Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1383 ATGCCAATGCTGTGCCATTACTTGATCAGATTTGAAGTATCCGATCATGGGAACACGTATTACGGCCATTCGGAGGAAAGTCACCATTTACCACCTTCAATGGATGTTGGTGGAAGGGAATGGGAGTATCCGACTGTTAATGTCGAAGTTCCCGAACCGACATTGCCTTCTGTGGAGGAGGATGTTGCAGATGCTCATTCCATACCTGAAGAATGTGATTTAAGCCATGAGGAGGAGACCAGTACTTCTCAAGTTACATGGCAAGACGAAATCGATCCTGACCACATGACCTATGAGGAACTGTTGGACTTGGGCGAATCGGTTGGAACTGAAAGTCGAGGTCTTTCAAAAGAACAAATAAGTTTGCTTCCCACTGCGAAATGCAAGTTAACAAGCTTTTTCTCGAGAAAAAAGCTAGATGAAAGATGTGTGATTTGCCAAATGAGGTACAAGAGAGGGGACAGACAAATAAAACTACCCTGCAAGCATTTCTACCACAACAAATGCATAACCAAATGGCTCACCATTAACAAAATATGTCCGATCTGCAACATCGAGGTGTTCGGAGATGAAAGCACGTCGGGCAGCGATAATCGACAGTAG 603 44.28 MPMLCHYLIRFEVSDHGNTYYGHSEESHHLPPSMDVGGREWEYPTVNVEVPEPTLPSVEEDVADAHSIPEECDLSHEEETSTSQVTWQDEIDPDHMTYEELLDLGESVGTESRGLSKEQISLLPTAKCKLTSFFSRKKLDERCVICQMRYKRGDRQIKLPCKHFYHNKCITKWLTINKICPICNIEVFGDESTSGSDNRQ 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37749289 37752571 - Sed0001722.3 Sed09g1383 726147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1383 200 ProSiteProfiles Zinc finger RING-type profile. 143 184 IPR001841 -
Sed09g1383 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 188 IPR013083 -
Sed09g1383 200 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 19 188 IPR033276 GO:0004842(PANTHER)|GO:0004842(InterPro)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0046621(InterPro)|GO:0048437(PANTHER)
Sed09g1383 200 SUPERFAMILY RING/U-box 142 188 - -
Sed09g1383 200 SMART ring_2 143 183 IPR001841 -
Sed09g1383 200 Pfam Ring finger domain 142 184 IPR001841 -
Sed09g1383 200 FunFam E3 ubiquitin ligase BIG BROTHER 105 188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1383 Sed-Chr9:37749289 Sed13g2089 Sed-Chr13:25620697 6.20E-14 dispersed
Sed09g1382 Sed-Chr9:37749289 Sed09g1383 Sed-Chr9:37749289 6.90E-111 tandem
Sed09g1383 Sed-Chr9:37749289 Sed09g1384 Sed-Chr9:37749289 2.50E-111 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1383 K19045 - csv:101210160 365.54