Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1410 ATGGCGAAGATCTCAAATCCACTGCACAGGAATTCCATTTCCGCCACCTCTGATCCGCCTCACTCTTCTCCAGTTCATCAGAGGAAGCCTCTCAAGCGCACGCGCAAGTCCGTTCCTCGCGATTCTCCCGCTCGGCGCAGCTCTGTGTTTCGCGGCGTTACGAGGCATAGATGGACTGGACGATATGAGGCGCATTTGTGGGATAAGAATTGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGTTTATTTAGGAGCTTATGATGAAGAAGAAGCAGCAGCTCATGCTTACGATCTTGCCGCGCTTAAGTACTGGGGAACTGAAACTGTTCTTAACTTTCCAATTTTAACTTACCAAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTACATTGGATTTTTGAGACGGAAGAGTAGCGGCTTTTCACGCGGGGTTTCGAAGTATAGAGGTGTAGCCAGGCACCATCACAATGGAAGATGGGAAGCTCGAATAGGCAGAGTGTTTGGCAACAAATACCTTTACCTTGGAACTTATGCTACCCAAGAAGAGGCTGCCACAGCTTACGACATGGCGGCCATAGAATACCGTGGCCTTAACGCCGTTACGAACTTCGACCTCAGCCGTTACATCAAACACCTCCGGCCAGAGGAACATAACGACCGTCCACCCAGCCCTACCGTTCCGTCGCAATGTTCGAGCTCCGGCCAACCCACCACCGCGCCACTCCCGGAACCTGGCGGCGACGGCGACTCCTCGCCGTCGTCGTCGGCGGCGCTGGAGCTGCTACTCCATTCGTCAGAATTGAAAGACATACTAAAAAGGACATCCGCCGCCGTGGACCCACAAACGCCGCCGGAATCCGACCGGCCGCGCCGGTGTATTCCCGACGACATTCAAACGTTCTTCGATTGTACTTCTAAAGATTCCGGCGACATTGCCGGAAGCGACGACGACATATTTGGGTACCTAAATTCGTTTTTTCCTTCGTCAGTTTTTCTCGATGCTTAA 1020 51.57 MAKISNPLHRNSISATSDPPHSSPVHQRKPLKRTRKSVPRDSPARRSSVFRGVTRHRWTGRYEAHLWDKNCWNEGQNKKGRQVYLGAYDEEEAAAHAYDLAALKYWGTETVLNFPILTYQDELKEMEGQSREEYIGFLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKHLRPEEHNDRPPSPTVPSQCSSSGQPTTAPLPEPGGDGDSSPSSSAALELLLHSSELKDILKRTSAAVDPQTPPESDRPRRCIPDDIQTFFDCTSKDSGDIAGSDDDIFGYLNSFFPSSVFLDA 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37972345 37980280 - Sed0003871.1 Sed09g1410 726174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1410 339 ProSiteProfiles AP2/ERF domain profile. 49 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1410 339 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 36 229 - -
Sed09g1410 339 MobiDBLite consensus disorder prediction 7 23 - -
Sed09g1410 339 SUPERFAMILY DNA-binding domain 150 211 IPR016177 GO:0003677(InterPro)
Sed09g1410 339 CDD AP2 150 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1410 339 Gene3D AP2/ERF domain 49 117 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1410 339 Gene3D AP2/ERF domain 150 211 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1410 339 SMART rav1_2 49 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1410 339 SMART rav1_2 151 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1410 339 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1410 339 PRINTS Ethylene responsive element binding protein signature 191 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1410 339 FunFam AP2-like ethylene-responsive transcription factor 150 211 - -
Sed09g1410 339 FunFam AP2-like ethylene-responsive transcription factor 48 117 - -
Sed09g1410 339 Pfam AP2 domain 150 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1410 339 Pfam AP2 domain 48 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1410 339 ProSiteProfiles AP2/ERF domain profile. 151 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1410 339 MobiDBLite consensus disorder prediction 227 244 - -
Sed09g1410 339 MobiDBLite consensus disorder prediction 218 259 - -
Sed09g1410 339 SUPERFAMILY DNA-binding domain 48 116 IPR016177 GO:0003677(InterPro)
Sed09g1410 339 MobiDBLite consensus disorder prediction 1 50 - -
Sed09g1410 339 MobiDBLite consensus disorder prediction 279 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0558 Sed-Chr8:3755793 Sed09g1410 Sed-Chr9:37972345 8.20E-113 dispersed
Sed08g1351 Sed-Chr8:28090916 Sed09g1410 Sed-Chr9:37972345 1.50E-72 dispersed
Sed09g1410 Sed-Chr9:37972345 Sed10g1151 Sed-Chr10:16090429 8.00E-70 dispersed
Sed09g1410 Sed-Chr9:37972345 Sed06g1959 Sed-Chr6:43759643 1.20E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39610 PF00847 AP2 1.20E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1410 K09285 - csv:101206499 505.368