Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1215 ATGGAAGATACTGAGCTTGAAGAGGGAGAAGCTTGTTCATATCAGAACAATGGAGATTTTGATTCTAATATCGACCCTGATGTTGCTCTCTCCTACATCGATGTGAAAATTCAACATGTTTTGGGACACTTTCAGAAAGATTTTGAGGGTGGAGTCTCTGCAGAAAATTTGGGGGCAAAATTTGGTGGATATGGTTCATTTTTACCTTCCTATCAACGGTCTCCAGTTTGGTCTCATTCGAAGACTCCACCTAAAGGTTCTAATTGCATTTCATCCAGATCTCCCAATAATTTTCAACATGAGGTTGGCCATAATAACTCTGTAGTTTCTTCGACTACTCCTCATTCAATAAGACCTGGACCGCCTTCTACAAGTTCTACATCACTGCCCATAACCAAAGGCCCGAATCTGAATGAATCGTCCAAACAAGAAGTATGCACGTCTTTCCGGCATGTTGACGAACTTGCTTCTGGATATGGATGTGTAAACAATAAATCCACTACATCTTCAGACCAAAAATCACTGAAGGTGCGAATTAAAGTGGGTTCCGATAACCTGTCGACAAGAAAAAATGATGCTATCTATTGTGGTCTTGGCCTTGATGTTTCACCATCTTCATCATTAGATGACAGCCCCTCAGAAAGTGAAGGGATCTCTCGCGAGGTTCAAGATGGCCCATTCGAATCTCCAACTAGCATTCTTCAGATGATGACATCATTTCCAGTTCAGGGAGGTCTCTTGCTATCGCCTCTTCCCGATGATCTTATTCACCTGACTCAGACGGGGAAGCCTGGAAGAGATAAAAAAACTGCTCGTGTCCAACAGAACAATCAAGACCGCCCGGTAGCAGCTTCTTTGAAAGGTGGACAAATGTTAGTTGAGAAGAAAATGTTAAAAGATGTAAATGACTTCTTGTCCGAATCGAGGAACACAAATAGAAGGGATTTTCTGAATGGCTCAAATACATCAAAGAAGACTTCAGAAATTGATACAGTAGCTTGCGAGGAGCTTGTTTCTAATACAATAAAGCTTCCGCTTCTAGCCAATTCGTACGACATATCAGGTGAAGCTACAAAAAGTATCAATAGGCCATCTGAAACATTAGTGGAGGCCGATAAAGTTGTCGCCCGGGACATACATTTTTATGGTCAACTGGAAGAGGGTTCAGCAGTAGAGCGTCCACTTACTATGGAGGGAGAGAAGCAAACTAATGGTTCATATGGAAAGGTTAGGGAGCCGAAAAAACCCAGCAAGTTTGATGATATTTCAATTTCTGCAAAAAAATCTGGAGAAATCAGGAGGGAGAAAACAGTTGACTTGATCGAGGCTGCCTCAAAGGGAAAAAATGTTTCGAACGGTGATCAAATTGATCCTCTTAAGCAGAATGCTAATCATAAAACTGCACCGCATGCACATAGCAACTTGAAGCATACTTCAGGAAAGGATAATTTATTCCCCGAAGACAAAAAGAAATCGAAGTTTAGTCAAACTGATAGTATCCCCAATGGGGAGGTTTCAAAACGTAGTATGAAGGCTGGCTCTTCAGGTTCCAAAACAAAGAGTATTCATAAAGCTGATAACATTTCAACCAGAACAGAAATTGAAGATCACAAGCCACAGGACTCTAGAAAAGCTAAAGATAGATACCGAGATTTCTTTGGGGAAATGGAAGAAGATGATAATCTCATAAATGCATTAGAGATTCCTTGTGAGGATCGACTAAATCACTCTGATGCATTCGAAAAACCAACGCCTGTTATTCCTGCATCAAAGGAGAGATTATCTGTTGAGAACGTGGGGAAGTCATTGGAAGCAAAAGCATTTCCAAAAGTAGCCATGAATCCTGTAAGTGGGAAAGTAACTGATGCAGCTTCTTCTGCTGCAGTGGACAATGTAACTCCACAAGACAACTGGGTTTGTTGCGACACGTGCCAACAATGGCGGCTTCTTCCATTAGGCACTAATCCTTCCAACCTACCTGAGAAGTGGACCTGCAGCATGCTTGATTGGCTTCCTGGAATGAACAATTGTTTGCTTAGTGAGGAGGAAACAACAAAAGCTCTAATTGCCCGGTCCCAAGCACCTGCTGCTCTTGAGGGTAATATTTACAGTAATCTGAATGGAGTTATGCTGGGAATGACCAATGCTCGACCATCTGGTCAAAATCACCGTCATTACGAATTTCATGCACTGCCTGGTGGTGGAAAAAAGAAGCATGGAGCAAAAGAAAGACCAAGTTCAACACTTAAAGGGGATGCCCCTCAGTTATCAAACCCAAAGAAGCATGAAGGAGCAATGAAAAGCAGAAGTTTTGATGATGTAAACCAGTTGCCTATTGGAGATGAAGCTAATTTTCGTCATTTAAACAAATCTGGTGATGTTCTTGTTGAGAAGCACAAGCCTAAGTACAAAGAGAAGCAGGAATCCGATATCCTATCTGAAGGAGGTGCTACCAAGATTTTAAAGACTAAAAACAGAAAAGTGAAAGAACATGATTACTCTAGACCTTCAAAGAAAATTAGAACTGATGGTTTGGATCTGACTGATGAAGACCAGATATCAAGTCACAGTGGGCCTGTTGTGAAGGTTGGCGCAATTTTGAGCACTGGATTTCCTTCTGCATCAGGTGGAACTAGTAAGTCTAAAAATACCGACCGTTCTTCAAAGGACTCAAAATATAACACAAATATCATCCACAGAGTACTCAATGATAAGAGAGAAAACAAACTGCTGGTTGCTATGGATGATGATGGAGTAAGTGGTAGCACTAAAAGCAATTCAAAGAAGAGAAAAGTGAAAGCACCCTCGGATATTCGAACTAATTCTGGGTCCCTCAATGGTTCTGGCTATCTCCCACAGAAGAGAGATTATGTTACGGATTTGAGTGATAATGACCATAGGAAGGAGAAAAAGCCAAAGATATCTAAGCCTCTAGGTAAAGAAACCAGTGGTAGAAAAGATAAAAAAGGTTCTCATTCTAAGAACTGGCCACACGGACAAGATGTAGGGAGCACTCTTTCACATCGGAGTTTGGATGGTGTGGATTTTTTGAAAAGGGATTTTGGTGCGATACAACCTTCTCTTGTAGCCACTTCAAGTTCTTCTAAGATATCTGGTTCACATAAAACGAAATCCAGTTTTCAGGACAACAAAGGATCGCCGGTAGAATCTGTTTCTTCATCACCTATGAGAATACCTAACCGAGATAAGATTTCATGGTCATCTAGGGAAGGTAAGGATTTTATGGATGGTGGTCTTACAAGGTGCTCAGATGGGGAAGAAGAGTATGGTGGTAGTGACCGCTCTGGAACTGGTAGCAAGAAGAAGTCTATCGTGGCTCATCACAGGTCTTCAAAGTCGTCCCCCTTGATCGATACTGTTAACAAAGATGTAAGTAGTATTTCAGGGAAAAAAGCTAAAACAAAGGAGAAGTCTTCTTCTGATGTCCCAAATTGCGGCTTTCCTAATGGTAATCTTGGCAATTCAGAAGTTGTTCATAGATCAAATGAAATTCGACATAGGGGCAGTGAGACACATCCAGTCAAAACCGGAAATGGTTTATCTTCACAGTTGAAGGACAAGAGTGGGAGCTATGGTTTAGACGTTGGCATGGATAAGGAAAGGGTTCCTTATTCCCATGATGATTTGCAGGGAAGGTCTCCTTCACATTCTGATTTGAAGGTTAAGAATGCTAAACACAAGTTACCAGACAACTCTAAGATCAGATCTGAAGATGCTAGGAAGGATGGTTCAGGAAAACTGTCGGTTGAACGGGGTAAAAGGGAAAATGAGCTAAATTTTGTCAAACATGAAGGTCCAGATTCTACGCTAGATAGCAATTACAAAGAGAATGTAGTTTTGTCTGCAAGGAAGAATCAGCAACAACATTGCAATGGTACTGCTGCAAAGAGTTCCCCTTATCAGAAAAATGACCAATTTGAAAATTTCTCTGGAAAAAGTACACCAGCACCATTACCGACATCAGGAGAACTTCGAAATCAGATGCTGCATTGCCCCCCCTCATCAGGGAGTGGAAAAGGAAACACGACGGATATTTTGCATGTAGATGCTTCAGGAATCAATGATGTGTCAAAGGGGAAAAAGCATGTTAAGAGTCGTCAAAAGGAAGCTCAGACCAATGGCTCAAGACATTCCACTCCCAATGAACGGGTGCCCATTGATGCGCCAAGTCCAGCTAGAAGGGACTCCTCCAACCAGGCTGCTACCAAAGCTATGAAAGAAGCTAAAGACTTGAAACATCTTGCTGATCGTTTTAAGAATTCTGGGTCCAATCATGAATCTATTGGACTTTATTTCCAAGCAGCCCTTAAGTTTCTTTATGGAGCCTCTTTGCTTGAGTCGTCCAGCAACGAGTCTGCCAAACAATCAATGCAAATATACAGTAGCACTGCAAAACTATGCGAGTTTTGTGCTCATGAGTATGAAAAAATCAAAGACATGGCTGCAGCTGCTTTGGCATACAAATGCATGGAAGTAGCTTACATGAGGGTGATTTATTCTTCTCATAACAGTGCAATCAGAGACTGCCATGACTTGCAGACGCAAATCGGTCCTTCGGGAGAATCTCCATCACCTGCCTCTGATGTTGATAACGTAAACAACCCTGCTGTAGCAGACAAAGTTGCTCTTTCGAAGGGTGTCAGCTCGAGTCGAGCTACTGGGTCCCATGTCATTCCTGCTAAAAGCCGTCCCAATTTTGTACGGCTGCTTAGTTATGCACAGGATGTAAATTTTGCCATGGAAGCATCGAGAAAGTCACGAATTGCTTTTGCAGCTGCAAATGCGAGCTCAGGTGGGACAACCAATAAGGAGGGTATCTCTTGCATCAAAACGGCCCTTGATTTTAACTTTCAAGATGTGGAAGGCCTGCTGACTCTAGTACGGGTTGCAATGGACGGAATTAACCGTTGA 