Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g1410 | ATGGCGAAGATCTCAAATCCACTGCACAGGAATTCCATTTCCGCCACCTCTGATCCGCCTCACTCTTCTCCAGTTCATCAGAGGAAGCCTCTCAAGCGCACGCGCAAGTCCGTTCCTCGCGATTCTCCCGCTCGGCGCAGCTCTGTGTTTCGCGGCGTTACGAGGCATAGATGGACTGGACGATATGAGGCGCATTTGTGGGATAAGAATTGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGTTTATTTAGGAGCTTATGATGAAGAAGAAGCAGCAGCTCATGCTTACGATCTTGCCGCGCTTAAGTACTGGGGAACTGAAACTGTTCTTAACTTTCCAATTTTAACTTACCAAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTACATTGGATTTTTGAGACGGAAGAGTAGCGGCTTTTCACGCGGGGTTTCGAAGTATAGAGGTGTAGCCAGGCACCATCACAATGGAAGATGGGAAGCTCGAATAGGCAGAGTGTTTGGCAACAAATACCTTTACCTTGGAACTTATGCTACCCAAGAAGAGGCTGCCACAGCTTACGACATGGCGGCCATAGAATACCGTGGCCTTAACGCCGTTACGAACTTCGACCTCAGCCGTTACATCAAACACCTCCGGCCAGAGGAACATAACGACCGTCCACCCAGCCCTACCGTTCCGTCGCAATGTTCGAGCTCCGGCCAACCCACCACCGCGCCACTCCCGGAACCTGGCGGCGACGGCGACTCCTCGCCGTCGTCGTCGGCGGCGCTGGAGCTGCTACTCCATTCGTCAGAATTGAAAGACATACTAAAAAGGACATCCGCCGCCGTGGACCCACAAACGCCGCCGGAATCCGACCGGCCGCGCCGGTGTATTCCCGACGACATTCAAACGTTCTTCGATTGTACTTCTAAAGATTCCGGCGACATTGCCGGAAGCGACGACGACATATTTGGGTACCTAAATTCGTTTTTTCCTTCGTCAGTTTTTCTCGATGCTTAA | 1020 | 51.57 | MAKISNPLHRNSISATSDPPHSSPVHQRKPLKRTRKSVPRDSPARRSSVFRGVTRHRWTGRYEAHLWDKNCWNEGQNKKGRQVYLGAYDEEEAAAHAYDLAALKYWGTETVLNFPILTYQDELKEMEGQSREEYIGFLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKHLRPEEHNDRPPSPTVPSQCSSSGQPTTAPLPEPGGDGDSSPSSSAALELLLHSSELKDILKRTSAAVDPQTPPESDRPRRCIPDDIQTFFDCTSKDSGDIAGSDDDIFGYLNSFFPSSVFLDA | 339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 37972345 | 37980280 | - | Sed0003871.1 | Sed09g1410 | 726174 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g1410 | 339 | ProSiteProfiles | AP2/ERF domain profile. | 49 | 115 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g1410 | 339 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 36 | 229 | - | - | |
Sed09g1410 | 339 | MobiDBLite | consensus disorder prediction | 7 | 23 | - | - | |
Sed09g1410 | 339 | SUPERFAMILY | DNA-binding domain | 150 | 211 | IPR016177 | GO:0003677(InterPro) | |
Sed09g1410 | 339 | CDD | AP2 | 150 | 211 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g1410 | 339 | Gene3D | AP2/ERF domain | 49 | 117 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g1410 | 339 | Gene3D | AP2/ERF domain | 150 | 211 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g1410 | 339 | SMART | rav1_2 | 49 | 121 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g1410 | 339 | SMART | rav1_2 | 151 | 215 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g1410 | 339 | PRINTS | Ethylene responsive element binding protein signature | 50 | 61 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g1410 | 339 | PRINTS | Ethylene responsive element binding protein signature | 191 | 211 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g1410 | 339 | FunFam | AP2-like ethylene-responsive transcription factor | 150 | 211 | - | - | |
Sed09g1410 | 339 | FunFam | AP2-like ethylene-responsive transcription factor | 48 | 117 | - | - | |
Sed09g1410 | 339 | Pfam | AP2 domain | 150 | 201 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g1410 | 339 | Pfam | AP2 domain | 48 | 107 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g1410 | 339 | ProSiteProfiles | AP2/ERF domain profile. | 151 | 209 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g1410 | 339 | MobiDBLite | consensus disorder prediction | 227 | 244 | - | - | |
Sed09g1410 | 339 | MobiDBLite | consensus disorder prediction | 218 | 259 | - | - | |
Sed09g1410 | 339 | SUPERFAMILY | DNA-binding domain | 48 | 116 | IPR016177 | GO:0003677(InterPro) | |
Sed09g1410 | 339 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
Sed09g1410 | 339 | MobiDBLite | consensus disorder prediction | 279 | 298 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0558 | Sed-Chr8:3755793 | Sed09g1410 | Sed-Chr9:37972345 | 8.20E-113 | dispersed | |
Sed08g1351 | Sed-Chr8:28090916 | Sed09g1410 | Sed-Chr9:37972345 | 1.50E-72 | dispersed | |
Sed09g1410 | Sed-Chr9:37972345 | Sed10g1151 | Sed-Chr10:16090429 | 8.00E-70 | dispersed | |
Sed09g1410 | Sed-Chr9:37972345 | Sed06g1959 | Sed-Chr6:43759643 | 1.20E-78 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39610 | PF00847 | AP2 | 1.20E-13 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g1410 | K09285 | - | csv:101206499 | 505.368 |