Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1384 ATGAATGAGGATAGACCATTGGAACTACATTACGTTGATACCGGCTTCCCTTACACGGTTTCGGAGAACTTCATGAACTTTTTTGAAGGGTTTCACCAGCATCAAGTGCCTGCTTATGCCAATGCTGTGCCATTACTTGATCAGGGGAATGCATACTGGTCAATGAATATGCAACCTTACAGATTTGAAGTATCCGATCATGGGAACACGTATTACGGCCATTCGGAGGAAAGTCACCATTTACCACCTTCAATGGATGTTGGTGGAAGGGAATGGGAGTATCCGACTGTTAATGTCGAAGTTCCCGAACCGACATTGCCTTCTGTGGAGGAGGATGTTGCAGATGCTCATTCCATACCTGAAGAATGTGATTTAAGCCATGAGGAGGAGACCAGTACTTCTCAAGTTACATGGCAAGACGAAATCGATCCTGACCACATGACCTATGAGGAACTGTTGGACTTGGGCGAATCGGTTGGAACTGAAAGTCGAGGTCTTTCAAAAGAACAAATAAGTTTGCTTCCCACTGCGAAATGCAAGTTAACAAGCTTTTTCTCGAGAAAAAAGCTAGATGAAAGATGTGTGATTTGCCAAATGAGGTACAAGAGAGGGGACAGACAAATAAAACTACCCTGCAAGCATTTCTACCACAACAAATGCATAACCAAATGGCTCACCATTAACAAAATATGTCCGATCTGCAACATCGAGGTGTTCGGAGATGAAAGCACGTCGGGCAGCGATAATCGACAGTAG 756 44.05 MNEDRPLELHYVDTGFPYTVSENFMNFFEGFHQHQVPAYANAVPLLDQGNAYWSMNMQPYRFEVSDHGNTYYGHSEESHHLPPSMDVGGREWEYPTVNVEVPEPTLPSVEEDVADAHSIPEECDLSHEEETSTSQVTWQDEIDPDHMTYEELLDLGESVGTESRGLSKEQISLLPTAKCKLTSFFSRKKLDERCVICQMRYKRGDRQIKLPCKHFYHNKCITKWLTINKICPICNIEVFGDESTSGSDNRQ 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37749289 37753222 - Sed0001722.4 Sed09g1384 726148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1384 251 SMART ring_2 194 234 IPR001841 -
Sed09g1384 251 Pfam Ring finger domain 193 235 IPR001841 -
Sed09g1384 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 239 IPR013083 -
Sed09g1384 251 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Sed09g1384 251 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 239 IPR033276 GO:0004842(PANTHER)|GO:0004842(InterPro)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0046621(InterPro)|GO:0048437(PANTHER)
Sed09g1384 251 FunFam E3 ubiquitin ligase BIG BROTHER 156 239 - -
Sed09g1384 251 SUPERFAMILY RING/U-box 193 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1381 Sed-Chr9:37749289 Sed09g1384 Sed-Chr9:37749289 2.90E-149 dispersed
Sed09g1382 Sed-Chr9:37749289 Sed09g1384 Sed-Chr9:37749289 2.90E-149 dispersed
Sed09g1384 Sed-Chr9:37749289 Sed13g2089 Sed-Chr13:25620697 7.80E-14 dispersed
Sed09g1383 Sed-Chr9:37749289 Sed09g1384 Sed-Chr9:37749289 2.50E-111 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1384 K19045 - csv:101210160 473.011