Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1494 ATGGAAGGTATCTCGCTTCACGGTACGCTTCACGCCACAATCTACGAAGTCGACAGGTTGCATCACGACGGTGGATCCAACGTTTTCAGCAAGTTAATGCAAAACTTTGGGGAGGCTGTTGGAATTGGCAAAGGAGTTACGAAACTATACGCGACTATAGATTTAGAAAAGGCTAGAGTTGGGAGGACGCGATTATTGGAAGATGAACCCAATAACCCAAAATGGTATGAATCTTTTCACATCTACTGTGCCCATAGGGCAACAAATGTTATCTTCACCGTGAAGGATGATAATCCCATTGGCGCTACCTTGATTGGGCGTGCTTATGTACCTGTGGAAGACATCATAGATGGGGAAGAAGTTGACAGGTGGGTTCCAATTTTAGATGAAGAAAAAAATCCAATTGAAGCAGAATCTAAGATTCACATCAAGCTTCAATACTTCAGTGTTACTGAAGATCGCAATTGGGGTCGTGGTATAAGAAGCCGTAAATTTCCCGGAGTCCCCTACACATATTACTCACAGAGAGAGGGTTGTAAGGTCTCTTTGTATCAAGATGCTCATATCCCTGATAATTTTGTTCCTAATATACCTCTTGCTGGAGGAAAGAGTTATGCTCCCTCCAGATGTTGGGAAGATATTTTTGAGGCCATACAAAATGCAAAACACATGATCTACATCACAGGATGGTCTGTTTATACAGAAATTGCCTTGATAAGAGACTCGAGGAGGCCAAAGCCCGGAGGAGACACGATGCTAGGTGAGCTGCTTAAGAAGAAAGCAAGTGAAGGCGTCAGAGTTCTTATGCTTGTATGGGATGACAGAACATCGGTCGGGTTACTAAAAAAGGATGGTCTGATGGCTACTCATGATGAAGAAACAGAACTTTTCTTTCGAGACACTGATGTGCATTGTGTCTTATGCCCTCGTAATCCTGACAATGGTGGAAGCATTGTTCAAGATCTACAAATCTCTACCATGTTCACTCATCATCAGAAGATTGTTGTTGTAGATAGCCCAATGCCAAGCGGAGATTCGGAAAAGAGGAGAATTGTGAGTTTCGTTGGCGGCCTTGATCTCTGTGATGGCAGGTACGACACACCCTTTCATTCCCTTTTCAGGACATTGGATACCGCACACCACGACGATTTCCATCAACCAAATTTTCCTGGTGCGTTAATAACAAAAGGTGGTCCAAGGGAACCGTGGCACGACATCCATTCCCGACTTGAAGGCCCTATTGCCTGGGATGTCTTATTCAATTTTGAGCAAAGGTGGAAGAAACAAGGAGGGAAGGATGTACTAGTGCAGCTTCGAGAGCTTGATGAAATAATCATTCCTCCATCTCCTGTTATGTACCCAGATGACCATGATACCTGGAATGTTCAATTGTTTAGATCTATAGATGGTGGAGCAGCTTTTGGCTTCCCCGAGACCCCCGAAGGTGCTGCTAAAGCTGGGCTAGTCAGCGGGAAAGACAATATTATTGATCGAAGCATTCAAGACGCTTACATTAATGCTATCCGACGGGCAAAGAATTTCATTTATATCGAAAACCAATATTTCCTTGGAAGTTGTTTTGGATGGTCTCCTGATGATATCAAGCCTGAAGATATTGGTGCCTTGCATTGTATCCCAAGAGAGCTTTCCCTTAAGATTGTAAGCAAGATTGCAGCAGGAGAAAGGTTCACTGTCTATGTAGTTGTCCCAATGTGGCCAGAAGGAATACCCGAAAGCGGATCGGTTCAGGCAATATTAGATTGGCAGAGGAGGACATTTGAAATGATGTATAAAGACGTGATCGAGGCTCTTCGGGAACAAGGTATCGAGGAAGACCCGCGCAACTACTTGACATTCTTCTGTCTTGGCAACCGAGAAGTCAAGAGGTCCGGAGAATATGAACCTTCAGAAGCACCAGACGAGGATTCTGATTATTTGAGAGCTCAACAGGCGAGACGCTTCATGATTTATGTCCACACCAAGATGATGATTGTTGATGATGAGTACATAATTGTTGGATCGGCCAATATCAACCAGAGATCCATGGATGGTGCAAGGGACTCCGAGATCGCTATGGGCGCTTATCAGCCGTATCATCTATCAACCCATGAACCTGCACGTGGTCAAGTTCACGGATTCCGTTTGTCATTGTGGTATGAACATCTCGGTATGCTTGACGAAACTTTCCTTCAGCCCGAAAGCGAAGAATGTGTTGCAAAAGTTAACCGAATTGCTGATAAATATTGGGGTCTGTATTCAAGTGAGGAACTTGAGCGAGACTTGCCTGGTCACCTCCTCCGGTATCCCGTCGGCATAAGCAGTGAAGGAGATGTCACAGAGCTCCCAGGATTCGAGTTCTTCCCCGACACCAAAGCTCGTGTACTCGGAACCAAATCGGACTACCTTCCTCCTATCCTCACAACTTAG 2427 44.83 