Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1388 ATGGCTGACCAGGTTCAGCATCCCACCATTTATCAGAAAGTTGCTGGGCAGCTCTCTCTTCAGTCTGCTTCAGGATTCCGTGCTAGCAATGATGGCTTTAGGAACCCAGCACTGTATCAGAGACGTGCAACAATCAACAATTACTCAAATGCTGCTTTCCAATATCCTGCTGTGCAATCATGTGTTGCTACAACTGATCTTTCTAGGGTTGCCTCAACCGCCTCCCCCATTTTTGTTGCAGCCCCTGCTGAGAAAGGGAAGTTTATAATTGACTTTTTCATGGGTGGTGTCTCTGCCGCTGTATCCAAGACAGCCGCTGCCCCAATCGAGCGTGTGAAGCTCTTAATCCAAAACCAGGATGAGATGCTTAAAGCTGGACGTCTGTCCGAACCATACAAGGGTATTGGTGATTGTTTCAAACGTACAATTTCAGAGGAGGGTTTTGGTTCATTGTGGAGAGGAAACACTGCCAATGTCATTCGTTATTTCCCCACTCAAGCATTGAACTTTGCTTTCAAGGATTACTTCAAGAGACTTTTCAACTTCAAGAAAGACAAGGATGGCTACTGGAAATGGTTTGCTGGTAACCTTGCATCAGGTGGTGCGGCTGGTGCTTCCTCCCTTCTCTTTGTTTACTCTCTCGACTATGCTCGTACTCGGTTGGCAAACGATGCCAAGGCTGCCAAGAAGGGTGGTGAAAGGCAATTCAATGGATTGGTCGATGTCTACAGGAAGACATTGAAGTCTGATGGTATTGCTGGTCTTTACCGTGGATTCAACATTTCTTGTGTTGGTATCATTGTGTACCGTGGTTTATACTTTGGAATGTACGATTCTCTGAAGCCCGTTCTCTTGACTGGAGACTTGCAGGATAGCTTCTTTGCTAGCTTTGCCCTCGGTTGGCTAATCACCAATGGTGCCGGGCTTGCATCGTACCCAATCGATACTGTTCGTAGAAGAATGATGATGACATCTGGTGAGGCAGTCAAGTACAAGAGCTCGATGGATGCCTTTGCTCAGATCTTGAAGAACGAAGGTGCCAAATCTCTCTTCAAGGGTGCTGGTGCTAACATTCTCCGTGCCGTTGCTGGTGCTGGTGTGCTTGCCGGGTACGACAAGCTGCAGGTGATTGTCTTCGGCAAGAAGTACGGATCTGGTGGTGGTTAA 1167 47.3 MADQVQHPTIYQKVAGQLSLQSASGFRASNDGFRNPALYQRRATINNYSNAAFQYPAVQSCVATTDLSRVASTASPIFVAAPAEKGKFIIDFFMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKAGRLSEPYKGIGDCFKRTISEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGDLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSMDAFAQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVFGKKYGSGGG 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37797277 37800074 - Sed0018185.1 Sed09g1388 726152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1388 388 ProSiteProfiles Solute carrier (Solcar) repeat profile. 86 179 IPR018108 -
Sed09g1388 388 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 84 385 IPR002113 GO:0005471(PANTHER)|GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Sed09g1388 388 FunFam ADP,ATP carrier protein, mitochondrial 89 384 - -
Sed09g1388 388 Pfam Mitochondrial carrier protein 191 285 IPR018108 -
Sed09g1388 388 Pfam Mitochondrial carrier protein 87 183 IPR018108 -
Sed09g1388 388 Pfam Mitochondrial carrier protein 291 379 IPR018108 -
Sed09g1388 388 SUPERFAMILY Mitochondrial carrier 87 373 IPR023395 -
Sed09g1388 388 ProSiteProfiles Solute carrier (Solcar) repeat profile. 191 283 IPR018108 -
Sed09g1388 388 PRINTS Adenine nucleotide translocator signature 132 153 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Sed09g1388 388 PRINTS Adenine nucleotide translocator signature 165 177 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Sed09g1388 388 PRINTS Adenine nucleotide translocator signature 88 100 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Sed09g1388 388 PRINTS Adenine nucleotide translocator signature 191 204 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Sed09g1388 388 PRINTS Adenine nucleotide translocator signature 296 312 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Sed09g1388 388 ProSiteProfiles Solute carrier (Solcar) repeat profile. 291 377 IPR018108 -
Sed09g1388 388 Gene3D Mitochondrial carrier domain 89 384 IPR023395 -
Sed09g1388 388 PRINTS Mitochondrial carrier protein signature 91 104 IPR002067 GO:0055085(InterPro)
Sed09g1388 388 PRINTS Mitochondrial carrier protein signature 206 224 IPR002067 GO:0055085(InterPro)
Sed09g1388 388 PRINTS Mitochondrial carrier protein signature 104 118 IPR002067 GO:0055085(InterPro)
Sed09g1388 388 PRINTS Mitochondrial carrier protein signature 154 174 IPR002067 GO:0055085(InterPro)
Sed09g1388 388 PRINTS Mitochondrial carrier protein signature 256 274 IPR002067 GO:0055085(InterPro)
Sed09g1388 388 PRINTS Mitochondrial carrier protein signature 300 322 IPR002067 GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1386 Sed-Chr9:37771965 Sed09g1388 Sed-Chr9:37797277 2.60E-218 dispersed
Sed09g1388 Sed-Chr9:37797277 Sed11g0882 Sed-Chr11:21297026 5.90E-53 dispersed
Sed09g1388 Sed-Chr9:37797277 Sed09g1389 Sed-Chr9:37801341 3.60E-215 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1388 K05863 - csv:101203733 713.375