Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1221 ATGAGAAGCAAATCCAAAACCCTAAGAGCGGCGAGGAAGAAGATGAAGGGTAAATTGACGAGGCACTTGCAGGTTCAGTTAGGGCAGGTTTCGCTCGCCCCTATCCACCGCCCCTCTTCCGCCGCCTCGTTCCACGGCTCGCCGGAATCTGAAGCACCGGCGACGGTCAACGCTCCCGACGCTCTCCCCTCCTCTTCTCTTGGCTTTGACGACAGAGATTTCATTCTCAGCCAGGACTTCTTCTGCACCCCTGACTATATCACCCCGGACAATCAAAATCTGTTGATTGGTGTGGATTGCAACAAGGAAACCACTCCTTGCCCCAAATCACCAGAGAAGATTAATACTCTTAAAAGTAAGAGAAAAATACATGATGGTGTTTTAGTACATCCGTTGAGTCCAAGTTTATCTGGCCGGGACCAAGTTGTGGAGCTTGGAAATGACATTATTGGAACAGATGATGTGGTTATGGAGAAAGAGACACCGAAAATGCCTAAGAAACAGAGCTATGTATCTCAATCTGCAGTTGCTCTACGCTGTCGAGTTATGCCTCCTCCTTGCATGATGAATCCATACTTGAAAGATGCTTCAGAAGTAGGAGTCGACCCATTTGGTAATCAACGAACGAAATGTGCAGGATTCTTTCCTGCGCTGTTTAGTGGAGAGGGTCTTTCAAGGTATCACACTGATTTTCACGAGATAAAGCAAATAGGGACTGGAAATTTTAGCCGTGTCTTCAAAGTATTGAAGAGAATTGATGGTTGCTTATATGCTGTCAAACAAAGCACGAGGCCGTTGCATCAAGACATAGATAGGAGGAGAGCTTTGATGGAAGTTCAAGCTTTGGCAGCTTTAGGATCTCATGAAAACGTTGTTGGGTACTACTCCTCATGGTTAGAAAATGAGCAACTCTACATTCAAATGGAACTCTGTGATTGTAATTTATCCATTGGCAGGCATTCTCACCCGTTCTCTGTAGCTGATGCCCTGAAAGCCTTGTATCAGATTGCCAAAGCATTGCTATTTGTGCATGAGAAAGGAGTAGCTCATTTAGACGTGAAACCTGAGAATATTTATGTCAAAGATGGTGTTTATAAACTTGGTGATTTCGGATGCGCTACTCTTCTTGATAAAAGCCTACCGATTGAGGAGGGTGATGCACGCTATATGCCTCAAGAAATTCTGAATGAGAGATACGATTATCTCGACAAGGTTGATATTTTCTCCTTAGGCGCTTCTATTTATGAAATTGCTAGAGGTTCGACATTGCCAGAATCACATTTCATGAATCTAAAGGAGGGAAAATTGCCACTTCTTCCTGGTCATTCATTGCAATTTCAGAACTTAATTAAGGCTATGGTGGATCCCGACCCTGCTCGACGACCTTCGGCGAGGGAAATTCTCGAGAATCCCATATTTGATAAGGTTAGAAAGCATCCAAAATCATAG 1449 44.17 MRSKSKTLRAARKKMKGKLTRHLQVQLGQVSLAPIHRPSSAASFHGSPESEAPATVNAPDALPSSSLGFDDRDFILSQDFFCTPDYITPDNQNLLIGVDCNKETTPCPKSPEKINTLKSKRKIHDGVLVHPLSPSLSGRDQVVELGNDIIGTDDVVMEKETPKMPKKQSYVSQSAVALRCRVMPPPCMMNPYLKDASEVGVDPFGNQRTKCAGFFPALFSGEGLSRYHTDFHEIKQIGTGNFSRVFKVLKRIDGCLYAVKQSTRPLHQDIDRRRALMEVQALAALGSHENVVGYYSSWLENEQLYIQMELCDCNLSIGRHSHPFSVADALKALYQIAKALLFVHEKGVAHLDVKPENIYVKDGVYKLGDFGCATLLDKSLPIEEGDARYMPQEILNERYDYLDKVDIFSLGASIYEIARGSTLPESHFMNLKEGKLPLLPGHSLQFQNLIKAMVDPDPARRPSAREILENPIFDKVRKHPKS 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36478306 36485096 - Sed0010277.1 Sed09g1221 725985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1221 482 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 70 469 IPR050339 GO:0004672(PANTHER)|GO:0004713(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
Sed09g1221 482 Pfam Protein kinase domain 231 473 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1221 482 Gene3D Phosphorylase Kinase; domain 1 221 310 - -
Sed09g1221 482 MobiDBLite consensus disorder prediction 38 59 - -
Sed09g1221 482 SMART serkin_6 231 473 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1221 482 FunFam Wee1-like protein kinase 310 477 - -
Sed09g1221 482 ProSiteProfiles Protein kinase domain profile. 231 473 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1221 482 MobiDBLite consensus disorder prediction 1 20 - -
Sed09g1221 482 ProSitePatterns Protein kinases ATP-binding region signature. 237 260 IPR017441 GO:0005524(InterPro)
Sed09g1221 482 SUPERFAMILY Protein kinase-like (PK-like) 224 477 IPR011009 -
Sed09g1221 482 Gene3D Transferase(Phosphotransferase) domain 1 311 478 - -
Sed09g1221 482 FunFam WEE protein kinase 221 309 - -
Sed09g1221 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 348 360 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1221 Sed-Chr9:36478306 Sed02g1408 Sed-Chr2:50267252 1.70E-17 dispersed
Sed09g1221 Sed-Chr9:36478306 Sed12g1033 Sed-Chr12:6692017 1.40E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79774 PF00069 Pkinase 2.60E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1221 K06632 - csv:101213255 835.869