHRVALFVLLICACIVIGHLLEKSRWMNESVTAIFIGLFSGTLILFTTKGRDSRILVFSEEIFFIYVLPPIIFNAGFQVKKKQFFRNFLMIMLFGAIGTVISFFIISLGSLNLFKKLDIGFLDVGDYFALGAILSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSIVLFKAIQRFDLSHITSTNGIQLLGNFFYLFFTSTLLGVIVGLSSAYIIKKLYFGRHSTDREVALMILMPYLSYMTAELCYLSGILTMFFCGIVMSHYTWHNVTESSRVTTKHTFATLSFVSEIFIFLYVGMDALDIEKWKVVGQRPWTSAGVSLILLSLILIARAAFVFPLSFLSNLTRKSQSDKIGFKQQVTIWWAGLMRGAVSVALAYNQFTRSGHTQLQGNAIMITSTITIVLFTNVVFGLLTKPIVRYMLSLPEEQTNSASDSPRKSLNNPLLPVDEDIESDAGGLNIPRPSLRMLLATPTRSVHYYWRMFDDRYMRPVFGGRGFVPFIPGSPTEKYIH 532
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 36182154 36192351 - Sed0006128.1 Sed09g1199 725963
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1199 532 PRINTS Na+/H+ exchanger signature 81 92 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed09g1199 532 PRINTS Na+/H+ exchanger signature 150 160 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed09g1199 532 PRINTS Na+/H+ exchanger signature 110 118 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed09g1199 532 PRINTS Na+/H+ exchanger signature 95 109 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed09g1199 532 ProSiteProfiles cAMP/cGMP binding motif profile. 121 153 IPR000595 -
Sed09g1199 532 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Sed09g1199 532 NCBIfam sodium/hydrogen exchanger 3 22 455 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed09g1199 532 PANTHER SODIUM/HYDROGEN EXCHANGER 17 522 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Sed09g1199 532 Pfam Sodium/hydrogen exchanger family 32 440 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Sed09g1199 532 Gene3D - 143 194 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3536 Sed-Chr4:44791610 Sed09g1199 Sed-Chr9:36182154 5.30E-201 dispersed
Sed04g3688 Sed-Chr4:45823546 Sed09g1199 Sed-Chr9:36182154 8.00E-139 dispersed
Sed04g3689 Sed-Chr4:45823546 Sed09g1199 Sed-Chr9:36182154 1.10E-132 dispersed
Sed09g1199 Sed-Chr9:36182154 Sed11g1168 Sed-Chr11:27580093 5.10E-47 dispersed
Sed09g1198 Sed-Chr9:36171641 Sed09g1199 Sed-Chr9:36182154 1.80E-161 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1199 - - - 0.0