Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1544 ATGGAGATCAAAGACAAGAAGAGAATTTCAAAAACTATCTTCTCTCCATTAATGCCATCTCCTTTGATGGCTTTCCTCCTGGTTTTCCTCTGTTATGGCCCGATCGCCGCGTTCGCGGTCGGCCCGGGCGCTGCCTTCATCCCGAAAGATAACTTTCTCATTGATTGTGGTGCCAATAAGGAACTTGGTGCACTCCCTGATGGAAGAGTGTTCAAAACTGATGAGCAATCCAAGCAGTTCCTTGATACTAAAGACGAAATCGTAGTCGTCGCACCGCCCGAGACGAAGACGTCGTCCCCGGTCGATTTGACTGCGAGAGTGTTCCTCCAAGAAGCTTCTTACATTTTTCAGATGACCGAGCCCGGATGGCATTGGCTTCGCCTACATTTCTTGCCTATTAAAACCAAAGACCATGATCTCGTACAGGCTAAATTTTCAGTAACTACTGAAAAATATGTGTTGCTTCATAGCTTCAACATCAACAATGACTCCAAAGATGTTGTTAAGGAGTTTCTGATTAATATTGATGAACCAAAACTCTCTATCAAATTCTTACCAATGAAGAATTCGATCGCATTCGTCAACGCCATCGAGGTCGTCTCCGCTCCGTTGGAGTTGATCGCCGACTCGAACATGGAGCTGTCCCCGGTCGGGATGATCGATGGTCTTTCGAACTATGCATTTCAGACATTGTTTAGAATAAACATGGGAGGACCTATAATTACTCCAAGAAATGACACTCTTGGAAGAACATGGGAAATTGATGAAGCTTATAGAACACCACTTGCTTCTGGTAAAAATGTGATTGCTGAGACAAATAGTGTCAAATATCAAGTGGGAAAGAAAGAAAAAGGCATGTTAATTGCTCCTCCAAGTGTGTATGCAAGTGCTGTTAAAATGGGAGAGGCTCAAGTTAATGTACCAAATTTCAATGTCACATGGAAATTTCAGGCAGATCCTTCATTTGGGTACCTAATTAGATTTCATTTCTGTGATATAATCAGCAAAAATCTCAATGAACTTTATTTCAATGTTTATGTAAATGGGAAACCTGCAATAACCAATTTGGATTTGTCACATAAGCTAGATGCTTTGGCAACTGCATATTACAAGGATGTTGTGGTTAATGCTTCCTTGGTTGTAGATGGATTGAAGATTCAAATTAGTCCGGCGAACGTTGAGACGGGCGAATTGGAAGCCATACTCAATGGGTTGGAGATATTGAAGATAAGTAATTCTGTTGATAGTTTGGATGGAGAGTTTGGAGTGGATGGTAAGTCTGCGAATGGATCGAACCGTGGTACGGTTGCGGCAGTTGGGTTCGCGATGATGTTCGGAGCGTTTGTCGGGCTTGGTGCCATGGTGATGAAATGGCATAAGAGGCCTCAAGATTGGCAGAAGAGGAATAGTTTCTCTTCATGGTTGCTGCCTGTTCATGCTGGTGATTCAAGCTTTATGTCGAGCAAGTCCAAACAACACTCCTCAAGCTTAGGCCTTGGCAGGTTTTTCAGTTTGGCAGAGTTGCAAGAAGCAACCAAGAATTTTGATTCCAATTCAATAATTGGTGTTGGTGGATTTGGAAATGTGTACCTTGGATTGATTGATGAAGGGACTAAAGTAGCAGTTAAGAGAGGAAATCCGCAATCCGAACAAGGCATAACCGAATTCGAAACGGAGATTCAAATGCTTTCGAAACTCAGACACAGGCATTTGGTTTCTTTGATTGGATATTGTGATGAGAATTCTGAAATGATATTGGTATATGAGTACATGTCAAATGGTCCCTTCAGAGATCACTTGTATGGAAAGGAGTCAAAGGACTTGGCTCCATTGTCATGGAAGCAAAGGCTAGAGATTTGCATCGGATCGGCTCGAGGTCTTCATTACCTTCATACAGGAACAGCACAAGGAATCATTCATCGTGACGTGAAAACAACCAACATCTTGCTCGACGAAAACTTCACCGCGAAAGTTGCCGATTTCGGGCTGTCGAAAGATGCTCCAATGGGGCAGGGACATGTAAGTACAGCAGTGAAGGGTAGTTTTGGATATTTGGATCCAGAGTACTTTAGAAGGCAACAATTAACAGAAAAATCAGATGTTTATTCTTTTGGAGTTGTTCTTTTAGAGGCTTTATGTGCAAGAGCAGCAATTAATCCATCATTGACAAGAGAACAAGTAAACTTAGCTGATTGGGCAATGCAAAATAAAAGAAAAGGAACTTTGGAAAAAATCATAGATCCATATTTAGTTGGATCCATAAATCCTGAATCCATGAAAAAATTGGCTGAAGCAGCTGAGAAATGTCTCTCTGAACATGGTGTTGATAGGCCAAGCATGGGGGATGTGTTGTGGAATTTGGAATATGCATTACAACTTCAAGAATCATTCACACAAGGCAAGACTGAGGAAGAAAGTAAAGCCGTAGGCACCGAAGCTGTCGCCGCGGTTACGCCTATCCCTGTCGATGCTTCGACGGATGCACCGAAGCCCGACAACCGCCCTGTCGTGCAGCCGGAACAGAATAGGCGACCGGGCGAGGTCCAAACCATTGATGATCACTCAGGAAGTGCAATGTTTGCTCATTTTTCTAATCTCAATGGTAGATGA 2610 42.84 