Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1385 ATGGCTGATCAGGTTCAGCATCCCACCATCTATCAGAAGGTTGCTGGTCAGCTCTCCCTTCAGTCAAGGGTTGCTTTGGGATTCCGTGCTAGCGATGACGGCTTTAGGAACCCTGCACTTTATCAGAGGCGGGCGTCAATGAGCAATTACTCAAATGCTGCTTTCCAATACCCTGCCGTGCAATCCTGTGTTGCTACAACTGATCTTTCTAGAGTTGCCTCAACTGCCTCCCCCATTTTTGTTGCTGCCCCTGCTGAGAAAGGAAAGTTTATAATTGACTTTCTCATGGGTGGTGTCTCTGCCGCTGTATCCAAGACAGCCGCTGCCCCAATCGAGCGTGTGAAGCTCTTAATCCAAAACCAGGATGAGATGCTTAAAGTTGGACGTCTATCTGAACCATACAAGGGTATTGGTGATTGTTTCAAACGTACAATTTCAGAGGAGGGTTTTGGTTCATTGTGGAGAGGAAACACTGCCAATGTCATTCGTTATTTCCCTACCCAAGCATTGAACTTTGCTTTCAAGGATTACTTTAAGAGACTTTTCAACTTCAAGAAAGACAAGGATGGCTACTGGAAATGGTTTGCTGGTAACCTTGCATCAGGTGGTGCAGCTGGTGCTTCCTCCCTTCTTTTTGTTTACTCTCTCGACTATGCTCGTACCCGGTTGGCAAACGATGCCAAGGCTGCCAAGAAGGGTGGGGAGAGGCAATTCAATGGATTGGTCGATGTCTACAGGAAGACATTGAAATCTGATGGTATTGCTGGTCTTTACCGTGGATTTAACATTTCTTGTGTTGGTATCATCGTGTACCGTGGTTTATACTTCGGAATGTACGATTCTCTGAAGCCCGTTCTCTTGACCGGAGACCTGCAGGATAGCTTCTTTGCTAGCTTTGCCCTCGGTTGGCTAATCACCAATGGTGCCGGGCTTGCATCGTACCCAATCGATACTGTTCGTAGAAGAATGATGATGACATCTGGTGAGGCAGTCAAGTACAAGAGCTCAATGGACGCCTTTGCCCAGATCTTGAAGAATGAGGGCGCTAAGTCTCTCTTTAAGGGTGCCGGTGCCAACATTCTTCGTGCTGTTGCGGGTGCTGGTGTGCTTGCCGGTTACGACAAGTTGCAGGTGATCGTCTTTGGCAAGAAGTATGGATCCGGTGGTGCTTAA 1173 47.83 MADQVQHPTIYQKVAGQLSLQSRVALGFRASDDGFRNPALYQRRASMSNYSNAAFQYPAVQSCVATTDLSRVASTASPIFVAAPAEKGKFIIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKVGRLSEPYKGIGDCFKRTISEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGDLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSMDAFAQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVFGKKYGSGGA 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37766694 37768372 - Sed0018170.1 Sed09g1385 726149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1385 390 ProSiteProfiles Solute carrier (Solcar) repeat profile. 193 285 IPR018108 -
Sed09g1385 390 ProSiteProfiles Solute carrier (Solcar) repeat profile. 293 379 IPR018108 -
Sed09g1385 390 Pfam Mitochondrial carrier protein 89 185 IPR018108 -
Sed09g1385 390 Pfam Mitochondrial carrier protein 293 381 IPR018108 -
Sed09g1385 390 Pfam Mitochondrial carrier protein 193 287 IPR018108 -
Sed09g1385 390 PRINTS Mitochondrial carrier protein signature 106 120 IPR002067 GO:0055085(InterPro)
Sed09g1385 390 PRINTS Mitochondrial carrier protein signature 156 176 IPR002067 GO:0055085(InterPro)
Sed09g1385 390 PRINTS Mitochondrial carrier protein signature 258 276 IPR002067 GO:0055085(InterPro)
Sed09g1385 390 PRINTS Mitochondrial carrier protein signature 208 226 IPR002067 GO:0055085(InterPro)
Sed09g1385 390 PRINTS Mitochondrial carrier protein signature 302 324 IPR002067 GO:0055085(InterPro)
Sed09g1385 390 PRINTS Mitochondrial carrier protein signature 93 106 IPR002067 GO:0055085(InterPro)
Sed09g1385 390 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 86 387 IPR002113 GO:0005471(PANTHER)|GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Sed09g1385 390 FunFam ADP,ATP carrier protein, mitochondrial 91 386 - -
Sed09g1385 390 PRINTS Adenine nucleotide translocator signature 193 206 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Sed09g1385 390 PRINTS Adenine nucleotide translocator signature 134 155 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Sed09g1385 390 PRINTS Adenine nucleotide translocator signature 167 179 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Sed09g1385 390 PRINTS Adenine nucleotide translocator signature 90 102 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Sed09g1385 390 PRINTS Adenine nucleotide translocator signature 298 314 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Sed09g1385 390 ProSiteProfiles Solute carrier (Solcar) repeat profile. 88 181 IPR018108 -
Sed09g1385 390 Gene3D Mitochondrial carrier domain 91 386 IPR023395 -
Sed09g1385 390 SUPERFAMILY Mitochondrial carrier 89 375 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1942 Sed-Chr5:32787849 Sed09g1385 Sed-Chr9:37766694 3.30E-157 dispersed
Sed08g1770 Sed-Chr8:32541841 Sed09g1385 Sed-Chr9:37766694 8.20E-56 dispersed
Sed09g1385 Sed-Chr9:37766694 Sed09g1389 Sed-Chr9:37801341 9.40E-216 dispersed
Sed09g1385 Sed-Chr9:37766694 Sed09g1386 Sed-Chr9:37771965 5.20E-214 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1385 K05863 - csv:101203733 722.62