Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1217 ATGGATGATAGCACAGGAAAATCCGAGAGAGTAGTCGAATTTCAGTTCGATTTCTCCACGGGTGGCGGCGGAGTTGGTGGCAGCACCGGTGGATCGAGTGAGGAAGCCGGTAGTGGAGGCGTCGGGATCGTAAAAGAGCAAGATCGGTTGCTTCCAATCGCAAACGTGGGGAGGATCATGAAGCACATTCTACCTTCAAACGCCAAAATCTCGAAAGAGGCCAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCGGAGAAGTGCCATAAGGAGAAGAGGAAGACTGTCAATGGTGATGATATTTGCTGTGCCTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGGTTAGGTATAGAGAAATGGAAGGGGAAAGAGCTCAACAAAATAAGGGTTTTTGTCAAAATAATAGTGATAATCATGATGCAAGAGAGAGATATAATTGA 489 46.83 MDDSTGKSERVVEFQFDFSTGGGGVGGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRIMKHILPSNAKISKEAKETMQECVSEFISFVTGEASEKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGFCQNNSDNHDARERYN 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36413865 36414353 + Sed0002109.1 Sed09g1217 725981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1217 162 MobiDBLite consensus disorder prediction 142 162 - -
Sed09g1217 162 FunFam Nuclear transcription factor Y subunit B-3 40 162 - -
Sed09g1217 162 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 43 149 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Sed09g1217 162 SUPERFAMILY Histone-fold 47 156 IPR009072 GO:0046982(InterPro)
Sed09g1217 162 Gene3D Histone, subunit A 43 162 IPR009072 GO:0046982(InterPro)
Sed09g1217 162 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 50 114 IPR003958 -
Sed09g1217 162 MobiDBLite consensus disorder prediction 17 40 - -
Sed09g1217 162 ProSitePatterns NF-YB/HAP3 subunit signature. 81 97 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed09g1217 162 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Sed09g1217 162 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Sed09g1217 162 PRINTS CCAAT-binding transcription factor subunit A signature 116 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2902 Sed-Chr8:40048530 Sed09g1217 Sed-Chr9:36413865 8.90E-41 dispersed
Sed09g1217 Sed-Chr9:36413865 Sed13g0981 Sed-Chr13:7580450 3.40E-34 dispersed
Sed04g0461 Sed-Chr4:3430089 Sed09g1217 Sed-Chr9:36413865 2.60E-26 transposed
Sed04g3965 Sed-Chr4:47580651 Sed09g1217 Sed-Chr9:36413865 4.00E-28 transposed
Sed07g0338 Sed-Chr7:2593575 Sed09g1217 Sed-Chr9:36413865 4.60E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39597 PF00808 CBFD_NFYB_HMF 6.50E-27 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1217 K08065 - csv:101204763 239.965