Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1502 ATGTATGGGAGAAAAGCTTGTCAGCTGGTGAAAGAGCTAGGGAGCGGCGAGAAAGGGCAGCTAGATCACTTTAATAGCGACCTTTTTGAACAGGTTATTTCCGAATGCGAGCAGCATCATCTTGAGCTTCAATCCTTGTTGAGGAAATTACAGGAAGAAGGATTGGATCTACAGACGACTAAGAATGAAGATCATTTTGGCGCGCTCGTTCACCACCTCGCATTAGTTCGCAATAAACGCTGCCTCATGGCTTATGTGTATAATCGAGCTGAGATTATAAGAAACTTGACATGGAAGATACCTAGGCTTCCACTAGAACTACAAGAGAAGCTCAGCAACTCAGAGGAAGAGTATTTTAAGAACCATTCTACACGTCTAAAACAATACATGTCGAAACTGGAGTTGGATTTGACTGTGGATATGGTGCCACCTAAGGATCCATATATCCAGGTGAGGGTACTCGATGACATCGGTGATGGAATTGTATTGAGTGATGATAAAACAGCAAATTTTGCACTTCATTCCATACATTTTCTTAAACGAACTGATGCTGAGCAATATATCTCACAGGGTTTAATGGAGGAACTTAGAGGCTGA 597 42.04 MYGRKACQLVKELGSGEKGQLDHFNSDLFEQVISECEQHHLELQSLLRKLQEEGLDLQTTKNEDHFGALVHHLALVRNKRCLMAYVYNRAEIIRNLTWKIPRLPLELQEKLSNSEEEYFKNHSTRLKQYMSKLELDLTVDMVPPKDPYIQVRVLDDIGDGIVLSDDKTANFALHSIHFLKRTDAEQYISQGLMEELRG 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38744001 38748046 + Sed0013432.2 Sed09g1502 726266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1502 198 Gene3D - 1 133 - -
Sed09g1502 198 Pfam GINS complex protein helical bundle domain 47 133 IPR021151 -
Sed09g1502 198 CDD GINS_A_psf1 3 135 IPR005339 GO:0000811(InterPro)|GO:0006260(InterPro)
Sed09g1502 198 Coils Coil 33 63 - -
Sed09g1502 198 CDD GINS_B_Psf1 147 196 - -
Sed09g1502 198 SUPERFAMILY GINS helical bundle-like 1 145 IPR036224 -
Sed09g1502 198 PANTHER PARTNER OF SLD5 1 196 IPR005339 GO:0000811(PANTHER)|GO:0000811(InterPro)|GO:0006260(InterPro)|GO:1902983(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1501 Sed-Chr9:38744001 Sed09g1502 Sed-Chr9:38744001 8.40E-112 tandem
Sed09g1502 Sed-Chr9:38744001 Sed09g1503 Sed-Chr9:38744001 8.40E-112 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1502 K10732 - csv:101205409 360.147