Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1390 ATGACAGACCCTAAAAACTACTCCAATTATTCCTTCACCTTCATCCCTCTTCCGCCGTCACCGCCGCCGTGTTCGCCGCCGCAGGCCCTCCCTCTCCTCAACACCCTCTCGCCGGAAACCACCGATCGCCGCCCCTCCTCCGGCGGCCTAGACAACAATGACGAAACTACCCTCGCCCTTGATTTTAGCCTCTCTTGCCCTAGCTCCGATCTCCACTCCCCCTCGCCGGACCCTGCCGGAAAACCCCTCGACGGCCAATTCTCCGGCGACCCTTTGCCGGCCGCCGGCAAGGGCCAGTTCTGGATTCCGACCCCTTCTCAGATCCTTACCGGTCCCACTCAATTCTCTTGCCCTCTCTGCTCTAAAGCATTTAATCGATACAATAATCTTCAGATGCATATGTGGGGGCATGGTTCTCAATATAGAAAAGGACCAGAGTCCCTAAAAGGAACACAGCCAACCGCCATGCTCCGGTTGCCATGCTACTGCTGCGCCCCGGGCTGCAAACACAACATCGACAACCCGAGGTCACGACCGCTCAAGGACTTTCGCACCTTGCAGACGCATTACAAGCGAAAGCATGGCGTCAAGCCCTTTACTTGTAGAAAATGCAGCAAAGCCTTCGCCGTAAAGGGTGATTGGCGAACGCACGAGAAGAATTGTGGGAAGATTTGGTATTGTTTTTGTGGCTCTGACTTCAAACACAAGCGCTCGCTCAAGGACCACATCAAGGCCTTCGGTAGGGGTCATGGTGCCCTAGGTCTTGACTACTTTGAGGACGACAATGAACCCGCATCTGAAGTTGAACACGAAGGCATTTTCATCCAATGA 831 54.51 MTDPKNYSNYSFTFIPLPPSPPPCSPPQALPLLNTLSPETTDRRPSSGGLDNNDETTLALDFSLSCPSSDLHSPSPDPAGKPLDGQFSGDPLPAAGKGQFWIPTPSQILTGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAPGCKHNIDNPRSRPLKDFRTLQTHYKRKHGVKPFTCRKCSKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFEDDNEPASEVEHEGIFIQ 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37826744 37830328 + Sed0014478.1 Sed09g1390 726154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1390 276 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 198 222 - -
Sed09g1390 276 SUPERFAMILY beta-beta-alpha zinc fingers 182 219 IPR036236 -
Sed09g1390 276 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Sed09g1390 276 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Sed09g1390 276 MobiDBLite consensus disorder prediction 67 96 - -
Sed09g1390 276 Gene3D Classic Zinc Finger 114 137 - -
Sed09g1390 276 SMART c2h2final6 115 137 IPR013087 -
Sed09g1390 276 SMART c2h2final6 199 219 IPR013087 -
Sed09g1390 276 SUPERFAMILY beta-beta-alpha zinc fingers 106 137 IPR036236 -
Sed09g1390 276 PANTHER ZINC FINGER PROTEIN WIP2 96 270 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Sed09g1390 276 FunFam Zinc finger 45-like 110 138 - -
Sed09g1390 276 MobiDBLite consensus disorder prediction 18 55 - -
Sed09g1390 276 Gene3D Classic Zinc Finger 177 250 - -
Sed09g1390 276 FunFam Zinc finger protein WIP2 168 250 - -
Sed09g1390 276 MobiDBLite consensus disorder prediction 30 55 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1390 Sed-Chr9:37826744 Sed14g0195 Sed-Chr14:2209686 3.00E-91 dispersed
Sed07g0666 Sed-Chr7:4992851 Sed09g1390 Sed-Chr9:37826744 1.40E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39607 PF00096 zf-C2H2 0.0014 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1390 - - - 0.0