Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1437 ATGGAGCTCGGCCTGAGCCTAGGCGACGCCCCGAAGCCCTTCCGCTTCGCCGACAAGCAACCGCCGCCGCCGCACCGGAGAGATTCAGAGCTCTGCTTCGACCTATCGATCGGCCGTCCGGTCGCCGGGGTCAAAGCACACGACGGCGAAAAACCTAATCGGAGAGAAGAAGATTCCGACGGCAACGAAGATCCGCCAGTTCAACTCGATCTCCTCCCTCACCATCCCGTTCCTCGAACCCTAACGAATCCGTACCAAGGATTTCCATGGCCGTCGTCCGAAAACGACGATGGCGAGGATCGAGCCGCGTCGGCGAACAGCGCGGCGTCGTCGTTTCCGATGGAGTTCGGACTGTACGGCGGCGGCGGAAACGGCGGTTGCCGGAGAGATCAGGTCGAATCGGAGGAGGAATCCGGCTCGGCGAGGAAGAAACTCCGACTCTCGAAAGAGCAATCGGCGTTTCTGGAAGAAAGCTTCAAAGAACACAATACATTGAATCCTAAACAGAAACTTGCTCTGGCGAAGCAATTGAATCTTCGTCCTCGCCAAGTGGAAGTTTGGTTTCAAAACAGGAGAGCCAGGACGAAATTGAAGCAAACAGAGGTAGATTGCGAGTATCTAAAGCGATGCTGCGAAACATTAACAGATGAGAATCGACGGCTACAAAAGGAGCTTCAAGAATTAAGAGCTCTGAAATCGACCAACTCATTCTACACGCACTCGCCCGCGACCACACTCACCATGTGCCCCTCATGCGAAAAAGTAACCACCTCAACCGCCACCGCCACCGCCGCGATCTCGAAACGGTCGGGTTTTGGCATTGGAGGGCGAGGAGGGAGTTCTTCACCCTCCTTGCCGTTTTGTGCAAAAATTCAGTCTCATCAGTCAACAGGGTAA 897 55.07 MELGLSLGDAPKPFRFADKQPPPPHRRDSELCFDLSIGRPVAGVKAHDGEKPNRREEDSDGNEDPPVQLDLLPHHPVPRTLTNPYQGFPWPSSENDDGEDRAASANSAASSFPMEFGLYGGGGNGGCRRDQVESEEESGSARKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLQKELQELRALKSTNSFYTHSPATTLTMCPSCEKVTTSTATATAAISKRSGFGIGGRGGSSSPSLPFCAKIQSHQSTG 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38253639 38255784 + Sed0013910.1 Sed09g1437 726201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1437 298 SUPERFAMILY Homeodomain-like 135 199 IPR009057 -
Sed09g1437 298 MobiDBLite consensus disorder prediction 272 298 - -
Sed09g1437 298 MobiDBLite consensus disorder prediction 19 33 - -
Sed09g1437 298 Coils Coil 211 234 - -
Sed09g1437 298 Gene3D - 146 196 - -
Sed09g1437 298 ProSiteProfiles 'Homeobox' domain profile. 138 198 IPR001356 GO:0003677(InterPro)
Sed09g1437 298 CDD homeodomain 142 199 IPR001356 GO:0003677(InterPro)
Sed09g1437 298 SMART HOX_1 140 202 IPR001356 GO:0003677(InterPro)
Sed09g1437 298 MobiDBLite consensus disorder prediction 44 62 - -
Sed09g1437 298 SMART halz 198 241 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed09g1437 298 ProSitePatterns 'Homeobox' domain signature. 173 196 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed09g1437 298 Pfam Homeobox associated leucine zipper 198 232 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed09g1437 298 FunFam Homeobox-leucine zipper protein HAT22 146 192 - -
Sed09g1437 298 MobiDBLite consensus disorder prediction 123 142 - -
Sed09g1437 298 MobiDBLite consensus disorder prediction 1 109 - -
Sed09g1437 298 Pfam Homeodomain 142 196 IPR001356 GO:0003677(InterPro)
Sed09g1437 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 55 262 IPR050762 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1370 Sed-Chr5:26628594 Sed09g1437 Sed-Chr9:38253639 8.70E-52 dispersed
Sed07g0690 Sed-Chr7:5141100 Sed09g1437 Sed-Chr9:38253639 2.80E-62 dispersed
Sed08g0440 Sed-Chr8:2723647 Sed09g1437 Sed-Chr9:38253639 7.50E-40 dispersed
Sed09g1437 Sed-Chr9:38253639 Sed12g1276 Sed-Chr12:9306669 4.10E-62 dispersed
Sed07g0689 Sed-Chr7:5141100 Sed09g1437 Sed-Chr9:38253639 1.70E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39611 PF00046 Homeodomain 1.50E-15 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1437 K09338 - csv:101221600 412.149