Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1353 ATGGCGAGAACTAGGGTTCATGAGCCACTGCGAGCATTAGCGAATTTCAATAAATGCACCATTCGCCTCACTGAGATTTTCGGAAGGGCGACCAGGTTCATTTTGGGCTTCTTCATCATGGTGTGTCTTTGCAATGGCATCCATTACTTTTTGAAGCCGTTTTCTCAGCCTCAGATTAGCTCTGATACCATTGTAGGTTTGGTTGTAGGCAACCTCATAAGGAAACAACTCGAGCTACCAACGGTTAAGACCTTACGTTATATGGTTGACTTCGCTATGATATGTTATATGTTTGTGCTGGGATTGGAGATGGATCCATATGTACTCTTCAAAGCACCTACACGTGATGCTAAAGTAGCTTATGCTGGAATGATTTCAACACTCATCTTAGCCTGCTCCATAACCCCATTTATCAGCTTTTCAAAGACGAAAGAGATCAGTTTCATCCTCTCCCTCTCAATTGTCCTCTCTAGCACAGCTTCTCCTGTGCTAACCCGTTCAATCACCAGCCTTAAAATAGGAAAGTCAGATATAGGCCGGCTCGTTATTGCTGCTGGAATGCATTCTGATTTTATATCGACTCTCATTATCTGTATCGGTTATCTCTTTTGCAAATGCCAAGAGACACGCATCTCCATTATAAAAGGTTTTCAATTAGGTGCTGCGTTACTGATCCAGTCAATATTTGTAGCGAAGGTTTCACCGATATTCATTAACTGGGTAAATACCGAAAACCCTGATGGTAAACCTATGAAAGGTCCTCACCTGGTTCTTGCAGTTGCTTTCATGGCCTTCCTTTGCAGCTGCCCTACTATGTTTGGTTACAATCCAATTCTCAGCGCATTCTTAGCTGGAACGTTTTTACCTCGAGAAGGTAGAGTATCGAGATGGGCAGTTGGAAAAATTAACTATCTGCTTACTACCGTGTTCTATCCCATCTTCTTCTTTTGGATGGGGGTTGAATCCAAGTTGAGTGACTTTGAACCTGAACAAATTATGACATGGGTCAGGTTAATTTTGCTTTTTGCTATTGCAACTGTAGGAAAAGTTGTTGGTACTGTCATTGCTGGGGCAATTTTGGGGTTTCATTGGCCTGAATCAGTAGCACTTGGGCTGCTATTAACCATGAAGGGCCATTTTCATATATACTTAGCCATTGCCGCACAAACAGCTGGAAAGACGACCACGTCCACTAGCATTGTGATGGTGATTGCGATATTCTTCACAATCGTGCATGCTCCAAAAGTTGTAGCACATATAATCAAAAGGGCAAGAAAACGCACACCTGCACATCGAATGGCGCTCCAATTGCTCGATCCATCAAGTGACCTTAAGCTATTGTTATGTCTACATGGACCTCAGAACACTACAGCAGCCATTAACATCATGGAGCTTTCTCGGGGTAGGGCTAACCCTGGAGTTATTGTATATGTTACAGACATGATTGAACTTACAGATGAAATAGCAGCCACATTAGTGCAAGGTGAAGGAGTGGACTCCATGACTGTAACCCACACAGGAGTGACACTAATAAGAGACCAAATTACTGCTGCAGTTCAGAGCTATGTAGATGAAAATAGAGAAGGAATTACCCTTAGAAGAATGCTAGCTCTCTCAACACTAAATAGTATGGCTCATGACATTTGCATTTTGGCCGAGGAATCGATGGGAGCTCTTATCATACTGCCATTCCATAAGACCCAGCGTGCAGATGGGTCGTTAAATGAGGGCCACACAGGCTTTCGCTACGTAAACCGTAAGGTTCTAAAGAATGCCCCCTGCTCTGTGGGAATCCTAGTGGATCGAGGTCTTGGAACAGTAGAGAAAATTTCTAGGTTGTGTGTATCACAGAATGTGGCAGTCATCTTCATTGGCGGTAAAGACGACCGAGAAGCATTAGTCTATGCGGGTCGAGTATCGAGGCATCCTGGAGTTAAACTCTCTGTGATTAGATTCTTGGTGGATGCTGATGCAGAAAATGCTGCAAGAAGAGCTGGGACTTACAGGGTAAGTGTTGCTGAGCAGGAAAAGGAAATGAAACTAGACGACGAATGCTTTGCTCGTTTTTATGAGCAACACGTAGCTGGTAAGCAGGTTGCTTATATCGAAAAGCACCTTGCCAGTTCCTCAGAAATGTATTCTACTTTGAAATCACTGGAAGGACAATATGCACTCATAATTGTGGGTCGAGGTGGGAAGGCGAACACGGTGTTAACTTTTGGGATGAATGACTGGCAGCAATGTCCAGAATTGGGTCCTATAGGGGATGTTCTTTCTGGGTCTGAATTTTATGTTAGGACCTCAGTTTTGATCATCCAACAACACAATCTAAAAGGAGAACTAGATGGACTTGATGATGATTTTTCTATTATGTTACCAAGAAACCAAGGATGTTAG 2397 43.14 MARTRVHEPLRALANFNKCTIRLTEIFGRATRFILGFFIMVCLCNGIHYFLKPFSQPQISSDTIVGLVVGNLIRKQLELPTVKTLRYMVDFAMICYMFVLGLEMDPYVLFKAPTRDAKVAYAGMISTLILACSITPFISFSKTKEISFILSLSIVLSSTASPVLTRSITSLKIGKSDIGRLVIAAGMHSDFISTLIICIGYLFCKCQETRISIIKGFQLGAALLIQSIFVAKVSPIFINWVNTENPDGKPMKGPHLVLAVAFMAFLCSCPTMFGYNPILSAFLAGTFLPREGRVSRWAVGKINYLLTTVFYPIFFFWMGVESKLSDFEPEQIMTWVRLILLFAIATVGKVVGTVIAGAILGFHWPESVALGLLLTMKGHFHIYLAIAAQTAGKTTTSTSIVMVIAIFFTIVHAPKVVAHIIKRARKRTPAHRMALQLLDPSSDLKLLLCLHGPQNTTAAINIMELSRGRANPGVIVYVTDMIELTDEIAATLVQGEGVDSMTVTHTGVTLIRDQITAAVQSYVDENREGITLRRMLALSTLNSMAHDICILAEESMGALIILPFHKTQRADGSLNEGHTGFRYVNRKVLKNAPCSVGILVDRGLGTVEKISRLCVSQNVAVIFIGGKDDREALVYAGRVSRHPGVKLSVIRFLVDADAENAARRAGTYRVSVAEQEKEMKLDDECFARFYEQHVAGKQVAYIEKHLASSSEMYSTLKSLEGQYALIIVGRGGKANTVLTFGMNDWQQCPELGPIGDVLSGSEFYVRTSVLIIQQHNLKGELDGLDDDFSIMLPRNQGC 