4932 42.03 MEDTELEEGEACSYQNNGDFDSNIDPDVALSYIDVKIQHVLGHFQKDFEGGVSAENLGAKFGGYGSFLPSYQRSPVWSHSKTPPKGSNCISSRSPNNFQHEVGHNNSVVSSTTPHSIRPGPPSTSSTSLPITKGPNLNESSKQEVCTSFRHVDELASGYGCVNNKSTTSSDQKSLKVRIKVGSDNLSTRKNDAIYCGLGLDVSPSSSLDDSPSESEGISREVQDGPFESPTSILQMMTSFPVQGGLLLSPLPDDLIHLTQTGKPGRDKKTARVQQNNQDRPVAASLKGGQMLVEKKMLKDVNDFLSESRNTNRRDFLNGSNTSKKTSEIDTVACEELVSNTIKLPLLANSYDISGEATKSINRPSETLVEADKVVARDIHFYGQLEEGSAVERPLTMEGEKQTNGSYGKVREPKKPSKFDDISISAKKSGEIRREKTVDLIEAASKGKNVSNGDQIDPLKQNANHKTAPHAHSNLKHTSGKDNLFPEDKKKSKFSQTDSIPNGEVSKRSMKAGSSGSKTKSIHKADNISTRTEIEDHKPQDSRKAKDRYRDFFGEMEEDDNLINALEIPCEDRLNHSDAFEKPTPVIPASKERLSVENVGKSLEAKAFPKVAMNPVSGKVTDAASSAAVDNVTPQDNWVCCDTCQQWRLLPLGTNPSNLPEKWTCSMLDWLPGMNNCLLSEEETTKALIARSQAPAALEGNIYSNLNGVMLGMTNARPSGQNHRHYEFHALPGGGKKKHGAKERPSSTLKGDAPQLSNPKKHEGAMKSRSFDDVNQLPIGDEANFRHLNKSGDVLVEKHKPKYKEKQESDILSEGGATKILKTKNRKVKEHDYSRPSKKIRTDGLDLTDEDQISSHSGPVVKVGAILSTGFPSASGGTSKSKNTDRSSKDSKYNTNIIHRVLNDKRENKLLVAMDDDGVSGSTKSNSKKRKVKAPSDIRTNSGSLNGSGYLPQKRDYVTDLSDNDHRKEKKPKISKPLGKETSGRKDKKGSHSKNWPHGQDVGSTLSHRSLDGVDFLKRDFGAIQPSLVATSSSSKISGSHKTKSSFQDNKGSPVESVSSSPMRIPNRDKISWSSREGKDFMDGGLTRCSDGEEEYGGSDRSGTGSKKKSIVAHHRSSKSSPLIDTVNKDVSSISGKKAKTKEKSSSDVPNCGFPNGNLGNSEVVHRSNEIRHRGSETHPVKTGNGLSSQLKDKSGSYGLDVGMDKERVPYSHDDLQGRSPSHSDLKVKNAKHKLPDNSKIRSEDARKDGSGKLSVERGKRENELNFVKHEGPDSTLDSNYKENVVLSARKNQQQHCNGTAAKSSPYQKNDQFENFSGKSTPAPLPTSGELRNQMLHCPPSSGSGKGNTTDILHVDASGINDVSKGKKHVKSRQKEAQTNGSRHSTPNERVPIDAPSPARRDSSNQAATKAMKEAKDLKHLADRFKNSGSNHESIGLYFQAALKFLYGASLLESSSNESAKQSMQIYSSTAKLCEFCAHEYEKIKDMAAAALAYKCMEVAYMRVIYSSHNSAIRDCHDLQTQIGPSGESPSPASDVDNVNNPAVADKVALSKGVSSSRATGSHVIPAKSRPNFVRLLSYAQDVNFAMEASRKSRIAFAAANASSGGTTNKEGISCIKTALDFNFQDVEGLLTLVRVAMDGINR 1643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36360231 36372730 + Sed0012078.3 Sed09g1215 725979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1215 1643 ProSiteProfiles Zinc finger CW-type profile. 632 685 IPR011124 GO:0008270(InterPro)
Sed09g1215 1643 MobiDBLite consensus disorder prediction 1116 1134 - -
Sed09g1215 1643 Pfam CW-type Zinc Finger 637 683 IPR011124 GO:0008270(InterPro)
Sed09g1215 1643 MobiDBLite consensus disorder prediction 496 523 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 820 850 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 443 545 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 75 144 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 524 545 - -
