Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g1381 | ATGAATGAGGATAGACCATTGGAACTACATTACGTTGATACCGGCTTCCCTTACACGGTTTCGGAGAACTTCATGAACTTTTTTGAAGGGTTTCACCAGCATCAAGTGCCTGCTTATGCCAATGCTGTGCCATTACTTGATCAGGGGAATGCATACTGGTCAATGAATATGCAACCTTACAGATTTGAAGTATCCGATCATGGGAACACGTATTACGGCCATTCGGAGGAAAGTCACCATTTACCACCTTCAATGGATGTTGGTGGAAGGGAATGGGAGTATCCGACTGTTAATGTCGAAGTTCCCGAACCGACATTGCCTTCTGTGGAGGAGGATGTTGCAGATGCTCATTCCATACCTGAAGAATGTGATTTAAGCCATGAGGAGGAGACCAGTACTTCTCAAGTTACATGGCAAGACGAAATCGATCCTGACCACATGACCTATGAGGAACTGTTGGACTTGGGCGAATCGGTTGGAACTGAAAGTCGAGGTCTTTCAAAAGAACAAATAAGTTTGCTTCCCACTGCGAAATGCAAGTTAACAAGCTTTTTCTCGAGAAAAAAGCTAGATGAAAGATGTGTGATTTGCCAAATGAGGTACAAGAGAGGGGACAGACAAATAAAACTACCCTGCAAGCATTTCTACCACAACAAATGCATAACCAAATGGCTCACCATTAACAAAATATGTCCGATCTGCAACATCGAGGTGTTCGGAGATGAAAGCACGTCGGGCAGCGATAATCGACAGTAG | 756 | 44.05 | MNEDRPLELHYVDTGFPYTVSENFMNFFEGFHQHQVPAYANAVPLLDQGNAYWSMNMQPYRFEVSDHGNTYYGHSEESHHLPPSMDVGGREWEYPTVNVEVPEPTLPSVEEDVADAHSIPEECDLSHEEETSTSQVTWQDEIDPDHMTYEELLDLGESVGTESRGLSKEQISLLPTAKCKLTSFFSRKKLDERCVICQMRYKRGDRQIKLPCKHFYHNKCITKWLTINKICPICNIEVFGDESTSGSDNRQ | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 37749289 | 37752950 | - | Sed0001722.1 | Sed09g1381 | 726145 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g1381 | 251 | SMART | ring_2 | 194 | 234 | IPR001841 | - | |
Sed09g1381 | 251 | Pfam | Ring finger domain | 193 | 235 | IPR001841 | - | |
Sed09g1381 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 156 | 239 | IPR013083 | - | |
Sed09g1381 | 251 | ProSiteProfiles | Zinc finger RING-type profile. | 194 | 235 | IPR001841 | - | |
Sed09g1381 | 251 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 239 | IPR033276 | GO:0004842(PANTHER)|GO:0004842(InterPro)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0046621(InterPro)|GO:0048437(PANTHER) | |
Sed09g1381 | 251 | FunFam | E3 ubiquitin ligase BIG BROTHER | 156 | 239 | - | - | |
Sed09g1381 | 251 | SUPERFAMILY | RING/U-box | 193 | 239 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1135 | Sed-Chr5:11433037 | Sed09g1381 | Sed-Chr9:37749289 | 2.10E-40 | dispersed | |
Sed05g1136 | Sed-Chr5:11433037 | Sed09g1381 | Sed-Chr9:37749289 | 6.70E-41 | dispersed | |
Sed07g2389 | Sed-Chr7:39700239 | Sed09g1381 | Sed-Chr9:37749289 | 3.60E-22 | dispersed | |
Sed07g2390 | Sed-Chr7:39700239 | Sed09g1381 | Sed-Chr9:37749289 | 6.50E-19 | dispersed | |
Sed09g1381 | Sed-Chr9:37749289 | Sed09g1384 | Sed-Chr9:37749289 | 2.90E-149 | dispersed | |
Sed09g1381 | Sed-Chr9:37749289 | Sed09g1382 | Sed-Chr9:37749289 | 2.90E-149 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g1381 | K19045 | - | csv:101210160 | 473.011 |