Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed09g1421 | ATGACGAAACTGGCGTACCTCCATGAACCTGGAGTTCTGCATAATCTGGCTTGTCGGTTTTCTCTCAACGAGATTTACACTTACACCGGAAATATTCTAATTGCGGTGAATCCTTTCCGGCGACTGCCGCATTTGTATGATATTCATATGATGGAGCAGTATAAGGGAGCTACTTTCGGCGAGCTTAGTCCGCATCTTTTTGCCGTTGCAGATACTTGCTACAGATCAATGATTAACGACCAAGGAAGTCAGTCCATTTTAGTGAGTGGAGAAAGTGGTGCTGGTAAAACTGAAACAACAAAGATGCTCATGAGATATCTTGCATTCATGGGAGGCAGATCTGATACCGAAGGAAGATCAGTCGAGCAACAGGTTTTGGAGTCCAACCCTGTATTGGAAGCATTTGGAAATGCCAAAACCGTCAAAAACAACAATTCAAGTCGTTTTGGTAAATTTGTAGAAATACAATTTGATAAGAATTGGAAGATCTCTGGGGCTGCCATTCGTACATACCTTCTTGAACGATCGCGTGTTTGCCAAGTCTCAGATCCTGAGAGAAACTACCATTGTTTTTACATGCTCTGTGCTGCTCCACCAGAAGAGGTCAAGAAATACAAGTTAGGAGACCCGAGGACATTTCATTATCTTAATCAAACAAACTGTTACGAAGTGGCAAATGTTGATGATTCAAGAGAGTACTTAGAGACAAGAAATGCCATGGATGTTGTTGGAATCAGCCAGGATGAACAGGAAGCTATATTTCGTATTGTAGCTGCAATACTGCATCTTGGAAACATTAATTTCATCAAAGGGAAGGAAATTGACTCTTCCCAAGTGAAAGACGAGAAATCAAATTATCATCTTCAAACTGCAGCAGAGCTACTCATGTGCGATGCAAAGGCGCTGGAACTTTCGCTTTGCCAGCGTGTCATAGTGACTCCTGATGGTAAAATTACAAAGCCATTGGATCCAGATTCAGCAGCCTTGAGTCGTGACGCAATGGCAAAAACGGTGTATTCTAGGTTGTTTGATTGGATTGTGGACAAAATTAATAGTTCAATTGGCCAAGATCCTAATGCAGCGAGCTTAATCGGTGTCCTTGATATTTATGGATTTGAAAGCTTCAAGGTCAATAGTTTTGAGCAGCTTTGCATCAACCTCACCAATGAGAAGTTGCAGCAACACTTTAATCAGCATGTTTTCAAGATGGAGCAAGAGGAGTATACCAAAGAAGAAATTAATTGGAGCTATGTTGAGTTTGTAGATAATCAGGATGTCCTTGATCTTATTGAGAGGAAACCTGGAGGAATAATTGCTCTGCTTGATGAAGCCTGTATGTTTCCAAAGTCAACGCATGAAACATTTGCTCAAAAGATGTATCAGACATACAAAGCACATAAGCGTTTCAGCAAGCCAAAACTTGCTCGAACAGCTTTCACAATTAACCATTATGCTGGAGATGTTACATACCAAGCAGATCATTTTCTAGATAAAAACAAGGACTATGTAGTGGCAGAACATCAGGCTCTTCTGGATGCCTCAAAATGCTCTTTTGTTGCTAATCTTTTCCCTACACTTCCCGAGGAGACCTCGAAGCAATCCAAGTTTTCTTCTATTGGTACTCGGTTCAAGCAACAACTACAAGCTCTCATGGAAACATTGAATACTACAGAACCGCATTATATTAGATGTGTAAAGCCCAACACAGTCTTGAAGCCTGGAATCTTTGAGAACTTCAATGTGTTGGGCCAATTGAGGTGTGGGGGAGTGCTCGAAGCAATTAGAATAAGCTGTGCAGGATATCCAACAAAAAGAACATTTGATGAGTTCCTCGATCGATTTGGAATGCTTGCTCCAGATATTTCAGATGGGTCTGATGAAAAATCAGCATGTATTGCAATATGTGACAGAATGGGCTTAAAGGGTTATCAGATTGGAAAAACAAAAGTGTTTCTCAGAGCTGGACAAATGGCAGAGTTGGATGCACGCCGAACTGAAATATTGGCCAATGCTGTTAGACGCATCCAGCGACTAATCCGAACCCATCTAACTAGAAAAGAGTTTATTGCCTTGAGAAAGGCAACAATTCATATGCAGAAACTTTGGAGAGCACAACTTGCACGTAAGCTGTATGAGGAAATGAGGAGAGAAGCAGCTTCAATCCGTATACAGAAGCATGCACGTGCTCACGCAGATAGAAAATCTTACAAAAAATTACTTGCATCAGCTATAGTTATTCAAACTGGTATGCGTGCAATGGCAGCTAGAAACGAGTACAGACACAGAAGAAGAACAAAAGCTTCTATCATTGTTCAGACTGAATGGCGAAGGGCATCAGCTATTTCAGCTTACAAAAAACAACAGAAGGCAACTCTTGCTCTTCAATGCCTCTGGCGAGCTAAAGTTGCAAGAAAAGAGCTCAAAAAGCTAAAGATGGCTGCAAGAGAAACAGGGGCACTAAAGGAGGCAAAGGACAAATTGGAGAAGCGTGTCGAGGAGCTAACTTGGCGCCTAGATTTTGAGAAGCACTTGAGGATGGATGTTGAAGAAGCCAAGGGGCAAGAGGTTGCAAAGTTACAAAATGCTTTGGACGAACTGCAAGGACAGCTGGATGAAGCCAATGCTGCAACCATACGTGAGAGAGAAGCAGCAAAATTGGCCATTGAACAAGCTCCACCAGTCATTAAGGAAGTTCCTGTGGTGGACGAGACCAAACTGGAAATGCTGAGAAATCACAATGAAGAACTTGAGGGGGAGGTTGGAGAGCTGAAGAAGAAAATGGAGGAATTCGAAGCGAAGTTTGCTGAAGTAGAGAATGAAAGTAAAGCTAGACTCAAGGAGGCAGAAGAGGCACAATTGAAATCAATGCAACTTCAAGAGACTATTGAGAGATTGGAATCAAATTTATCAAACCTTGAGTCCGAGAACCAGGTTCTGCGCCAGCAGGCTTTGGTTGCAGCAGAAAATGTGTCCCTCTCTGAAGAACTGCAAACCCTCAAGAGTAAGATTGGAAGTTTAGAGACAGAGAATGAAGTTCTTCGCAGTCGGCCAGTAGCTGTTGAACATATTACTGTTCCTGCAGGGGTGCTTGCAGAAAGCAAGGCTTTAGATAACGGACATATACTGGAAAAAGAGATTGTTAAACCTACTAAGGAACCACCTGTTGTTCCCGTCCTAACTAAACAAGGCTCACTCACTGAAAAGCAACAGGAAAATCATGATGTCCTGCTCAAGTGCTTAGCAGAAGACAAGCGTTTTGACAAAGGCAGACCAGTTGCAGCTTGTATTGTCTACAAGACACTTCTTCAATGGAGATCTTTTGAATCAGAGAAGACGAATATATTTGACAGAATTACTTACACAATCAGATCTGCTATAGAGAGTCAAGAAAATATCAGTGATCTTTCATATTGGCTTTCAACCACTTCTACCCTTCTTTATCTCCTTCAAAGTTCACTCAAGGCAACCAATGCAAGTACTACAGCTTCACATCGCTACCGAGCTTCCCCTTCAACCTTATTTGGTCGTATGGCATCTGGTCTTCGATCATCTTCAATGAGTATGGGAATTTCCAGTGGATACAGTGGAATGGTGGGAAAGACAAACAATCAATCTAAAGTTGAACCCAAGTACCCAGCATTGCTCTTTAAGCAACATCTTGCAGCTTGCATTGAAAAATTGTTTGGGATGATTCGTGATAATTTAAAGAAAGAAATTAGCCCTTTCTTGCATCTATGCATACAGGCACCAAGATCAGTGAGAGCCAGATCAATGAAGGGGTCATCTAAAAATATCCATTCAAACATTGTTGCCAAACAGCAAGCATCAAGTATTCATTGGCAAAGCATTGTTAATAAGCTAGACCAGACCTTGGATATAATGTCTGAAAACCATGTTCCCTCCATGATCATGAGAAAAATCTTCCTCCAGGTTTTCTCATTCATAAATGTCCAGCTCTTCAATAGCTTATTACTACGACGCGAGTGCTGTTCCTTCAGTAATGGAGAGTACTTAAAGTTAGGTCTGCAGGAGTTGGAGCAATGGTGTACCAAAGCTACTGATACGAATGCTGGCTCTTCCTGGGATGAACTTCAACACATAAGACAAGCAGTAGGATTTCTGGTGTTACATCAGAAGTCCCAGAAAAGTTTGAATGAGATCACAGATGAATTATGCCCGATTCTGGGCATCCCGCAAATATATCGCATAGGAACGATGTTTTGGGACGACAAATATGGAACTCAGGGATTATCTCCCGATATAATTAGTCAAATGAGAGTCCTATTGGCAGAAGACTCTATCAACATCCCAAACAACTCTTTCCTACTTGATGTGGATTCAAGCATACCGTTTTCAATAGAAGAAATATTCCGTTCCTTTGGCGAGGTTAACCTATCCGATGTCGACCCGCCACCACTTATACGACAAAGATCAGATTTCCATTTTCTTCTGCAGCAGCTGAATGAATGA | 4470 | 41.68 | MTKLAYLHEPGVLHNLACRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGATFGELSPHLFAVADTCYRSMINDQGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSDTEGRSVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNWKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEEVKKYKLGDPRTFHYLNQTNCYEVANVDDSREYLETRNAMDVVGISQDEQEAIFRIVAAILHLGNINFIKGKEIDSSQVKDEKSNYHLQTAAELLMCDAKALELSLCQRVIVTPDGKITKPLDPDSAALSRDAMAKTVYSRLFDWIVDKINSSIGQDPNAASLIGVLDIYGFESFKVNSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIERKPGGIIALLDEACMFPKSTHETFAQKMYQTYKAHKRFSKPKLARTAFTINHYAGDVTYQADHFLDKNKDYVVAEHQALLDASKCSFVANLFPTLPEETSKQSKFSSIGTRFKQQLQALMETLNTTEPHYIRCVKPNTVLKPGIFENFNVLGQLRCGGVLEAIRISCAGYPTKRTFDEFLDRFGMLAPDISDGSDEKSACIAICDRMGLKGYQIGKTKVFLRAGQMAELDARRTEILANAVRRIQRLIRTHLTRKEFIALRKATIHMQKLWRAQLARKLYEEMRREAASIRIQKHARAHADRKSYKKLLASAIVIQTGMRAMAARNEYRHRRRTKASIIVQTEWRRASAISAYKKQQKATLALQCLWRAKVARKELKKLKMAARETGALKEAKDKLEKRVEELTWRLDFEKHLRMDVEEAKGQEVAKLQNALDELQGQLDEANAATIREREAAKLAIEQAPPVIKEVPVVDETKLEMLRNHNEELEGEVGELKKKMEEFEAKFAEVENESKARLKEAEEAQLKSMQLQETIERLESNLSNLESENQVLRQQALVAAENVSLSEELQTLKSKIGSLETENEVLRSRPVAVEHITVPAGVLAESKALDNGHILEKEIVKPTKEPPVVPVLTKQGSLTEKQQENHDVLLKCLAEDKRFDKGRPVAACIVYKTLLQWRSFESEKTNIFDRITYTIRSAIESQENISDLSYWLSTTSTLLYLLQSSLKATNASTTASHRYRASPSTLFGRMASGLRSSSMSMGISSGYSGMVGKTNNQSKVEPKYPALLFKQHLAACIEKLFGMIRDNLKKEISPFLHLCIQAPRSVRARSMKGSSKNIHSNIVAKQQASSIHWQSIVNKLDQTLDIMSENHVPSMIMRKIFLQVFSFINVQLFNSLLLRRECCSFSNGEYLKLGLQELEQWCTKATDTNAGSSWDELQHIRQAVGFLVLHQKSQKSLNEITDELCPILGIPQIYRIGTMFWDDKYGTQGLSPDIISQMRVLLAEDSINIPNNSFLLDVDSSIPFSIEEIFRSFGEVNLSDVDPPPLIRQRSDFHFLLQQLNE | 1489 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 38079153 | 38091692 | + | Sed0015792.2 | Sed09g1421 | 726185 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed09g1421 | 1489 | Coils | Coil | 849 | 883 | - | - | |
| Sed09g1421 | 1489 | FunFam | Myosin heavy chain | 186 | 241 | - | - | |
| Sed09g1421 | 1489 | CDD | MyosinXI_CBD | 1067 | 1454 | IPR037975 | GO:0007015(InterPro) | |
| Sed09g1421 | 1489 | FunFam | Myosin 2 | 246 | 362 | - | - | |
| Sed09g1421 | 1489 | FunFam | Class V myosin | 373 | 512 | - | - | |
| Sed09g1421 | 1489 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 719 | IPR027417 | - | |
| Sed09g1421 | 1489 | PRINTS | Myosin heavy chain signature | 26 | 45 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1421 | 1489 | PRINTS | Myosin heavy chain signature | 416 | 444 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1421 | 1489 | PRINTS | Myosin heavy chain signature | 363 | 391 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1421 | 1489 | PRINTS | Myosin heavy chain signature | 130 | 157 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1421 | 1489 | PRINTS | Myosin heavy chain signature | 83 | 108 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1421 | 1489 | ProSiteProfiles | IQ motif profile. | 691 | 720 | - | - | |
| Sed09g1421 | 1489 | FunFam | unconventional myosin-Va | 767 | 814 | - | - | |
| Sed09g1421 | 1489 | ProSiteProfiles | IQ motif profile. | 739 | 768 | - | - | |
| Sed09g1421 | 1489 | Gene3D | - | 373 | 557 | - | - | |
| Sed09g1421 | 1489 | SMART | DIL_2 | 1306 | 1413 | IPR002710 | - | |
| Sed09g1421 | 1489 | ProSiteProfiles | IQ motif profile. | 668 | 695 | - | - | |
| Sed09g1421 | 1489 | ProSiteProfiles | IQ motif profile. | 787 | 816 | - | - | |
| Sed09g1421 | 1489 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 246 | 535 | - | - | |
| Sed09g1421 | 1489 | FunFam | unconventional myosin-Va | 670 | 718 | - | - | |
