Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1420 ATGGGGACTCCAGTGAATATCATTGTCGGATCACATGTTTGGGTTGAGGAACCTGATGAAGCTTGGATTGATGGCCAAGTTACAGAAATTAAAGGAGAAAATGCCTCCATAATCACCACCAATGAAAAAAATGTTGTTGCAAAAATTTCGAGCATATATCCGAAAGACACGGAGGCGCCGCCGGCTGGAGTGGACGACATGACGAAACTGGCGTACCTCCATGAACCTGGAGTTCTGCATAATCTGGCTTGTCGGTTTTCTCTCAACGAGATTTACACTTACACCGGAAATATTCTAATTGCGGTGAATCCTTTCCGGCGACTGCCGCATTTGTATGATATTCATATGATGGAGCAGTATAAGGGAGCTACTTTCGGCGAGCTTAGTCCGCATCTTTTTGCCGTTGCAGATACTTGCTACAGATCAATGATTAACGACCAAGGAAGTCAGTCCATTTTAGTGAGTGGAGAAAGTGGTGCTGGTAAAACTGAAACAACAAAGATGCTCATGAGATATCTTGCATTCATGGGAGGCAGATCTGATACCGAAGGAAGATCAGTCGAGCAACAGGTTTTGGAGTCCAACCCTGTATTGGAAGCATTTGGAAATGCCAAAACCGTCAAAAACAACAATTCAAGTCGTTTTGGTAAATTTGTAGAAATACAATTTGATAAGAATTGGAAGATCTCTGGGGCTGCCATTCGTACATACCTTCTTGAACGATCGCGTGTTTGCCAAGTCTCAGATCCTGAGAGAAACTACCATTGTTTTTACATGCTCTGTGCTGCTCCACCAGAAGAGGTCAAGAAATACAAGTTAGGAGACCCGAGGACATTTCATTATCTTAATCAAACAAACTGTTACGAAGTGGCAAATGTTGATGATTCAAGAGAGTACTTAGAGACAAGAAATGCCATGGATGTTGTTGGAATCAGCCAGGATGAACAGGAAGCTATATTTCGTATTGTAGCTGCAATACTGCATCTTGGAAACATTAATTTCATCAAAGGGAAGGAAATTGACTCTTCCCAAGTGAAAGACGAGAAATCAAATTATCATCTTCAAACTGCAGCAGAGCTACTCATGTGCGATGCAAAGGCGCTGGAACTTTCGCTTTGCCAGCGTGTCATAGTGACTCCTGATGGTAAAATTACAAAGCCATTGGATCCAGATTCAGCAGCCTTGAGTCGTGACGCAATGGCAAAAACGGTGTATTCTAGGTTGTTTGATTGGATTGTGGACAAAATTAATAGTTCAATTGGCCAAGATCCTAATGCAGCGAGCTTAATCGGTGTCCTTGATATTTATGGATTTGAAAGCTTCAAGGTCAATAGTTTTGAGCAGCTTTGCATCAACCTCACCAATGAGAAGTTGCAGCAACACTTTAATCAGCATGTTTTCAAGATGGAGCAAGAGGAGTATACCAAAGAAGAAATTAATTGGAGCTATGTTGAGTTTGTAGATAATCAGGATGTCCTTGATCTTATTGAGAGGAAACCTGGAGGAATAATTGCTCTGCTTGATGAAGCCTGTATGTTTCCAAAGTCAACGCATGAAACATTTGCTCAAAAGATGTATCAGACATACAAAGCACATAAGCGTTTCAGCAAGCCAAAACTTGCTCGAACAGCTTTCACAATTAACCATTATGCTGGAGATGTTACATACCAAGCAGATCATTTTCTAGATAAAAACAAGGACTATGTAGTGGCAGAACATCAGGCTCTTCTGGATGCCTCAAAATGCTCTTTTGTTGCTAATCTTTTCCCTACACTTCCCGAGGAGACCTCGAAGCAATCCAAGTTTTCTTCTATTGGTACTCGGTTCAAGCAACAACTACAAGCTCTCATGGAAACATTGAATACTACAGAACCGCATTATATTAGATGTGTAAAGCCCAACACAGTCTTGAAGCCTGGAATCTTTGAGAACTTCAATGTGTTGGGCCAATTGAGGTGTGGGGGAGTGCTCGAAGCAATTAGAATAAGCTGTGCAGGATATCCAACAAAAAGAACATTTGATGAGTTCCTCGATCGATTTGGAATGCTTGCTCCAGATATTTCAGATGGGTCTGATGAAAAATCAGCATGTATTGCAATATGTGACAGAATGGGCTTAAAGGGTTATCAGATTGGAAAAACAAAAGTGTTTCTCAGAGCTGGACAAATGGCAGAGTTGGATGCACGCCGAACTGAAATATTGGCCAATGCTGTTAGACGCATCCAGCGACTAATCCGAACCCATCTAACTAGAAAAGAGTTTATTGCCTTGAGAAAGGCAACAATTCATATGCAGAAACTTTGGAGAGCACAACTTGCACGTAAGCTGTATGAGGAAATGAGGAGAGAAGCAGCTTCAATCCGTATACAGAAGCATGCACGTGCTCACGCAGATAGAAAATCTTACAAAAAATTACTTGCATCAGCTATAGTTATTCAAACTGGTATGCGTGCAATGGCAGCTAGAAACGAGTACAGACACAGAAGAAGAACAAAAGCTTCTATCATTGTTCAGACTGAATGGCGAAGGGCATCAGCTATTTCAGCTTACAAAAAACAACAGAAGGCAACTCTTGCTCTTCAATGCCTCTGGCGAGCTAAAGTTGCAAGAAAAGAGCTCAAAAAGCTAAAGATGGCTGCAAGAGAAACAGGGGCACTAAAGGAGGCAAAGGACAAATTGGAGAAGCGTGTCGAGGAGCTAACTTGGCGCCTAGATTTTGAGAAGCACTTGAGGATGGATGTTGAAGAAGCCAAGGGGCAAGAGGTTGCAAAGTTACAAAATGCTTTGGACGAACTGCAAGGACAGCTGGATGAAGCCAATGCTGCAACCATACGTGAGAGAGAAGCAGCAAAATTGGCCATTGAACAAGCTCCACCAGTCATTAAGGAAGTTCCTGTGGTGGACGAGACCAAACTGGAAATGCTGAGAAATCACAATGAAGAACTTGAGGGGGAGGTTGGAGAGCTGAAGAAGAAAATGGAGGAATTCGAAGCGAAGTTTGCTGAAGTAGAGAATGAAAGTAAAGCTAGACTCAAGGAGGCAGAAGAGGCACAATTGAAATCAATGCAACTTCAAGAGACTATTGAGAGATTGGAATCAAATTTATCAAACCTTGAGTCCGAGAACCAGGTTCTGCGCCAGCAGGCTTTGGTTGCAGCAGAAAATGTGTCCCTCTCTGAAGAACTGCAAACCCTCAAGAGTAAGATTGGAAGTTTAGAGACAGAGAATGAAGTTCTTCGCAGTCGGCCAGTAGCTGTTGAACATATTACTGTTCCTGCAGGGGTGCTTGCAGAAAGCAAGGCTTTAGATAACGGACATATACTGGAAAAAGAGATTGTTAAACCTACTAAGGAACCACCTGTTGTTCCCGTCCTAACTAAACAAGGCTCACTCACTGAAAAGCAACAGGAAAATCATGATGTCCTGCTCAAGTGCTTAGCAGAAGACAAGCGTTTTGACAAAGGCAGACCAGTTGCAGCTTGTATTGTCTACAAGACACTTCTTCAATGGAGATCTTTTGAATCAGAGAAGACGAATATATTTGACAGAATTACTTACACAATCAGATCTGCTATAGAGAGTCAAGAAAATATCAGTGATCTTTCATATTGGCTTTCAACCACTTCTACCCTTCTTTATCTCCTTCAAAGTTCACTCAAGGCAACCAATGCAAGTACTACAGCTTCACATCGCTACCGAGCTTCCCCTTCAACCTTATTTGGTCGTATGGCATCTGGTCTTCGATCATCTTCAATGAGTATGGGAATTTCCAGTGGATACAGTGGAATGGTGGGAAAGACAAACAATCAATCTAAAGTTGAACCCAAGTACCCAGCATTGCTCTTTAAGCAACATCTTGCAGCTTGCATTGAAAAATTGTTTGGGATGATTCGTGATAATTTAAAGAAAGAAATTAGCCCTTTCTTGCATCTATGCATACAGGCACCAAGATCAGTGAGAGCCAGATCAATGAAGGGGTCATCTAAAAATATCCATTCAAACATTGTTGCCAAACAGCAAGCATCAAGTATTCATTGGCAAAGCATTGTTAATAAGCTAGACCAGACCTTGGATATAATGTCTGAAAACCATGTTCCCTCCATGATCATGAGAAAAATCTTCCTCCAGGTTTTCTCATTCATAAATGTCCAGCTCTTCAATAGCTTATTACTACGACGCGAGTGCTGTTCCTTCAGTAATGGAGAGTACTTAAAGTTAGGTCTGCAGGAGTTGGAGCAATGGTGTACCAAAGCTACTGATACGAATGCTGGCTCTTCCTGGGATGAACTTCAACACATAAGACAAGCAGTAGGATTTCTGGTGTTACATCAGAAGTCCCAGAAAAGTTTGAATGAGATCACAGATGAATTATGCCCGATTCTGGGCATCCCGCAAATATATCGCATAGGAACGATGTTTTGGGACGACAAATATGGAACTCAGGGATTATCTCCCGATATAATTAGTCAAATGAGAGTCCTATTGGCAGAAGACTCTATCAACATCCCAAACAACTCTTTCCTACTTGATGTGGATTCAAGCATACCGTTTTCAATAGAAGAAATATTCCGTTCCTTTGGCGAGGTTAACCTATCCGATGTCGACCCGCCACCACTTATACGACAAAGATCAGATTTCCATTTTCTTCTGCAGCAGCTGAATGAATGA 4668 41.82 MGTPVNIIVGSHVWVEEPDEAWIDGQVTEIKGENASIITTNEKNVVAKISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLACRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGATFGELSPHLFAVADTCYRSMINDQGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSDTEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNWKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEEVKKYKLGDPRTFHYLNQTNCYEVANVDDSREYLETRNAMDVVGISQDEQEAIFRIVAAILHLGNINFIKGKEIDSSQVKDEKSNYHLQTAAELLMCDAKALELSLCQRVIVTPDGKITKPLDPDSAALSRDAMAKTVYSRLFDWIVDKINSSIGQDPNAASLIGVLDIYGFESFKVNSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIERKPGGIIALLDEACMFPKSTHETFAQKMYQTYKAHKRFSKPKLARTAFTINHYAGDVTYQADHFLDKNKDYVVAEHQALLDASKCSFVANLFPTLPEETSKQSKFSSIGTRFKQQLQALMETLNTTEPHYIRCVKPNTVLKPGIFENFNVLGQLRCGGVLEAIRISCAGYPTKRTFDEFLDRFGMLAPDISDGSDEKSACIAICDRMGLKGYQIGKTKVFLRAGQMAELDARRTEILANAVRRIQRLIRTHLTRKEFIALRKATIHMQKLWRAQLARKLYEEMRREAASIRIQKHARAHADRKSYKKLLASAIVIQTGMRAMAARNEYRHRRRTKASIIVQTEWRRASAISAYKKQQKATLALQCLWRAKVARKELKKLKMAARETGALKEAKDKLEKRVEELTWRLDFEKHLRMDVEEAKGQEVAKLQNALDELQGQLDEANAATIREREAAKLAIEQAPPVIKEVPVVDETKLEMLRNHNEELEGEVGELKKKMEEFEAKFAEVENESKARLKEAEEAQLKSMQLQETIERLESNLSNLESENQVLRQQALVAAENVSLSEELQTLKSKIGSLETENEVLRSRPVAVEHITVPAGVLAESKALDNGHILEKEIVKPTKEPPVVPVLTKQGSLTEKQQENHDVLLKCLAEDKRFDKGRPVAACIVYKTLLQWRSFESEKTNIFDRITYTIRSAIESQENISDLSYWLSTTSTLLYLLQSSLKATNASTTASHRYRASPSTLFGRMASGLRSSSMSMGISSGYSGMVGKTNNQSKVEPKYPALLFKQHLAACIEKLFGMIRDNLKKEISPFLHLCIQAPRSVRARSMKGSSKNIHSNIVAKQQASSIHWQSIVNKLDQTLDIMSENHVPSMIMRKIFLQVFSFINVQLFNSLLLRRECCSFSNGEYLKLGLQELEQWCTKATDTNAGSSWDELQHIRQAVGFLVLHQKSQKSLNEITDELCPILGIPQIYRIGTMFWDDKYGTQGLSPDIISQMRVLLAEDSINIPNNSFLLDVDSSIPFSIEEIFRSFGEVNLSDVDPPPLIRQRSDFHFLLQQLNE 1555
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 38078234 38091692 + Sed0015792.1 Sed09g1420 726184
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1420 1555 FunFam unconventional myosin-Va 736 784 - -
Sed09g1420 1555 FunFam Myosin XI D 667 729 - -
Sed09g1420 1555 Coils Coil 876 910 - -
Sed09g1420 1555 ProSiteProfiles Myosin motor domain profile. 62 731 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed09g1420 1555 FunFam Class V myosin 439 578 - -
Sed09g1420 1555 FunFam Myosin heavy chain 252 307 - -
Sed09g1420 1555 CDD MyosinXI_CBD 1133 1520 IPR037975 GO:0007015(InterPro)
Sed09g1420 1555 Coils Coil 915 949 - -
Sed09g1420 1555 Gene3D - 439 623 - -
Sed09g1420 1555 CDD MYSc_Myo11 76 719 IPR036018 -
Sed09g1420 1555 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 785 IPR027417 -
Sed09g1420 1555 ProSiteProfiles IQ motif profile. 734 761 - -
Sed09g1420 1555 FunFam unconventional myosin-Va 833 880 - -
Sed09g1420 1555 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Sed09g1420 1555 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed09g1420 1555 PANTHER MYOSIN 12 1495 - GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER)
Sed09g1420 1555 Pfam IQ calmodulin-binding motif 855 874 IPR000048 GO:0005515(InterPro)
Sed09g1420 1555 Pfam IQ calmodulin-binding motif 807 826 IPR000048 GO:0005515(InterPro)
