Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed09g1420 | ATGGGGACTCCAGTGAATATCATTGTCGGATCACATGTTTGGGTTGAGGAACCTGATGAAGCTTGGATTGATGGCCAAGTTACAGAAATTAAAGGAGAAAATGCCTCCATAATCACCACCAATGAAAAAAATGTTGTTGCAAAAATTTCGAGCATATATCCGAAAGACACGGAGGCGCCGCCGGCTGGAGTGGACGACATGACGAAACTGGCGTACCTCCATGAACCTGGAGTTCTGCATAATCTGGCTTGTCGGTTTTCTCTCAACGAGATTTACACTTACACCGGAAATATTCTAATTGCGGTGAATCCTTTCCGGCGACTGCCGCATTTGTATGATATTCATATGATGGAGCAGTATAAGGGAGCTACTTTCGGCGAGCTTAGTCCGCATCTTTTTGCCGTTGCAGATACTTGCTACAGATCAATGATTAACGACCAAGGAAGTCAGTCCATTTTAGTGAGTGGAGAAAGTGGTGCTGGTAAAACTGAAACAACAAAGATGCTCATGAGATATCTTGCATTCATGGGAGGCAGATCTGATACCGAAGGAAGATCAGTCGAGCAACAGGTTTTGGAGTCCAACCCTGTATTGGAAGCATTTGGAAATGCCAAAACCGTCAAAAACAACAATTCAAGTCGTTTTGGTAAATTTGTAGAAATACAATTTGATAAGAATTGGAAGATCTCTGGGGCTGCCATTCGTACATACCTTCTTGAACGATCGCGTGTTTGCCAAGTCTCAGATCCTGAGAGAAACTACCATTGTTTTTACATGCTCTGTGCTGCTCCACCAGAAGAGGTCAAGAAATACAAGTTAGGAGACCCGAGGACATTTCATTATCTTAATCAAACAAACTGTTACGAAGTGGCAAATGTTGATGATTCAAGAGAGTACTTAGAGACAAGAAATGCCATGGATGTTGTTGGAATCAGCCAGGATGAACAGGAAGCTATATTTCGTATTGTAGCTGCAATACTGCATCTTGGAAACATTAATTTCATCAAAGGGAAGGAAATTGACTCTTCCCAAGTGAAAGACGAGAAATCAAATTATCATCTTCAAACTGCAGCAGAGCTACTCATGTGCGATGCAAAGGCGCTGGAACTTTCGCTTTGCCAGCGTGTCATAGTGACTCCTGATGGTAAAATTACAAAGCCATTGGATCCAGATTCAGCAGCCTTGAGTCGTGACGCAATGGCAAAAACGGTGTATTCTAGGTTGTTTGATTGGATTGTGGACAAAATTAATAGTTCAATTGGCCAAGATCCTAATGCAGCGAGCTTAATCGGTGTCCTTGATATTTATGGATTTGAAAGCTTCAAGGTCAATAGTTTTGAGCAGCTTTGCATCAACCTCACCAATGAGAAGTTGCAGCAACACTTTAATCAGCATGTTTTCAAGATGGAGCAAGAGGAGTATACCAAAGAAGAAATTAATTGGAGCTATGTTGAGTTTGTAGATAATCAGGATGTCCTTGATCTTATTGAGAGGAAACCTGGAGGAATAATTGCTCTGCTTGATGAAGCCTGTATGTTTCCAAAGTCAACGCATGAAACATTTGCTCAAAAGATGTATCAGACATACAAAGCACATAAGCGTTTCAGCAAGCCAAAACTTGCTCGAACAGCTTTCACAATTAACCATTATGCTGGAGATGTTACATACCAAGCAGATCATTTTCTAGATAAAAACAAGGACTATGTAGTGGCAGAACATCAGGCTCTTCTGGATGCCTCAAAATGCTCTTTTGTTGCTAATCTTTTCCCTACACTTCCCGAGGAGACCTCGAAGCAATCCAAGTTTTCTTCTATTGGTACTCGGTTCAAGCAACAACTACAAGCTCTCATGGAAACATTGAATACTACAGAACCGCATTATATTAGATGTGTAAAGCCCAACACAGTCTTGAAGCCTGGAATCTTTGAGAACTTCAATGTGTTGGGCCAATTGAGGTGTGGGGGAGTGCTCGAAGCAATTAGAATAAGCTGTGCAGGATATCCAACAAAAAGAACATTTGATGAGTTCCTCGATCGATTTGGAATGCTTGCTCCAGATATTTCAGATGGGTCTGATGAAAAATCAGCATGTATTGCAATATGTGACAGAATGGGCTTAAAGGGTTATCAGATTGGAAAAACAAAAGTGTTTCTCAGAGCTGGACAAATGGCAGAGTTGGATGCACGCCGAACTGAAATATTGGCCAATGCTGTTAGACGCATCCAGCGACTAATCCGAACCCATCTAACTAGAAAAGAGTTTATTGCCTTGAGAAAGGCAACAATTCATATGCAGAAACTTTGGAGAGCACAACTTGCACGTAAGCTGTATGAGGAAATGAGGAGAGAAGCAGCTTCAATCCGTATACAGAAGCATGCACGTGCTCACGCAGATAGAAAATCTTACAAAAAATTACTTGCATCAGCTATAGTTATTCAAACTGGTATGCGTGCAATGGCAGCTAGAAACGAGTACAGACACAGAAGAAGAACAAAAGCTTCTATCATTGTTCAGACTGAATGGCGAAGGGCATCAGCTATTTCAGCTTACAAAAAACAACAGAAGGCAACTCTTGCTCTTCAATGCCTCTGGCGAGCTAAAGTTGCAAGAAAAGAGCTCAAAAAGCTAAAGATGGCTGCAAGAGAAACAGGGGCACTAAAGGAGGCAAAGGACAAATTGGAGAAGCGTGTCGAGGAGCTAACTTGGCGCCTAGATTTTGAGAAGCACTTGAGGATGGATGTTGAAGAAGCCAAGGGGCAAGAGGTTGCAAAGTTACAAAATGCTTTGGACGAACTGCAAGGACAGCTGGATGAAGCCAATGCTGCAACCATACGTGAGAGAGAAGCAGCAAAATTGGCCATTGAACAAGCTCCACCAGTCATTAAGGAAGTTCCTGTGGTGGACGAGACCAAACTGGAAATGCTGAGAAATCACAATGAAGAACTTGAGGGGGAGGTTGGAGAGCTGAAGAAGAAAATGGAGGAATTCGAAGCGAAGTTTGCTGAAGTAGAGAATGAAAGTAAAGCTAGACTCAAGGAGGCAGAAGAGGCACAATTGAAATCAATGCAACTTCAAGAGACTATTGAGAGATTGGAATCAAATTTATCAAACCTTGAGTCCGAGAACCAGGTTCTGCGCCAGCAGGCTTTGGTTGCAGCAGAAAATGTGTCCCTCTCTGAAGAACTGCAAACCCTCAAGAGTAAGATTGGAAGTTTAGAGACAGAGAATGAAGTTCTTCGCAGTCGGCCAGTAGCTGTTGAACATATTACTGTTCCTGCAGGGGTGCTTGCAGAAAGCAAGGCTTTAGATAACGGACATATACTGGAAAAAGAGATTGTTAAACCTACTAAGGAACCACCTGTTGTTCCCGTCCTAACTAAACAAGGCTCACTCACTGAAAAGCAACAGGAAAATCATGATGTCCTGCTCAAGTGCTTAGCAGAAGACAAGCGTTTTGACAAAGGCAGACCAGTTGCAGCTTGTATTGTCTACAAGACACTTCTTCAATGGAGATCTTTTGAATCAGAGAAGACGAATATATTTGACAGAATTACTTACACAATCAGATCTGCTATAGAGAGTCAAGAAAATATCAGTGATCTTTCATATTGGCTTTCAACCACTTCTACCCTTCTTTATCTCCTTCAAAGTTCACTCAAGGCAACCAATGCAAGTACTACAGCTTCACATCGCTACCGAGCTTCCCCTTCAACCTTATTTGGTCGTATGGCATCTGGTCTTCGATCATCTTCAATGAGTATGGGAATTTCCAGTGGATACAGTGGAATGGTGGGAAAGACAAACAATCAATCTAAAGTTGAACCCAAGTACCCAGCATTGCTCTTTAAGCAACATCTTGCAGCTTGCATTGAAAAATTGTTTGGGATGATTCGTGATAATTTAAAGAAAGAAATTAGCCCTTTCTTGCATCTATGCATACAGGCACCAAGATCAGTGAGAGCCAGATCAATGAAGGGGTCATCTAAAAATATCCATTCAAACATTGTTGCCAAACAGCAAGCATCAAGTATTCATTGGCAAAGCATTGTTAATAAGCTAGACCAGACCTTGGATATAATGTCTGAAAACCATGTTCCCTCCATGATCATGAGAAAAATCTTCCTCCAGGTTTTCTCATTCATAAATGTCCAGCTCTTCAATAGCTTATTACTACGACGCGAGTGCTGTTCCTTCAGTAATGGAGAGTACTTAAAGTTAGGTCTGCAGGAGTTGGAGCAATGGTGTACCAAAGCTACTGATACGAATGCTGGCTCTTCCTGGGATGAACTTCAACACATAAGACAAGCAGTAGGATTTCTGGTGTTACATCAGAAGTCCCAGAAAAGTTTGAATGAGATCACAGATGAATTATGCCCGATTCTGGGCATCCCGCAAATATATCGCATAGGAACGATGTTTTGGGACGACAAATATGGAACTCAGGGATTATCTCCCGATATAATTAGTCAAATGAGAGTCCTATTGGCAGAAGACTCTATCAACATCCCAAACAACTCTTTCCTACTTGATGTGGATTCAAGCATACCGTTTTCAATAGAAGAAATATTCCGTTCCTTTGGCGAGGTTAACCTATCCGATGTCGACCCGCCACCACTTATACGACAAAGATCAGATTTCCATTTTCTTCTGCAGCAGCTGAATGAATGA | 4668 | 41.82 | MGTPVNIIVGSHVWVEEPDEAWIDGQVTEIKGENASIITTNEKNVVAKISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLACRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGATFGELSPHLFAVADTCYRSMINDQGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSDTEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNWKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEEVKKYKLGDPRTFHYLNQTNCYEVANVDDSREYLETRNAMDVVGISQDEQEAIFRIVAAILHLGNINFIKGKEIDSSQVKDEKSNYHLQTAAELLMCDAKALELSLCQRVIVTPDGKITKPLDPDSAALSRDAMAKTVYSRLFDWIVDKINSSIGQDPNAASLIGVLDIYGFESFKVNSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIERKPGGIIALLDEACMFPKSTHETFAQKMYQTYKAHKRFSKPKLARTAFTINHYAGDVTYQADHFLDKNKDYVVAEHQALLDASKCSFVANLFPTLPEETSKQSKFSSIGTRFKQQLQALMETLNTTEPHYIRCVKPNTVLKPGIFENFNVLGQLRCGGVLEAIRISCAGYPTKRTFDEFLDRFGMLAPDISDGSDEKSACIAICDRMGLKGYQIGKTKVFLRAGQMAELDARRTEILANAVRRIQRLIRTHLTRKEFIALRKATIHMQKLWRAQLARKLYEEMRREAASIRIQKHARAHADRKSYKKLLASAIVIQTGMRAMAARNEYRHRRRTKASIIVQTEWRRASAISAYKKQQKATLALQCLWRAKVARKELKKLKMAARETGALKEAKDKLEKRVEELTWRLDFEKHLRMDVEEAKGQEVAKLQNALDELQGQLDEANAATIREREAAKLAIEQAPPVIKEVPVVDETKLEMLRNHNEELEGEVGELKKKMEEFEAKFAEVENESKARLKEAEEAQLKSMQLQETIERLESNLSNLESENQVLRQQALVAAENVSLSEELQTLKSKIGSLETENEVLRSRPVAVEHITVPAGVLAESKALDNGHILEKEIVKPTKEPPVVPVLTKQGSLTEKQQENHDVLLKCLAEDKRFDKGRPVAACIVYKTLLQWRSFESEKTNIFDRITYTIRSAIESQENISDLSYWLSTTSTLLYLLQSSLKATNASTTASHRYRASPSTLFGRMASGLRSSSMSMGISSGYSGMVGKTNNQSKVEPKYPALLFKQHLAACIEKLFGMIRDNLKKEISPFLHLCIQAPRSVRARSMKGSSKNIHSNIVAKQQASSIHWQSIVNKLDQTLDIMSENHVPSMIMRKIFLQVFSFINVQLFNSLLLRRECCSFSNGEYLKLGLQELEQWCTKATDTNAGSSWDELQHIRQAVGFLVLHQKSQKSLNEITDELCPILGIPQIYRIGTMFWDDKYGTQGLSPDIISQMRVLLAEDSINIPNNSFLLDVDSSIPFSIEEIFRSFGEVNLSDVDPPPLIRQRSDFHFLLQQLNE | 1555 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 38078234 | 38091692 | + | Sed0015792.1 | Sed09g1420 | 726184 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed09g1420 | 1555 | FunFam | unconventional myosin-Va | 736 | 784 | - | - | |
| Sed09g1420 | 1555 | FunFam | Myosin XI D | 667 | 729 | - | - | |
| Sed09g1420 | 1555 | Coils | Coil | 876 | 910 | - | - | |
| Sed09g1420 | 1555 | ProSiteProfiles | Myosin motor domain profile. | 62 | 731 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1420 | 1555 | FunFam | Class V myosin | 439 | 578 | - | - | |
| Sed09g1420 | 1555 | FunFam | Myosin heavy chain | 252 | 307 | - | - | |
| Sed09g1420 | 1555 | CDD | MyosinXI_CBD | 1133 | 1520 | IPR037975 | GO:0007015(InterPro) | |
| Sed09g1420 | 1555 | Coils | Coil | 915 | 949 | - | - | |
| Sed09g1420 | 1555 | Gene3D | - | 439 | 623 | - | - | |
| Sed09g1420 | 1555 | CDD | MYSc_Myo11 | 76 | 719 | IPR036018 | - | |
| Sed09g1420 | 1555 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 37 | 785 | IPR027417 | - | |
| Sed09g1420 | 1555 | ProSiteProfiles | IQ motif profile. | 734 | 761 | - | - | |
| Sed09g1420 | 1555 | FunFam | unconventional myosin-Va | 833 | 880 | - | - | |
| Sed09g1420 | 1555 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 312 | 601 | - | - | |
| Sed09g1420 | 1555 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 8 | 57 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1420 | 1555 | PANTHER | MYOSIN | 12 | 1495 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Sed09g1420 | 1555 | Pfam | IQ calmodulin-binding motif | 855 | 874 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1420 | 1555 | Pfam | IQ calmodulin-binding motif | 807 | 826 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1420 | 1555 | Pfam | IQ calmodulin-binding motif | 758 | 777 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1420 | 1555 | Pfam | IQ calmodulin-binding motif | 784 | 803 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1420 | 1555 | Pfam | IQ calmodulin-binding motif | 737 | 754 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1420 | 1555 | Gene3D | Kinesin motor domain | 65 | 662 | IPR036961 | - | |
| Sed09g1420 | 1555 | SMART | DIL_2 | 1372 | 1479 | IPR002710 | - | |