MEGISLHGTLHATIYEVDRLHHDGGSNVFSKLMQNFGEAVGIGKGVTKLYATIDLEKARVGRTRLLEDEPNNPKWYESFHIYCAHRATNVIFTVKDDNPIGATLIGRAYVPVEDIIDGEEVDRWVPILDEEKNPIEAESKIHIKLQYFSVTEDRNWGRGIRSRKFPGVPYTYYSQREGCKVSLYQDAHIPDNFVPNIPLAGGKSYAPSRCWEDIFEAIQNAKHMIYITGWSVYTEIALIRDSRRPKPGGDTMLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETELFFRDTDVHCVLCPRNPDNGGSIVQDLQISTMFTHHQKIVVVDSPMPSGDSEKRRIVSFVGGLDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGALITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDVLVQLRELDEIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEGAAKAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFGWSPDDIKPEDIGALHCIPRELSLKIVSKIAAGERFTVYVVVPMWPEGIPESGSVQAILDWQRRTFEMMYKDVIEALREQGIEEDPRNYLTFFCLGNREVKRSGEYEPSEAPDEDSDYLRAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLSTHEPARGQVHGFRLSLWYEHLGMLDETFLQPESEECVAKVNRIADKYWGLYSSEELERDLPGHLLRYPVGISSEGDVTELPGFEFFPDTKARVLGTKSDYLPPILTT 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38679941 38685535 - Sed0026740.1 Sed09g1494 726258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1494 808 Pfam Phospholipase D C terminal 726 798 IPR024632 -
Sed09g1494 808 SMART pld_4 326 364 IPR001736 GO:0003824(InterPro)
Sed09g1494 808 SMART pld_4 654 681 IPR001736 GO:0003824(InterPro)
Sed09g1494 808 SUPERFAMILY Phospholipase D/nuclease 151 440 - -
Sed09g1494 808 CDD C2_plant_PLD 6 148 - -
Sed09g1494 808 Gene3D Endonuclease Chain A 482 698 - -
Sed09g1494 808 PIRSF PLD_plant 1 808 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Sed09g1494 808 Gene3D C2 domain 7 157 IPR035892 -
Sed09g1494 808 SMART C2_3c 9 124 IPR000008 -
Sed09g1494 808 Pfam C2 domain 44 126 IPR000008 -
Sed09g1494 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 364 IPR001736 GO:0003824(InterPro)
Sed09g1494 808 SUPERFAMILY Phospholipase D/nuclease 447 738 - -
Sed09g1494 808 CDD PLDc_pPLDalpha_2 492 701 - -
Sed09g1494 808 FunFam Phospholipase D delta 201 444 - -
Sed09g1494 808 Gene3D Endonuclease Chain A 200 442 - -
Sed09g1494 808 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Sed09g1494 808 Pfam Phospholipase D Active site motif 656 681 IPR001736 GO:0003824(InterPro)
Sed09g1494 808 Pfam Phospholipase D Active site motif 327 364 IPR001736 GO:0003824(InterPro)
Sed09g1494 808 PANTHER PHOSPHOLIPASE D 11 795 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Sed09g1494 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824(InterPro)
Sed09g1494 808 FunFam Phospholipase D 467 700 - -
Sed09g1494 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1494 Sed-Chr9:38679941 Sed11g1112 Sed-Chr11:26832157 5.00E-195 dispersed
Sed01g1374 Sed-Chr1:10215310 Sed09g1494 Sed-Chr9:38679941 0.00E+00 transposed
Sed06g2216 Sed-Chr6:45828442 Sed09g1494 Sed-Chr9:38679941 1.80E-170 transposed
Sed05g1449 Sed-Chr5:28237338 Sed09g1494 Sed-Chr9:38679941 0.00E+00 wgd
Sed07g0780 Sed-Chr7:5807850 Sed09g1494 Sed-Chr9:38679941 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1494 K01115 - csv:101206113 1568.13