Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g1437 | ATGGAGCTCGGCCTGAGCCTAGGCGACGCCCCGAAGCCCTTCCGCTTCGCCGACAAGCAACCGCCGCCGCCGCACCGGAGAGATTCAGAGCTCTGCTTCGACCTATCGATCGGCCGTCCGGTCGCCGGGGTCAAAGCACACGACGGCGAAAAACCTAATCGGAGAGAAGAAGATTCCGACGGCAACGAAGATCCGCCAGTTCAACTCGATCTCCTCCCTCACCATCCCGTTCCTCGAACCCTAACGAATCCGTACCAAGGATTTCCATGGCCGTCGTCCGAAAACGACGATGGCGAGGATCGAGCCGCGTCGGCGAACAGCGCGGCGTCGTCGTTTCCGATGGAGTTCGGACTGTACGGCGGCGGCGGAAACGGCGGTTGCCGGAGAGATCAGGTCGAATCGGAGGAGGAATCCGGCTCGGCGAGGAAGAAACTCCGACTCTCGAAAGAGCAATCGGCGTTTCTGGAAGAAAGCTTCAAAGAACACAATACATTGAATCCTAAACAGAAACTTGCTCTGGCGAAGCAATTGAATCTTCGTCCTCGCCAAGTGGAAGTTTGGTTTCAAAACAGGAGAGCCAGGACGAAATTGAAGCAAACAGAGGTAGATTGCGAGTATCTAAAGCGATGCTGCGAAACATTAACAGATGAGAATCGACGGCTACAAAAGGAGCTTCAAGAATTAAGAGCTCTGAAATCGACCAACTCATTCTACACGCACTCGCCCGCGACCACACTCACCATGTGCCCCTCATGCGAAAAAGTAACCACCTCAACCGCCACCGCCACCGCCGCGATCTCGAAACGGTCGGGTTTTGGCATTGGAGGGCGAGGAGGGAGTTCTTCACCCTCCTTGCCGTTTTGTGCAAAAATTCAGTCTCATCAGTCAACAGGGTAA | 897 | 55.07 | MELGLSLGDAPKPFRFADKQPPPPHRRDSELCFDLSIGRPVAGVKAHDGEKPNRREEDSDGNEDPPVQLDLLPHHPVPRTLTNPYQGFPWPSSENDDGEDRAASANSAASSFPMEFGLYGGGGNGGCRRDQVESEEESGSARKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLQKELQELRALKSTNSFYTHSPATTLTMCPSCEKVTTSTATATAAISKRSGFGIGGRGGSSSPSLPFCAKIQSHQSTG | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 38253639 | 38255784 | + | Sed0013910.1 | Sed09g1437 | 726201 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g1437 | 298 | SUPERFAMILY | Homeodomain-like | 135 | 199 | IPR009057 | - | |
Sed09g1437 | 298 | MobiDBLite | consensus disorder prediction | 272 | 298 | - | - | |
Sed09g1437 | 298 | MobiDBLite | consensus disorder prediction | 19 | 33 | - | - | |
Sed09g1437 | 298 | Coils | Coil | 211 | 234 | - | - | |
Sed09g1437 | 298 | Gene3D | - | 146 | 196 | - | - | |
Sed09g1437 | 298 | ProSiteProfiles | 'Homeobox' domain profile. | 138 | 198 | IPR001356 | GO:0003677(InterPro) | |
Sed09g1437 | 298 | CDD | homeodomain | 142 | 199 | IPR001356 | GO:0003677(InterPro) | |
Sed09g1437 | 298 | SMART | HOX_1 | 140 | 202 | IPR001356 | GO:0003677(InterPro) | |
Sed09g1437 | 298 | MobiDBLite | consensus disorder prediction | 44 | 62 | - | - | |
Sed09g1437 | 298 | SMART | halz | 198 | 241 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed09g1437 | 298 | ProSitePatterns | 'Homeobox' domain signature. | 173 | 196 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Sed09g1437 | 298 | Pfam | Homeobox associated leucine zipper | 198 | 232 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed09g1437 | 298 | FunFam | Homeobox-leucine zipper protein HAT22 | 146 | 192 | - | - | |
Sed09g1437 | 298 | MobiDBLite | consensus disorder prediction | 123 | 142 | - | - | |
Sed09g1437 | 298 | MobiDBLite | consensus disorder prediction | 1 | 109 | - | - | |
Sed09g1437 | 298 | Pfam | Homeodomain | 142 | 196 | IPR001356 | GO:0003677(InterPro) | |
Sed09g1437 | 298 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 55 | 262 | IPR050762 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1370 | Sed-Chr5:26628594 | Sed09g1437 | Sed-Chr9:38253639 | 8.70E-52 | dispersed | |
Sed07g0690 | Sed-Chr7:5141100 | Sed09g1437 | Sed-Chr9:38253639 | 2.80E-62 | dispersed | |
Sed08g0440 | Sed-Chr8:2723647 | Sed09g1437 | Sed-Chr9:38253639 | 7.50E-40 | dispersed | |
Sed09g1437 | Sed-Chr9:38253639 | Sed12g1276 | Sed-Chr12:9306669 | 4.10E-62 | dispersed | |
Sed07g0689 | Sed-Chr7:5141100 | Sed09g1437 | Sed-Chr9:38253639 | 1.70E-97 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39611 | PF00046 | Homeodomain | 1.50E-15 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g1437 | K09338 | - | csv:101221600 | 412.149 |