| Sed09g1420 | 1555 | FunFam | unconventional myosin-Va | 785 | 832 | - | - | |
| Sed09g1420 | 1555 | ProSiteProfiles | IQ motif profile. | 853 | 882 | - | - | |
| Sed09g1420 | 1555 | ProSiteProfiles | IQ motif profile. | 757 | 786 | - | - | |
| Sed09g1420 | 1555 | FunFam | Myosin 2 | 312 | 428 | - | - | |
| Sed09g1420 | 1555 | Pfam | DIL domain | 1373 | 1476 | IPR002710 | - | |
| Sed09g1420 | 1555 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 784 | 882 | IPR027417 | - | |
| Sed09g1420 | 1555 | Gene3D | - | 667 | 729 | - | - | |
| Sed09g1420 | 1555 | Coils | Coil | 972 | 1082 | - | - | |
| Sed09g1420 | 1555 | Gene3D | - | 784 | 834 | - | - | |
| Sed09g1420 | 1555 | Gene3D | - | 733 | 783 | - | - | |
| Sed09g1420 | 1555 | ProSiteProfiles | IQ motif profile. | 805 | 834 | - | - | |
| Sed09g1420 | 1555 | Pfam | Myosin N-terminal SH3-like domain | 9 | 52 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1420 | 1555 | ProSiteProfiles | IQ motif profile. | 782 | 808 | - | - | |
| Sed09g1420 | 1555 | PRINTS | Myosin heavy chain signature | 149 | 174 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1420 | 1555 | PRINTS | Myosin heavy chain signature | 429 | 457 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1420 | 1555 | PRINTS | Myosin heavy chain signature | 92 | 111 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1420 | 1555 | PRINTS | Myosin heavy chain signature | 482 | 510 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1420 | 1555 | PRINTS | Myosin heavy chain signature | 196 | 223 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1420 | 1555 | SMART | MYSc_2a | 56 | 732 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1420 | 1555 | Gene3D | - | 252 | 310 | - | - | |
| Sed09g1420 | 1555 | SMART | iq_5 | 733 | 755 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1420 | 1555 | SMART | iq_5 | 804 | 826 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1420 | 1555 | SMART | iq_5 | 852 | 874 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1420 | 1555 | SMART | iq_5 | 829 | 851 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1420 | 1555 | SMART | iq_5 | 756 | 778 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1420 | 1555 | SMART | iq_5 | 781 | 803 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1420 | 1555 | Pfam | Myosin head (motor domain) | 64 | 719 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1420 | 1555 | ProSiteProfiles | Dilute domain profile. | 1182 | 1497 | IPR002710 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed08g1586 | Sed-Chr8:30963986 | Sed09g1420 | Sed-Chr9:38078234 | 0.00E+00 | dispersed | |
| Sed09g1420 | Sed-Chr9:38078234 | Sed11g0201 | Sed-Chr11:1805906 | 0.00E+00 | dispersed | |
| Sed09g1420 | Sed-Chr9:38078234 | Sed09g1421 | Sed-Chr9:38079153 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed09g1420 | K10357 | - | csv:101207221 | 2783.82 |