Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1419 ATGGCAGTTGAAACAAACCAAACACAGGAGTTCATTTTCCGCTCAAAACTCCCCGCTATCCACATTCCCAAACACCTCCCTCTCCACGAATACATTTTCCAAAACCAGCAAAAATTCGGGTCACGCCCCTGTCTGATCAATGGCGCCACCAACGACGTTTACTCCTACAATGAGGTTCAGTTAACGGCCCGTCGAGTCGCCGCGGGGCTTAACAACCTCGGCATCAAGAAAGGCGACGTCGTCATGAATCTACTCCCCAATTCTCCGGAGTTCGTCTTCACGTTCCTCGGCGCCTCGTACCGTGGCGCGGTCATGACCGCCGCGAACCCGTTCTACACCTCTGTCGAAATCGCCAAACACGCCAAAGCTGCCAACGCCAAGTTGATTGTCACCATGGCTTGTTTTTACGATCGGGTTAAGGATTTGGCGGAAAATGGAGTTAAGATCGTGTGTGTTGATTTTGGCGTGGAGGGTTGTTTGCATTTTTCTGTTTTGAGTGGCGCGGACGAGTCCCACGCGCCTTCGGTGGCGGATTTTGCCGCGGACGATGTCGTGGCGCTCCCCTATTCCTCGGGCACCACGGGTTTGCCGAAGGGCGTTATGTTGACCCACAAAGGGCTGATCACGAGCGTTGCTCAGCAAATCGACGGCGAAAACCCGAACCTTTATTACCACGGCGAGGACGTTATTCTTTGCGTGTTGCCGTTTTTTCACATTTATTCGTTGAATTCGATTTTGTTGTGTGGGCTACGCGCTGGTGCTGCGATTTTGATCATGCAAAAGTTTGATATCGTTTCACTTTTGCAATTGGTTGAGAAATATAAAGTTTCTGTCATGCCAATTGTGCCGCCAATTTTCTTGTCCATTGCAAAGTCACCAGAGTTTGAGAAATACGACGTGTCGTCCGTGAGGGTTTTGAAATCCGGCGGAGCGCCGCTGGGGAAGGAGTTGGAAGACGCCGTGAGGGAGAAGTTTCCGACGGCGGTTCTCGGACAAGGGTACGGAATGACCGAGGCCGGTCCGGTTCTGACCATGAGTTTGTCTTTCGCCAAAGAACCGTTTCGAGTCAAAGCCGGAGCCTGTGGAACCGTGGTTCGAAACGCAGAGATGAAGATTGTGGACCCGGAAACCGGCGCCTCACTGCCGGCGAATTCCGCCGGCGAGATTTGTATCAGAGGGGATCAAATTATGAAAGGGTATTTGAATGATTTGGAAGCTACTAAAAGAACGGTTGATAAGGAAGGATGGCTTCACACCGGTGACATCGGCTTCGTCGACAACGACGACGAGCTCTTCATCGTGGACCGGCTTAAAGAGCTTATCAAATTCAAGGCCTTTCAAGTGGCGCCGGCCGAGCTCGAGTCTCTTCTAATCTCTCACCCTAAACTATCTGATGCTGCTGTGATTGGTATGCCAGACGAGCAAGCCGGAGAAATACCGGTGGCATTTGTAGTAAAGACGAACGACGATACAATCACAGAAGAAGATGTGAAGCAATTTATATCAAAACAAGTGGTGTTTTACAAGCGATTAAAACGAGTGTTTTTCGTCAACTCTATTCCAAAGGCTCCTTCCGGCAAAATCCTCAGAAAAGAACTTAGAGCCAAACTAGCTTCTGGCGATTACAAATAA 1632 50.06 MAVETNQTQEFIFRSKLPAIHIPKHLPLHEYIFQNQQKFGSRPCLINGATNDVYSYNEVQLTARRVAAGLNNLGIKKGDVVMNLLPNSPEFVFTFLGASYRGAVMTAANPFYTSVEIAKHAKAANAKLIVTMACFYDRVKDLAENGVKIVCVDFGVEGCLHFSVLSGADESHAPSVADFAADDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQIDGENPNLYYHGEDVILCVLPFFHIYSLNSILLCGLRAGAAILIMQKFDIVSLLQLVEKYKVSVMPIVPPIFLSIAKSPEFEKYDVSSVRVLKSGGAPLGKELEDAVREKFPTAVLGQGYGMTEAGPVLTMSLSFAKEPFRVKAGACGTVVRNAEMKIVDPETGASLPANSAGEICIRGDQIMKGYLNDLEATKRTVDKEGWLHTGDIGFVDNDDELFIVDRLKELIKFKAFQVAPAELESLLISHPKLSDAAVIGMPDEQAGEIPVAFVVKTNDDTITEEDVKQFISKQVVFYKRLKRVFFVNSIPKAPSGKILRKELRAKLASGDYK 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38064399 38066356 + Sed0004188.1 Sed09g1419 726183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1419 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 534 - GO:0016405(PANTHER)
Sed09g1419 543 SUPERFAMILY Acetyl-CoA synthetase-like 19 539 - -
Sed09g1419 543 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
Sed09g1419 543 CDD 4CL 22 533 - -
Sed09g1419 543 Gene3D - 438 539 IPR045851 -
Sed09g1419 543 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Sed09g1419 543 FunFam 4-coumarate--CoA ligase 2 439 540 - -
Sed09g1419 543 Pfam AMP-binding enzyme 34 401 IPR000873 -
Sed09g1419 543 Gene3D - 5 437 IPR042099 -
Sed09g1419 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3704 Sed-Chr5:45056475 Sed09g1419 Sed-Chr9:38064399 8.90E-175 dispersed
Sed07g0709 Sed-Chr7:5280572 Sed09g1419 Sed-Chr9:38064399 3.20E-278 dispersed
Sed08g0480 Sed-Chr8:3055295 Sed09g1419 Sed-Chr9:38064399 6.40E-153 dispersed
Sed09g1419 Sed-Chr9:38064399 Sed12g2223 Sed-Chr12:32627305 9.70E-195 dispersed
Sed07g0708 Sed-Chr7:5273414 Sed09g1419 Sed-Chr9:38064399 8.00E-258 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1419 K01904 - csv:101218121 959.518