MEIKDKKRISKTIFSPLMPSPLMAFLLVFLCYGPIAAFAVGPGAAFIPKDNFLIDCGANKELGALPDGRVFKTDEQSKQFLDTKDEIVVVAPPETKTSSPVDLTARVFLQEASYIFQMTEPGWHWLRLHFLPIKTKDHDLVQAKFSVTTEKYVLLHSFNINNDSKDVVKEFLINIDEPKLSIKFLPMKNSIAFVNAIEVVSAPLELIADSNMELSPVGMIDGLSNYAFQTLFRINMGGPIITPRNDTLGRTWEIDEAYRTPLASGKNVIAETNSVKYQVGKKEKGMLIAPPSVYASAVKMGEAQVNVPNFNVTWKFQADPSFGYLIRFHFCDIISKNLNELYFNVYVNGKPAITNLDLSHKLDALATAYYKDVVVNASLVVDGLKIQISPANVETGELEAILNGLEILKISNSVDSLDGEFGVDGKSANGSNRGTVAAVGFAMMFGAFVGLGAMVMKWHKRPQDWQKRNSFSSWLLPVHAGDSSFMSSKSKQHSSSLGLGRFFSLAELQEATKNFDSNSIIGVGGFGNVYLGLIDEGTKVAVKRGNPQSEQGITEFETEIQMLSKLRHRHLVSLIGYCDENSEMILVYEYMSNGPFRDHLYGKESKDLAPLSWKQRLEICIGSARGLHYLHTGTAQGIIHRDVKTTNILLDENFTAKVADFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARAAINPSLTREQVNLADWAMQNKRKGTLEKIIDPYLVGSINPESMKKLAEAAEKCLSEHGVDRPSMGDVLWNLEYALQLQESFTQGKTEEESKAVGTEAVAAVTPIPVDASTDAPKPDNRPVVQPEQNRRPGEVQTIDDHSGSAMFAHFSNLNGR 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38981033 38983642 - Sed0006517.1 Sed09g1544 726308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1544 869 SUPERFAMILY Protein kinase-like (PK-like) 493 788 IPR011009 -
Sed09g1544 869 Gene3D Phosphorylase Kinase; domain 1 481 590 - -
Sed09g1544 869 Gene3D Transferase(Phosphotransferase) domain 1 591 816 - -
Sed09g1544 869 MobiDBLite consensus disorder prediction 820 851 - -
Sed09g1544 869 FunFam Receptor-like protein kinase FERONIA 591 808 - -
Sed09g1544 869 FunFam Receptor-like protein kinase FERONIA 227 412 - -
Sed09g1544 869 Pfam Protein tyrosine and serine/threonine kinase 519 784 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g1544 869 CDD STKc_IRAK 521 788 - -
Sed09g1544 869 Gene3D - 226 412 - -
Sed09g1544 869 Gene3D - 51 203 - -
Sed09g1544 869 SMART serkin_6 515 790 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1544 869 ProSiteProfiles Protein kinase domain profile. 515 790 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1544 869 FunFam receptor-like protein kinase FERONIA 480 590 - -
Sed09g1544 869 FunFam Putative receptor-like protein kinase 51 203 - -
Sed09g1544 869 Pfam Malectin-like domain 54 409 IPR024788 -
Sed09g1544 869 ProSitePatterns Protein kinases ATP-binding region signature. 521 543 IPR017441 GO:0005524(InterPro)
Sed09g1544 869 PANTHER OS07G0166700 PROTEIN 503 795 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Sed09g1544 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0239 Sed-Chr8:1358785 Sed09g1544 Sed-Chr9:38981033 5.50E-248 dispersed
Sed09g1544 Sed-Chr9:38981033 Sed12g1972 Sed-Chr12:30709941 2.70E-231 dispersed
Sed04g2900 Sed-Chr4:40671278 Sed09g1544 Sed-Chr9:38981033 1.30E-59 transposed
Sed07g1512 Sed-Chr7:11812075 Sed09g1544 Sed-Chr9:38981033 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79781 PF12819 Malectin_like 2.80E-38 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1544 - - - 0.0