| Sed09g1421 | 1489 | Pfam | IQ calmodulin-binding motif | 741 | 760 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1421 | 1489 | Pfam | IQ calmodulin-binding motif | 718 | 737 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1421 | 1489 | Pfam | IQ calmodulin-binding motif | 692 | 711 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1421 | 1489 | Pfam | IQ calmodulin-binding motif | 789 | 808 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1421 | 1489 | Pfam | IQ calmodulin-binding motif | 671 | 688 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1421 | 1489 | Coils | Coil | 906 | 1016 | - | - | |
| Sed09g1421 | 1489 | CDD | MYSc_Myo11 | 10 | 653 | IPR036018 | - | |
| Sed09g1421 | 1489 | Pfam | Myosin head (motor domain) | 1 | 653 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1421 | 1489 | PANTHER | MYOSIN | 1 | 1429 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Sed09g1421 | 1489 | SMART | iq_5 | 786 | 808 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1421 | 1489 | SMART | iq_5 | 667 | 689 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1421 | 1489 | SMART | iq_5 | 738 | 760 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1421 | 1489 | SMART | iq_5 | 763 | 785 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1421 | 1489 | SMART | iq_5 | 715 | 737 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1421 | 1489 | SMART | iq_5 | 690 | 712 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1421 | 1489 | SMART | MYSc_2a | 1 | 666 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1421 | 1489 | Pfam | DIL domain | 1307 | 1410 | IPR002710 | - | |
| Sed09g1421 | 1489 | FunFam | unconventional myosin-Va | 719 | 766 | - | - | |
| Sed09g1421 | 1489 | Gene3D | - | 186 | 244 | - | - | |
| Sed09g1421 | 1489 | Gene3D | Kinesin motor domain | 1 | 596 | IPR036961 | - | |
| Sed09g1421 | 1489 | Coils | Coil | 810 | 844 | - | - | |
| Sed09g1421 | 1489 | ProSiteProfiles | Dilute domain profile. | 1116 | 1431 | IPR002710 | - | |
| Sed09g1421 | 1489 | ProSiteProfiles | Myosin motor domain profile. | 1 | 665 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1421 | 1489 | ProSiteProfiles | IQ motif profile. | 716 | 742 | - | - | |
| Sed09g1421 | 1489 | Gene3D | - | 601 | 663 | - | - | |
| Sed09g1421 | 1489 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 719 | 816 | IPR027417 | - | |
| Sed09g1421 | 1489 | Gene3D | - | 667 | 717 | - | - | |
| Sed09g1421 | 1489 | Gene3D | - | 718 | 768 | - | - | |
| Sed09g1421 | 1489 | FunFam | Myosin XI D | 601 | 663 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed09g1421 | Sed-Chr9:38079153 | Sed11g0201 | Sed-Chr11:1805906 | 0.00E+00 | dispersed | |
| Sed09g1420 | Sed-Chr9:38078234 | Sed09g1421 | Sed-Chr9:38079153 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed09g1421 | K10357 | - | csv:101207221 | 2666.72 |