Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g1217 | ATGGATGATAGCACAGGAAAATCCGAGAGAGTAGTCGAATTTCAGTTCGATTTCTCCACGGGTGGCGGCGGAGTTGGTGGCAGCACCGGTGGATCGAGTGAGGAAGCCGGTAGTGGAGGCGTCGGGATCGTAAAAGAGCAAGATCGGTTGCTTCCAATCGCAAACGTGGGGAGGATCATGAAGCACATTCTACCTTCAAACGCCAAAATCTCGAAAGAGGCCAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCGGAGAAGTGCCATAAGGAGAAGAGGAAGACTGTCAATGGTGATGATATTTGCTGTGCCTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGGTTAGGTATAGAGAAATGGAAGGGGAAAGAGCTCAACAAAATAAGGGTTTTTGTCAAAATAATAGTGATAATCATGATGCAAGAGAGAGATATAATTGA | 489 | 46.83 | MDDSTGKSERVVEFQFDFSTGGGGVGGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRIMKHILPSNAKISKEAKETMQECVSEFISFVTGEASEKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGFCQNNSDNHDARERYN | 162 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 36413865 | 36414353 | + | Sed0002109.1 | Sed09g1217 | 725981 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g1217 | 162 | MobiDBLite | consensus disorder prediction | 142 | 162 | - | - | |
Sed09g1217 | 162 | FunFam | Nuclear transcription factor Y subunit B-3 | 40 | 162 | - | - | |
Sed09g1217 | 162 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 43 | 149 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) | |
Sed09g1217 | 162 | SUPERFAMILY | Histone-fold | 47 | 156 | IPR009072 | GO:0046982(InterPro) | |
Sed09g1217 | 162 | Gene3D | Histone, subunit A | 43 | 162 | IPR009072 | GO:0046982(InterPro) | |
Sed09g1217 | 162 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 50 | 114 | IPR003958 | - | |
Sed09g1217 | 162 | MobiDBLite | consensus disorder prediction | 17 | 40 | - | - | |
Sed09g1217 | 162 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 81 | 97 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed09g1217 | 162 | PRINTS | CCAAT-binding transcription factor subunit A signature | 97 | 115 | - | - | |
Sed09g1217 | 162 | PRINTS | CCAAT-binding transcription factor subunit A signature | 78 | 96 | - | - | |
Sed09g1217 | 162 | PRINTS | CCAAT-binding transcription factor subunit A signature | 116 | 134 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g2902 | Sed-Chr8:40048530 | Sed09g1217 | Sed-Chr9:36413865 | 8.90E-41 | dispersed | |
Sed09g1217 | Sed-Chr9:36413865 | Sed13g0981 | Sed-Chr13:7580450 | 3.40E-34 | dispersed | |
Sed04g0461 | Sed-Chr4:3430089 | Sed09g1217 | Sed-Chr9:36413865 | 2.60E-26 | transposed | |
Sed04g3965 | Sed-Chr4:47580651 | Sed09g1217 | Sed-Chr9:36413865 | 4.00E-28 | transposed | |
Sed07g0338 | Sed-Chr7:2593575 | Sed09g1217 | Sed-Chr9:36413865 | 4.60E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39597 | PF00808 | CBFD_NFYB_HMF | 6.50E-27 | CL0012 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g1217 | K08065 | - | csv:101204763 | 239.965 |