Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1503 ATGAAATCCTGCCAAATCCGACCTAATTTTCGTAATTTGTTTCGATTTCTGTACATTTGCGTTGTAATAGCGAATATGTATGGGAGAAAAGCTTGTCAGCTGGTGAAAGAGCTAGGGAGCGGCGAGAAAGGGCAGCTAGATCACTTTAATAGCGACCTTTTTGAACAGGTTATTTCCGAATGCGAGCAGCATCATCTTGAGCTTCAATCCTTGTTGAGGAAATTACAGGAAGAAGGATTGGATCTACAGACGACTAAGAATGAAGATCATTTTGGCGCGCTCGTTCACCACCTCGCATTAGTTCGCAATAAACGCTGCCTCATGGCTTATGTGTATAATCGAGCTGAGATTATAAGAAACTTGACATGGAAGATACCTAGGCTTCCACTAGAACTACAAGAGAAGCTCAGCAACTCAGAGGAAGAGTATTTTAAGAACCATTCTACACGTCTAAAACAATACATGTCGAAACTGGAGTTGGATTTGACTGTGGATATGGTGCCACCTAAGGATCCATATATCCAGGTGAGGGTACTCGATGACATCGGTGATGGAATTGTATTGAGTGATGATAAAACAGCAAATTTTGCACTTCATTCCATACATTTTCTTAAACGAACTGATGCTGAGCAATATATCTCACAGGGTTTAATGGAGGAACTTAGAGGCTGA 672 41.22 MKSCQIRPNFRNLFRFLYICVVIANMYGRKACQLVKELGSGEKGQLDHFNSDLFEQVISECEQHHLELQSLLRKLQEEGLDLQTTKNEDHFGALVHHLALVRNKRCLMAYVYNRAEIIRNLTWKIPRLPLELQEKLSNSEEEYFKNHSTRLKQYMSKLELDLTVDMVPPKDPYIQVRVLDDIGDGIVLSDDKTANFALHSIHFLKRTDAEQYISQGLMEELRG 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38744001 38748046 + Sed0013432.3 Sed09g1503 726267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1503 223 Gene3D - 26 158 - -
Sed09g1503 223 Coils Coil 58 88 - -
Sed09g1503 223 CDD GINS_B_Psf1 172 221 - -
Sed09g1503 223 PANTHER PARTNER OF SLD5 26 221 IPR005339 GO:0000811(PANTHER)|GO:0000811(InterPro)|GO:0006260(InterPro)|GO:1902983(PANTHER)
Sed09g1503 223 SUPERFAMILY GINS helical bundle-like 26 170 IPR036224 -
Sed09g1503 223 CDD GINS_A_psf1 28 160 IPR005339 GO:0000811(InterPro)|GO:0006260(InterPro)
Sed09g1503 223 Pfam GINS complex protein helical bundle domain 73 158 IPR021151 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1501 Sed-Chr9:38744001 Sed09g1503 Sed-Chr9:38744001 8.40E-112 dispersed
Sed09g1502 Sed-Chr9:38744001 Sed09g1503 Sed-Chr9:38744001 8.40E-112 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1503 K10732 - csv:101205409 360.147