Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1325 ATGGTGGCTGAAGCAGAGGTTGTTGCCTGTTCTAAGAGCCACCCTGTTTTGGAGGTGCCATATTTCAGTAAAGAGGCTCATCTTGTTGATGGAATTGAGTCCATTGATGGTGGGATTCTTCCGATGGATCCGAATCTCGATCGGGTTCGTGCTTCCGAATCGGTTTGTTCTAGCTCTCAATCGGATATGAGGCTAATTGTTGATACCGAGGTTGATTCGGCGATCGGGAGGGAGTTTCCGAGTCTCCGGTCGGGGAGCTGTGCGGATATTGGACCTAGGAGATGTATGGAAGATGAACATATAAGGATTGATGATTTGTGTACACATTTAGGGCCGGTGTTTAAGTTTCCCAAGCCAAGTGGTTTCTATGGGGTGTTTGATGGACATCGAGGACCTGAAGCAGCAGCTTTTATCAGAAAGAATGTTCTTAGACTCTGGTTTGAGGATGTTTGGTTTCACCAAATGCCTGATGTGGATGAAGTCTTGCCGGGGGAAGTCGAAAAATGTCTACAGAAAGCATTTCTTCTGGCTGATCAAGCTCTGGCTGATGATTCCGGTGTTAGTAATTCGTCCGGGACGACGGCCCTGACTGCTCTTGTGCTTGGAAGGCTTTTAATGGTGGCTAATGTTGGGGATTGCCGGGCAGTTCTCAGTCGGAATGGAGAGGCAGTAGATATGTCTCAAGACCACAAGCCGATTCACTCACCGGAGAAAGAACGGGTAGAAAAGTTGGGTGGCTTAGTCGATGGTGGCTATCTTAACGGTTTTCTATCGGTTTCCAGAGCCTTGGGGGATTGGGACATGAAGCTCCCCCATGGTTCTTCACCTCTCATTGCAGAACCAGAATGCAGGCAGGTGGTTCTAACAGAGGAGGATGAGTTCTTGATCATAGCCTGCGACGGGATTTGGGACGTCCTGTCGAGCCAGCAAGCAGTCGATGCCGTTCGACAGGGACTTCAGCGACACGACAACCCTGAGCGCTGCGCTCGTGATCTCGTCTTGCAGGCTTTGCGATTAGACTCATTCGATAATCTCACTGTTGTTATTGTCTGCTTCTCTAGTTTCCATCAGGACAACCCTGCGCTACCCGAGCAGCAAGAATTGAGATACTGTAGCCTATCTGCCCAGGCCCTTTGTAGGTTGCAGAGATGGTTGGATAAGAGTGGATGCCAATGA 1176 49.4 MVAEAEVVACSKSHPVLEVPYFSKEAHLVDGIESIDGGILPMDPNLDRVRASESVCSSSQSDMRLIVDTEVDSAIGREFPSLRSGSCADIGPRRCMEDEHIRIDDLCTHLGPVFKFPKPSGFYGVFDGHRGPEAAAFIRKNVLRLWFEDVWFHQMPDVDEVLPGEVEKCLQKAFLLADQALADDSGVSNSSGTTALTALVLGRLLMVANVGDCRAVLSRNGEAVDMSQDHKPIHSPEKERVEKLGGLVDGGYLNGFLSVSRALGDWDMKLPHGSSPLIAEPECRQVVLTEEDEFLIIACDGIWDVLSSQQAVDAVRQGLQRHDNPERCARDLVLQALRLDSFDNLTVVIVCFSSFHQDNPALPEQQELRYCSLSAQALCRLQRWLDKSGCQ 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37401446 37403247 + Sed0022251.1 Sed09g1325 726089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1325 391 SUPERFAMILY PP2C-like 78 354 IPR036457 -
Sed09g1325 391 FunFam Probable protein phosphatase 2C 22 68 355 - -
Sed09g1325 391 PANTHER PROTEIN PHOSPHATASE 2C 63 352 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed09g1325 391 CDD PP2Cc 83 352 IPR001932 -
Sed09g1325 391 Pfam Protein phosphatase 2C 90 344 IPR001932 -
Sed09g1325 391 ProSiteProfiles PPM-type phosphatase domain profile. 83 352 IPR001932 -
Sed09g1325 391 SMART PP2C_SIG_2 98 352 IPR001932 -
Sed09g1325 391 SMART PP2C_4 73 350 IPR001932 -
Sed09g1325 391 Gene3D - 68 359 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0625 Sed-Chr9:7796229 Sed09g1325 Sed-Chr9:37401446 4.10E-96 dispersed
Sed09g1325 Sed-Chr9:37401446 Sed13g2205 Sed-Chr13:26558900 7.70E-85 dispersed
Sed07g0626 Sed-Chr7:4735366 Sed09g1325 Sed-Chr9:37401446 3.30E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1325 K14803 - csv:101216626 637.876