Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1246 ATGGATTCCAACTCCCAAATCCCAGAAAATTCAGAACCTATTTCGCCGGAGGACCAATCTCCGGCCGGTCCAGTTAACCCGCCGCCGCCGCTCGCCGTCGGTTCCCTCACTTTATCTCTCTCCGCGGCCATTCCCTCCAATTTTCTCGTCCACCCCAAATTTTCTGGGTTATTTTCTCGGCAGCCAAACAGGGATAGTGTCCCCACTCAAGCTTGTTCCCTTTCTCGCTTACCCATTTCTTGTTCTTCTCTTTGCCCACCAAAAATTTCCCTAAAATCCACCGTTTCTGCTAACCCTCTTCGAATCCCTCTCTCTTTCACTCCTCGCCGACCTTCAGAGCCCTCCAATGGCGCCGGCATTCGCCGAGCCACCATCGTTTGGTTCCGTAACGATCTTCGCATCCACGACAATGAATCCCTAACCTCCGCGAACAGCGATTCGATGTCGGTTTTGCCTGTTTACTGTTTCGATCCGAGAGATTACGGCAAATCCTCATCTGGGTTTGATAAAACTGGTCCTTACCGAGCTGCATTCGTGATCGAATCGGTTTCGGATTTGCGGAAGAATCTCCAGGCGAGGGGGTCTAATTTGGTTGTTAGAATTGGGAAGCCTGAGAGCGTTCTTGTTGAATTGGCTAGGGAAATTGGGGCTGATGGTGTTTATGCTCATTACGAGGTTTCGCGGGACGAAACGGAGACGGAGGAGAGGGTTGTGAGAGGGATGAAGGAGGAGAATGTTGAGGTTAAGTACTTTTGGGGAAGTACATTGTATCATGTTGATGATTTGCCTTTTAAATTGGAGGATATGCCTTCGAGCCATGGGGGTTTTAGAGAGAAAGTTAAAGGGTTGAGTGTGAGGAAGACGATTGAAGGTTTGGATAAGATGAAGGGGTTGCCTTCTCGTGGTGATGTTGAGATTGGGGATATTCCTTCTTTGTCTGATTTGGGTCTCAATCAACCTGTGGCAATGTCTAAGGAGGGATGGCTAGCTTCCAATACTTCTCAAGTGGGAGGTGAGACTGAAGCACTTAATAGGCTTCAAAAATATGCAGCTGAGTGTCGAGCCCAGCCGCCAAAGGCAACGAACAGCGGTGTTCAGAGTAGCATATATGGTGCTACCTTTTCGAACAAAATTTCTCCATGGCTAACCATGGGTTGTATTTCACCTCGATCGGTATATGATGAACTTAACAAAACTGTTTCCAGGAAGAATGATGGTGGCAATGGCACTGGAACAAACTGGCTGATGTTTGAGTTATTATGGAGGGATTTCTTCAGATTCATTACCAAGAAATACAACTCCACAAAGAAACAGCCTAATCCTTCTCCGGCCACAGCTTGCACCGGCGCCCTCGCATAG 1359 48.12 MDSNSQIPENSEPISPEDQSPAGPVNPPPPLAVGSLTLSLSAAIPSNFLVHPKFSGLFSRQPNRDSVPTQACSLSRLPISCSSLCPPKISLKSTVSANPLRIPLSFTPRRPSEPSNGAGIRRATIVWFRNDLRIHDNESLTSANSDSMSVLPVYCFDPRDYGKSSSGFDKTGPYRAAFVIESVSDLRKNLQARGSNLVVRIGKPESVLVELAREIGADGVYAHYEVSRDETETEERVVRGMKEENVEVKYFWGSTLYHVDDLPFKLEDMPSSHGGFREKVKGLSVRKTIEGLDKMKGLPSRGDVEIGDIPSLSDLGLNQPVAMSKEGWLASNTSQVGGETEALNRLQKYAAECRAQPPKATNSGVQSSIYGATFSNKISPWLTMGCISPRSVYDELNKTVSRKNDGGNGTGTNWLMFELLWRDFFRFITKKYNSTKKQPNPSPATACTGALA 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36633176 36637362 - Sed0003394.1 Sed09g1246 726010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1246 452 Gene3D HUPs 107 253 IPR014729 -
Sed09g1246 452 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 122 256 IPR006050 -
Sed09g1246 452 Pfam DNA photolyase 124 281 IPR006050 -
Sed09g1246 452 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 123 288 IPR036155 -
Sed09g1246 452 MobiDBLite consensus disorder prediction 1 17 - -
Sed09g1246 452 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 337 437 IPR036134 -
Sed09g1246 452 Gene3D - 254 435 - -
Sed09g1246 452 PANTHER CRYPTOCHROME 122 440 IPR002081 GO:0000719(PANTHER)|GO:0003677(PANTHER)|GO:0003904(PANTHER)|GO:0071949(PANTHER)
Sed09g1246 452 MobiDBLite consensus disorder prediction 1 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1246 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1654 Sed-Chr5:30433808 Sed09g1246 Sed-Chr9:36633176 3.90E-56 dispersed
Sed05g1655 Sed-Chr5:30433808 Sed09g1246 Sed-Chr9:36633176 3.90E-56 dispersed
Sed07g0299 Sed-Chr7:2377447 Sed09g1246 Sed-Chr9:36633176 3.10E-210 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g224 . Blo12g00706 . Bda03g00042 . . Bma04g00041 . . . Cma01g01604 . Car09g00443 . . . Cpe06g00379 . . . . . . . Cla05g01785 Cam05g1904 Cec05g1915 Cco05g1978 Clacu05g1897 Cmu05g1778 Cre05g1906 Cone4ag1845 Cone7ag1751 . . . Csa03g04387 Chy04g00315 . . . . . . Bpe04g00031 . . Sed09g1246 Cmo01g01651 Cmo09g00506 Cma09g00556 . . . . Cpe02g00374 Bhi09g02328 Tan01g3711 Cmetu01g0800 . Hepe01g2073 Mch11g0610 . . . . . . . . . . . Cme04g00288
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004799 3 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 0 1 2 1 1 41