Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1381 ATGAATGAGGATAGACCATTGGAACTACATTACGTTGATACCGGCTTCCCTTACACGGTTTCGGAGAACTTCATGAACTTTTTTGAAGGGTTTCACCAGCATCAAGTGCCTGCTTATGCCAATGCTGTGCCATTACTTGATCAGGGGAATGCATACTGGTCAATGAATATGCAACCTTACAGATTTGAAGTATCCGATCATGGGAACACGTATTACGGCCATTCGGAGGAAAGTCACCATTTACCACCTTCAATGGATGTTGGTGGAAGGGAATGGGAGTATCCGACTGTTAATGTCGAAGTTCCCGAACCGACATTGCCTTCTGTGGAGGAGGATGTTGCAGATGCTCATTCCATACCTGAAGAATGTGATTTAAGCCATGAGGAGGAGACCAGTACTTCTCAAGTTACATGGCAAGACGAAATCGATCCTGACCACATGACCTATGAGGAACTGTTGGACTTGGGCGAATCGGTTGGAACTGAAAGTCGAGGTCTTTCAAAAGAACAAATAAGTTTGCTTCCCACTGCGAAATGCAAGTTAACAAGCTTTTTCTCGAGAAAAAAGCTAGATGAAAGATGTGTGATTTGCCAAATGAGGTACAAGAGAGGGGACAGACAAATAAAACTACCCTGCAAGCATTTCTACCACAACAAATGCATAACCAAATGGCTCACCATTAACAAAATATGTCCGATCTGCAACATCGAGGTGTTCGGAGATGAAAGCACGTCGGGCAGCGATAATCGACAGTAG 756 44.05 MNEDRPLELHYVDTGFPYTVSENFMNFFEGFHQHQVPAYANAVPLLDQGNAYWSMNMQPYRFEVSDHGNTYYGHSEESHHLPPSMDVGGREWEYPTVNVEVPEPTLPSVEEDVADAHSIPEECDLSHEEETSTSQVTWQDEIDPDHMTYEELLDLGESVGTESRGLSKEQISLLPTAKCKLTSFFSRKKLDERCVICQMRYKRGDRQIKLPCKHFYHNKCITKWLTINKICPICNIEVFGDESTSGSDNRQ 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37749289 37752950 - Sed0001722.1 Sed09g1381 726145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1381 251 SMART ring_2 194 234 IPR001841 -
Sed09g1381 251 Pfam Ring finger domain 193 235 IPR001841 -
Sed09g1381 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 239 IPR013083 -
Sed09g1381 251 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Sed09g1381 251 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 239 IPR033276 GO:0004842(PANTHER)|GO:0004842(InterPro)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0046621(InterPro)|GO:0048437(PANTHER)
Sed09g1381 251 FunFam E3 ubiquitin ligase BIG BROTHER 156 239 - -
Sed09g1381 251 SUPERFAMILY RING/U-box 193 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1135 Sed-Chr5:11433037 Sed09g1381 Sed-Chr9:37749289 2.10E-40 dispersed
Sed05g1136 Sed-Chr5:11433037 Sed09g1381 Sed-Chr9:37749289 6.70E-41 dispersed
Sed07g2389 Sed-Chr7:39700239 Sed09g1381 Sed-Chr9:37749289 3.60E-22 dispersed
Sed07g2390 Sed-Chr7:39700239 Sed09g1381 Sed-Chr9:37749289 6.50E-19 dispersed
Sed09g1381 Sed-Chr9:37749289 Sed09g1384 Sed-Chr9:37749289 2.90E-149 dispersed
Sed09g1381 Sed-Chr9:37749289 Sed09g1382 Sed-Chr9:37749289 2.90E-149 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1381 K19045 - csv:101210160 473.011