Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed09g1199 | ATGGATTCGTATTTCGGAAAAACTGTGATGAAGTTGGCTTTGAAAGCAGATCCGGAAGAGCATCGTGTCGCGTTGTTTGTGTTACTTATCTGTGCTTGTATTGTAATAGGCCATCTTCTTGAGAAAAGTCGTTGGATGAATGAATCAGTGACTGCAATTTTCATTGGTCTATTCTCTGGAACTCTCATCTTATTCACAACCAAAGGCAGAGACTCGCGTATCCTAGTGTTTAGTGAAGAAATTTTCTTCATTTATGTTCTTCCACCTATAATTTTTAATGCAGGATTTCAGGTGAAAAAGAAACAGTTCTTTAGGAACTTTCTAATGATCATGTTGTTTGGAGCTATTGGTACTGTGATTTCATTCTTCATCATATCACTAGGTTCACTCAATTTATTCAAGAAATTGGATATTGGCTTCTTAGACGTGGGTGATTATTTTGCTCTTGGAGCAATCTTATCAGCCACAGATAGTGTTTGCACCTTGCAGGTGCTTAATCAGGATGAGACTCCTTTACTGTATAGTCTAGTCTTTGGTGAAGGTGTGGTTAATGATGCTACCTCTATTGTACTTTTCAAAGCTATCCAGAGATTTGACCTCTCTCACATCACCTCAACCAATGGCATTCAGCTTCTGGGAAATTTTTTCTATTTATTTTTCACGAGTACCTTGCTGGGAGTAATAGTTGGGTTGTCAAGTGCATACATCATAAAGAAACTGTATTTTGGCAGGCACTCGACTGATCGGGAGGTTGCTTTGATGATTTTAATGCCTTACCTTTCATATATGACTGCTGAATTGTGCTATCTTAGTGGTATTCTCACCATGTTCTTTTGTGGGATTGTCATGTCACATTACACATGGCATAATGTGACTGAAAGTTCAAGAGTGACCACCAAGCATACTTTTGCGACACTCTCATTTGTTTCAGAGATTTTCATCTTCTTATATGTTGGTATGGATGCCTTGGATATTGAGAAGTGGAAAGTTGTTGGCCAAAGGCCGTGGACATCAGCTGGAGTGAGTCTAATATTGCTAAGTTTAATTCTTATTGCGAGAGCAGCTTTTGTATTTCCACTCTCTTTCTTATCCAACTTGACTAGAAAGTCTCAGAGTGACAAAATTGGTTTTAAGCAGCAGGTCACAATTTGGTGGGCTGGGCTCATGAGAGGCGCTGTATCGGTGGCACTTGCTTATAATCAGTTTACAAGATCAGGGCACACACAACTGCAAGGGAATGCGATCATGATTACGAGCACAATCACCATTGTTCTCTTTACTAATGTGGTATTTGGACTATTAACTAAGCCTATTGTAAGGTACATGCTTTCACTGCCTGAAGAACAAACAAATAGCGCGTCAGATTCTCCACGCAAATCGCTGAACAACCCTCTTTTGCCCGTCGACGAAGATATCGAATCCGATGCGGGAGGATTGAACATTCCCCGTCCTAGCCTACGAATGCTGTTGGCAACTCCAACTCGCTCTGTCCATTACTATTGGCGGATGTTTGATGACCGATACATGCGGCCCGTTTTTGGTGGAAGAGGTTTTGTACCTTTCATCCCTGGCTCACCAACTGAGAAGTATATCCATTGA | 1599 | 40.84 | MDSYFGKTVMKLALKADPEEHRVALFVLLICACIVIGHLLEKSRWMNESVTAIFIGLFSGTLILFTTKGRDSRILVFSEEIFFIYVLPPIIFNAGFQVKKKQFFRNFLMIMLFGAIGTVISFFIISLGSLNLFKKLDIGFLDVGDYFALGAILSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSIVLFKAIQRFDLSHITSTNGIQLLGNFFYLFFTSTLLGVIVGLSSAYIIKKLYFGRHSTDREVALMILMPYLSYMTAELCYLSGILTMFFCGIVMSHYTWHNVTESSRVTTKHTFATLSFVSEIFIFLYVGMDALDIEKWKVVGQRPWTSAGVSLILLSLILIARAAFVFPLSFLSNLTRKSQSDKIGFKQQVTIWWAGLMRGAVSVALAYNQFTRSGHTQLQGNAIMITSTITIVLFTNVVFGLLTKPIVRYMLSLPEEQTNSASDSPRKSLNNPLLPVDEDIESDAGGLNIPRPSLRMLLATPTRSVHYYWRMFDDRYMRPVFGGRGFVPFIPGSPTEKYIH | 532 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 36182154 | 36192351 | - | Sed0006128.1 | Sed09g1199 | 725963 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed09g1199 | 532 | PRINTS | Na+/H+ exchanger signature | 81 | 92 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed09g1199 | 532 | PRINTS | Na+/H+ exchanger signature | 150 | 160 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed09g1199 | 532 | PRINTS | Na+/H+ exchanger signature | 110 | 118 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed09g1199 | 532 | PRINTS | Na+/H+ exchanger signature | 95 | 109 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed09g1199 | 532 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 121 | 153 | IPR000595 | - | |
| Sed09g1199 | 532 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 33 | - | - | |
| Sed09g1199 | 532 | NCBIfam | sodium/hydrogen exchanger 3 | 22 | 455 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed09g1199 | 532 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 17 | 522 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Sed09g1199 | 532 | Pfam | Sodium/hydrogen exchanger family | 32 | 440 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Sed09g1199 | 532 | Gene3D | - | 143 | 194 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g3536 | Sed-Chr4:44791610 | Sed09g1199 | Sed-Chr9:36182154 | 5.30E-201 | dispersed | |
| Sed04g3688 | Sed-Chr4:45823546 | Sed09g1199 | Sed-Chr9:36182154 | 8.00E-139 | dispersed | |
| Sed04g3689 | Sed-Chr4:45823546 | Sed09g1199 | Sed-Chr9:36182154 | 1.10E-132 | dispersed | |
| Sed09g1199 | Sed-Chr9:36182154 | Sed11g1168 | Sed-Chr11:27580093 | 5.10E-47 | dispersed | |
| Sed09g1198 | Sed-Chr9:36171641 | Sed09g1199 | Sed-Chr9:36182154 | 1.80E-161 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed09g1199 | - | - | - | 0.0 |