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37589974 37595153 - Sed0002074.1 Sed09g1353 726117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1353 798 FunFam Cation/H(+) antiporter 28 31 430 - -
Sed09g1353 798 PANTHER CATION/H + ANTIPORTER 33 776 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Sed09g1353 798 Pfam Sodium/hydrogen exchanger family 47 420 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Sed09g1353 798 Gene3D - 30 431 IPR038770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1353 K26731 - - csv:101211645 1358.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1353 Sed-Chr9:37589974 Sed13g0816 Sed-Chr13:6035580 7.10E-85 dispersed
Sed07g0639 Sed-Chr7:4814645 Sed09g1353 Sed-Chr9:37589974 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1119 Blo06g00594 . . . . Bpe10g00541 . . . . . . . . Sed09g1353 . . Bhi09g00656 Tan06g0598 Cmetu01g0797 . . . . . . . . . . . . Cone20ag1063 . . Lsi02g02561 . . . . . . . . . . . . . . Cma08g00518 . Car08g00430 . . . . . . . . . . Cla09g00367 Cam09g0397 Cec09g0401 Cco09g0384 Clacu09g0400 . Cre09g0382 . . Chy01g01852 Cme01g02457
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g0021 . 11 815 Antiporter Super Family AT2G13620 70.4 0.0e+00 1137.1
Sed05g3866 . 11 799 Antiporter Super Family AT2G13620 69.9 0.0e+00 1101.7
Sed14g0469 . 76 810 Antiporter Super Family AT3G53720 67.9 3.7e-280 961.8
Sed13g0816 . 83 796 Antiporter Super Family AT3G53720 50.3 6.9e-186 648.7
Sed13g0817 . 83 796 Antiporter Super Family AT3G53720 50.3 6.9e-186 648.7
Sed13g0818 . 83 796 Antiporter Super Family AT3G53720 50.3 6.9e-186 648.7
Sed13g0816 . 1 779 Antiporter Super Family AT5G41610 69.3 2.7e-310 1062.0
Sed13g0817 . 1 779 Antiporter Super Family AT5G41610 69.3 2.7e-310 1062.0
Sed13g0818 . 1 779 Antiporter Super Family AT5G41610 69.3 2.7e-310 1062.0
Sed07g1579 . 1 784 Antiporter Super Family AT5G41610 68.1 4.9e-299 1024.6
Sed07g1580 . 3 760 Antiporter Super Family AT5G41610 65.8 1.1e-287 986.9
Sed14g0469 . 8 816 Antiporter Super Family AT5G41610 50.4 1.6e-209 727.2
Sed07g1579 . 10 782 Antiporter Super Family AT4G23700 65.5 2.5e-287 985.7
Sed07g1580 . 3 777 Antiporter Super Family AT4G23700 64.7 9.0e-285 977.2
Sed13g0816 . 9 779 Antiporter Super Family AT4G23700 64.8 3.4e-284 975.3
Sed13g0817 . 9 779 Antiporter Super Family AT4G23700 64.8 3.4e-284 975.3
Sed13g0818 . 9 779 Antiporter Super Family AT4G23700 64.8 3.4e-284 975.3
Sed13g0816 . 3 779 Antiporter Super Family AT3G17630 64.6 6.5e-280 961.1
Sed13g0817 . 3 779 Antiporter Super Family AT3G17630 64.6 6.5e-280 961.1
Sed13g0818 . 3 779 Antiporter Super Family AT3G17630 64.6 6.5e-280 961.1