Sed09g1420 1555 Pfam IQ calmodulin-binding motif 758 777 IPR000048 GO:0005515(InterPro)
Sed09g1420 1555 Pfam IQ calmodulin-binding motif 784 803 IPR000048 GO:0005515(InterPro)
Sed09g1420 1555 Pfam IQ calmodulin-binding motif 737 754 IPR000048 GO:0005515(InterPro)
Sed09g1420 1555 Gene3D Kinesin motor domain 65 662 IPR036961 -
Sed09g1420 1555 SMART DIL_2 1372 1479 IPR002710 -
Sed09g1420 1555 FunFam unconventional myosin-Va 785 832 - -
Sed09g1420 1555 ProSiteProfiles IQ motif profile. 853 882 - -
Sed09g1420 1555 ProSiteProfiles IQ motif profile. 757 786 - -
Sed09g1420 1555 FunFam Myosin 2 312 428 - -
Sed09g1420 1555 Pfam DIL domain 1373 1476 IPR002710 -
Sed09g1420 1555 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 784 882 IPR027417 -
Sed09g1420 1555 Gene3D - 667 729 - -
Sed09g1420 1555 Coils Coil 972 1082 - -
Sed09g1420 1555 Gene3D - 784 834 - -
Sed09g1420 1555 Gene3D - 733 783 - -
Sed09g1420 1555 ProSiteProfiles IQ motif profile. 805 834 - -
Sed09g1420 1555 Pfam Myosin N-terminal SH3-like domain 9 52 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed09g1420 1555 ProSiteProfiles IQ motif profile. 782 808 - -
Sed09g1420 1555 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed09g1420 1555 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed09g1420 1555 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed09g1420 1555 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed09g1420 1555 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed09g1420 1555 SMART MYSc_2a 56 732 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed09g1420 1555 Gene3D - 252 310 - -
Sed09g1420 1555 SMART iq_5 733 755 IPR000048 GO:0005515(InterPro)
Sed09g1420 1555 SMART iq_5 804 826 IPR000048 GO:0005515(InterPro)
Sed09g1420 1555 SMART iq_5 852 874 IPR000048 GO:0005515(InterPro)
Sed09g1420 1555 SMART iq_5 829 851 IPR000048 GO:0005515(InterPro)
Sed09g1420 1555 SMART iq_5 756 778 IPR000048 GO:0005515(InterPro)
Sed09g1420 1555 SMART iq_5 781 803 IPR000048 GO:0005515(InterPro)
Sed09g1420 1555 Pfam Myosin head (motor domain) 64 719 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed09g1420 1555 ProSiteProfiles Dilute domain profile. 1182 1497 IPR002710 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1586 Sed-Chr8:30963986 Sed09g1420 Sed-Chr9:38078234 0.00E+00 dispersed
Sed09g1420 Sed-Chr9:38078234 Sed11g0201 Sed-Chr11:1805906 0.00E+00 dispersed
Sed09g1420 Sed-Chr9:38078234 Sed09g1421 Sed-Chr9:38079153 0.00E+00 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1420 K10357 - csv:101207221 2783.82