Sed09g1215 1643 Pfam AFF4, C-terminal homology domain 1403 1537 IPR043640 GO:0005634(InterPro)
Sed09g1215 1643 MobiDBLite consensus disorder prediction 796 856 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 716 771 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 796 812 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 729 746 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 204 228 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 1295 1329 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 958 995 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 1181 1195 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 1028 1068 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 448 469 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 1070 1102 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 1028 1279 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 883 900 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 405 420 - -
Sed09g1215 1643 PANTHER CW-TYPE ZINC FINGER 1 1643 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 1361 1378 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 1358 1410 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 871 900 - -
Sed09g1215 1643 Gene3D - 622 687 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 913 1007 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 475 495 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 1206 1277 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 1146 1165 - -
Sed09g1215 1643 MobiDBLite consensus disorder prediction 400 420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1215 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1213 Sed-Chr9:36360231 Sed09g1215 Sed-Chr9:36360231 0.00E+00 dispersed
Sed09g1214 Sed-Chr9:36360231 Sed09g1215 Sed-Chr9:36360231 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g330 . . . . . . . Bma05g01045 Cmo08g01190 Cmo17g00302 . . . . . . . . . . . . . . Cla06g00492 Cam06g0529 Cec06g0529 Cco06g0533 Clacu06g0513 Cmu06g0515 Cre06g1286 . . Cone7ag0159 Cone4ag0157 . . Chy11g01485 . . . . . . . . . Sed09g1215 . . Cma08g01217 Cma17g00314 Car08g01090 Car17g00288 Cpe12g00266 Cpe17g00012 Bhi12g02083 Tan06g0860 Cmetu01g0223 Lac12g2393 Hepe03g0115 . Lcy13g0188 . . . . . . . Lsi09g01415 . . Cme11g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004464 2 0 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 5 1 2 42