Sed07g1579 . 4 782 Antiporter Super Family AT3G17630 63.2 8.5e-272 934.1
Sed07g1580 . 3 758 Antiporter Super Family AT3G17630 63.6 9.1e-266 914.1
Sed14g0469 . 2 798 Antiporter Super Family AT3G17630 51.3 1.6e-206 717.2
Sed07g1580 . 3 763 Antiporter Super Family AT1G64170 59.2 6.2e-238 821.6
Sed07g1579 . 15 784 Antiporter Super Family AT1G64170 57.4 1.1e-237 820.8
Sed13g0816 . 1 782 Antiporter Super Family AT1G64170 56.1 1.4e-234 810.4
Sed13g0817 . 1 782 Antiporter Super Family AT1G64170 56.1 1.4e-234 810.4
Sed13g0818 . 1 782 Antiporter Super Family AT1G64170 56.1 1.4e-234 810.4
Sed01g0021 . 11 815 Antiporter Super Family AT2G13620 70.4 0.0e+00 1137.1
Sed05g3866 . 11 799 Antiporter Super Family AT2G13620 69.9 0.0e+00 1101.7
Sed07g1580 . 3 763 Antiporter Super Family AT1G64170 59.2 6.2e-238 821.6
Sed07g1579 . 15 784 Antiporter Super Family AT1G64170 57.4 1.1e-237 820.8
Sed13g0816 . 1 782 Antiporter Super Family AT1G64170 56.1 1.4e-234 810.4
Sed13g0817 . 1 782 Antiporter Super Family AT1G64170 56.1 1.4e-234 810.4
Sed13g0818 . 1 782 Antiporter Super Family AT1G64170 56.1 1.4e-234 810.4
Sed07g1579 . 10 782 Antiporter Super Family AT4G23700 65.5 2.5e-287 985.7
Sed07g1580 . 3 777 Antiporter Super Family AT4G23700 64.7 9.0e-285 977.2
Sed13g0816 . 9 779 Antiporter Super Family AT4G23700 64.8 3.4e-284 975.3
Sed13g0817 . 9 779 Antiporter Super Family AT4G23700 64.8 3.4e-284 975.3
Sed13g0818 . 9 779 Antiporter Super Family AT4G23700 64.8 3.4e-284 975.3
Sed13g0816 . 1 779 Antiporter Super Family AT5G41610 69.3 2.7e-310 1062.0
Sed13g0817 . 1 779 Antiporter Super Family AT5G41610 69.3 2.7e-310 1062.0
Sed13g0818 . 1 779 Antiporter Super Family AT5G41610 69.3 2.7e-310 1062.0
Sed07g1579 . 1 784 Antiporter Super Family AT5G41610 68.1 4.9e-299 1024.6
Sed07g1580 . 3 760 Antiporter Super Family AT5G41610 65.8 1.1e-287 986.9
Sed14g0469 . 8 816 Antiporter Super Family AT5G41610 50.4 1.6e-209 727.2
Sed13g0816 . 3 779 Antiporter Super Family AT3G17630 64.6 6.5e-280 961.1
Sed13g0817 . 3 779 Antiporter Super Family AT3G17630 64.6 6.5e-280 961.1
Sed13g0818 . 3 779 Antiporter Super Family AT3G17630 64.6 6.5e-280 961.1
Sed07g1579 . 4 782 Antiporter Super Family AT3G17630 63.2 8.5e-272 934.1
Sed07g1580 . 3 758 Antiporter Super Family AT3G17630 63.6 9.1e-266 914.1
Sed14g0469 . 2 798 Antiporter Super Family AT3G17630 51.3 1.6e-206 717.2
Sed14g0469 . 76 810 Antiporter Super Family AT3G53720 67.9 3.7e-280 961.8
Sed13g0816 . 83 796 Antiporter Super Family AT3G53720 50.3 6.9e-186 648.7
Sed13g0817 . 83 796 Antiporter Super Family AT3G53720 50.3 6.9e-186 648.7
Sed13g0818 . 83 796 Antiporter Super Family AT3G53720 50.3 6.9e-186 648.7
Sed09g1353 . 47 791 Antiporter Super Family AT3G52080 53.9 3.3e-231 799.3
Sed07g0639 . 30 787 Antiporter Super Family AT3G52080 53.7 1.2e-230 797.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008009 0 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34