Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1531 ATGAGAAAAGAAGAAAATCACATCAGGGCCAACATTGGAGAATTCCCTGGTAGAATTACACGTGCTCGGGCTGCTGCATTTAGTAGTGTATCAGCGCAGCTGCCTCCAAAAGTCCCTGTAAATCAACAACAGAAGCGGGTTGCACGATGCAATCTAAAAAGAGCCGCTTCAGAAGAAAATGACTTCCATTCTATTGCTTCACGACCGTATAAGAGGAGGGCCGTGCTTCAGGATGTCAGCAACATATGCTGTGAACCTTCGTACTCAAAATGTTTTAATGCAGCTAAAATGCAGGCCAATATTAGTAAGCCGGAAACCAGAAACCGTCTCAAGAAGTCAAAAGGAGCCTCATCAGTTGGTGTAGCTAACTCCAAGGTTCCTCTTGACCTTAGAACCAAAGGAGCTTCATCAGTTGGTGTGGCTTACTCCAAGGGTCCTCTTGATCTTAGAACACAAGGTTTACAAGAAAATGTCAAATCAAAAGCTAAGTTGAAAGTTGAACATTCAACTAATTCCGAAAACCACGAGACCTATCATCCGGTAGGTGGTGGTATAAAGGAAGAGGTCACAAGTGATCAACAGGATGATAATTGGAGGTCTCAAAGTCCTTCTGAGTCTCATAACTTTCAAAATAAAGAGAAAGGGTTCCTTCTGGGGACGAGAAGCAACTTGGGCATTACAGACATTGATTGTAATGACAGAGATGCTCAACTGTGCACCGTATATGCTCATGATATCTACAACAATTTACGTGTTGTTGAGCTAACTCGAAGGCCACGTCCCGATTTCATGGAAACAGTGCAGACTGATATTACCCAAAGCATGCGTGGTATATTGGTTGATTGGCTTGTAGAGGTATCGGAGGAATACAAGTTAGTACCAGACACACTGTACCTTACTGTATTTTTCATTGATTGGTTTCTTTCCAAAAATTACATCGAGAGACAAAAGCTTCAACTGCTGGGTATCACTTGCATGTTAATTGCCTCGAAATATGAAGAAATTTGCGCCCCTCGTGTTGAAGACTTTTGTTTCATCACCGACAGCACCTACACGAAAGAGGAGGTATTGATTATGGAAGGTCAAATATTGAAGCATATGGGCTTTCAACTTTCTGCACCAACTGCAAAATCTTTCCTCAGGCGATATGTTCGAGCTGCGCAAACAACATTCAAGACCCCTAGTCTTGAACTTGAGTGCCTCGCCAACTATCTAACCGAACTAACACTGGTCGACTGCGGTTTCTTGAATTTTCTTCCCTCTATTATAGCTGCATCAGCTATCTTTCTTTCCAAATGGACGTTGGATCAGTCGAGTCACCCATGGAATTCAACATTGGAATATTATACCTCGTATAAAGCGTCCGATTTGAAACAAACTGTTCTTGCTTTACAAGATTTACAGTTGAACACCAATGGTTGTCCTCTTAGTTCAATTCGAGTCAAGTATCGACAAGAAAAGTTCAAAGCCGTCGCAACTTTGTCTTCTCCGAAATTACTTGATACGCTATTCCGAACCACGTGTTAG 1527 42.17 MRKEENHIRANIGEFPGRITRARAAAFSSVSAQLPPKVPVNQQQKRVARCNLKRAASEENDFHSIASRPYKRRAVLQDVSNICCEPSYSKCFNAAKMQANISKPETRNRLKKSKGASSVGVANSKVPLDLRTKGASSVGVAYSKGPLDLRTQGLQENVKSKAKLKVEHSTNSENHETYHPVGGGIKEEVTSDQQDDNWRSQSPSESHNFQNKEKGFLLGTRSNLGITDIDCNDRDAQLCTVYAHDIYNNLRVVELTRRPRPDFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFIDWFLSKNYIERQKLQLLGITCMLIASKYEEICAPRVEDFCFITDSTYTKEEVLIMEGQILKHMGFQLSAPTAKSFLRRYVRAAQTTFKTPSLELECLANYLTELTLVDCGFLNFLPSIIAASAIFLSKWTLDQSSHPWNSTLEYYTSYKASDLKQTVLALQDLQLNTNGCPLSSIRVKYRQEKFKAVATLSSPKLLDTLFRTTC 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38921964 38930554 - Sed0006298.2 Sed09g1531 726295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1531 508 FunFam Cyclin A1 361 493 - -
Sed09g1531 508 Gene3D - 245 493 - -
Sed09g1531 508 Pfam Cyclin, N-terminal domain 245 372 IPR006671 -
Sed09g1531 508 SMART cyclin_7 378 466 IPR013763 -
Sed09g1531 508 SMART cyclin_7 281 365 IPR013763 -
Sed09g1531 508 SUPERFAMILY Cyclin-like 235 371 IPR036915 -
Sed09g1531 508 CDD CYCLIN_AtCycA-like_rpt2 374 488 - -
Sed09g1531 508 PIRSF Cyclin_A_B_D_E 30 506 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed09g1531 508 FunFam Mitotic cyclin 6 259 359 - -
Sed09g1531 508 PANTHER CYCLINS 227 484 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed09g1531 508 Gene3D - 259 372 - -
Sed09g1531 508 SUPERFAMILY Cyclin-like 374 499 IPR036915 -
Sed09g1531 508 MobiDBLite consensus disorder prediction 195 212 - -
Sed09g1531 508 CDD CYCLIN_AtCycA_like_rpt1 235 370 - -
Sed09g1531 508 Pfam Cyclin, C-terminal domain 374 496 IPR004367 -
Sed09g1531 508 MobiDBLite consensus disorder prediction 165 212 - -
Sed09g1531 508 SMART Cyclin_C_2 374 497 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1519 Sed-Chr7:11915751 Sed09g1531 Sed-Chr9:38921964 1.10E-229 dispersed
Sed09g1531 Sed-Chr9:38921964 Sed13g2048 Sed-Chr13:25269435 2.10E-106 dispersed
Sed09g1531 Sed-Chr9:38921964 Sed09g1532 Sed-Chr9:38922285 1.40E-280 tandem
Sed07g1518 Sed-Chr7:11915751 Sed09g1531 Sed-Chr9:38921964 1.10E-229 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1531 K06627 - csv:101222299 842.417