Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g1390 | ATGACAGACCCTAAAAACTACTCCAATTATTCCTTCACCTTCATCCCTCTTCCGCCGTCACCGCCGCCGTGTTCGCCGCCGCAGGCCCTCCCTCTCCTCAACACCCTCTCGCCGGAAACCACCGATCGCCGCCCCTCCTCCGGCGGCCTAGACAACAATGACGAAACTACCCTCGCCCTTGATTTTAGCCTCTCTTGCCCTAGCTCCGATCTCCACTCCCCCTCGCCGGACCCTGCCGGAAAACCCCTCGACGGCCAATTCTCCGGCGACCCTTTGCCGGCCGCCGGCAAGGGCCAGTTCTGGATTCCGACCCCTTCTCAGATCCTTACCGGTCCCACTCAATTCTCTTGCCCTCTCTGCTCTAAAGCATTTAATCGATACAATAATCTTCAGATGCATATGTGGGGGCATGGTTCTCAATATAGAAAAGGACCAGAGTCCCTAAAAGGAACACAGCCAACCGCCATGCTCCGGTTGCCATGCTACTGCTGCGCCCCGGGCTGCAAACACAACATCGACAACCCGAGGTCACGACCGCTCAAGGACTTTCGCACCTTGCAGACGCATTACAAGCGAAAGCATGGCGTCAAGCCCTTTACTTGTAGAAAATGCAGCAAAGCCTTCGCCGTAAAGGGTGATTGGCGAACGCACGAGAAGAATTGTGGGAAGATTTGGTATTGTTTTTGTGGCTCTGACTTCAAACACAAGCGCTCGCTCAAGGACCACATCAAGGCCTTCGGTAGGGGTCATGGTGCCCTAGGTCTTGACTACTTTGAGGACGACAATGAACCCGCATCTGAAGTTGAACACGAAGGCATTTTCATCCAATGA | 831 | 54.51 | MTDPKNYSNYSFTFIPLPPSPPPCSPPQALPLLNTLSPETTDRRPSSGGLDNNDETTLALDFSLSCPSSDLHSPSPDPAGKPLDGQFSGDPLPAAGKGQFWIPTPSQILTGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAPGCKHNIDNPRSRPLKDFRTLQTHYKRKHGVKPFTCRKCSKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFEDDNEPASEVEHEGIFIQ | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 37826744 | 37830328 | + | Sed0014478.1 | Sed09g1390 | 726154 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g1390 | 276 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 198 | 222 | - | - | |
Sed09g1390 | 276 | SUPERFAMILY | beta-beta-alpha zinc fingers | 182 | 219 | IPR036236 | - | |
Sed09g1390 | 276 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 115 | 142 | IPR013087 | - | |
Sed09g1390 | 276 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 117 | 137 | IPR013087 | - | |
Sed09g1390 | 276 | MobiDBLite | consensus disorder prediction | 67 | 96 | - | - | |
Sed09g1390 | 276 | Gene3D | Classic Zinc Finger | 114 | 137 | - | - | |
Sed09g1390 | 276 | SMART | c2h2final6 | 115 | 137 | IPR013087 | - | |
Sed09g1390 | 276 | SMART | c2h2final6 | 199 | 219 | IPR013087 | - | |
Sed09g1390 | 276 | SUPERFAMILY | beta-beta-alpha zinc fingers | 106 | 137 | IPR036236 | - | |
Sed09g1390 | 276 | PANTHER | ZINC FINGER PROTEIN WIP2 | 96 | 270 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER) | |
Sed09g1390 | 276 | FunFam | Zinc finger 45-like | 110 | 138 | - | - | |
Sed09g1390 | 276 | MobiDBLite | consensus disorder prediction | 18 | 55 | - | - | |
Sed09g1390 | 276 | Gene3D | Classic Zinc Finger | 177 | 250 | - | - | |
Sed09g1390 | 276 | FunFam | Zinc finger protein WIP2 | 168 | 250 | - | - | |
Sed09g1390 | 276 | MobiDBLite | consensus disorder prediction | 30 | 55 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed09g1390 | Sed-Chr9:37826744 | Sed14g0195 | Sed-Chr14:2209686 | 3.00E-91 | dispersed | |
Sed07g0666 | Sed-Chr7:4992851 | Sed09g1390 | Sed-Chr9:37826744 | 1.40E-136 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39607 | PF00096 | zf-C2H2 | 0.0014 | CL0361 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g1390 | - | - | - | 0.0 |