Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1566 ATGGATTTCTGGCCAGAGTTCCTTGCAAACAGTTGGGGTAGAGAATTTGTCGCCGGGGGATTCGGTGGCATCGCCGGCATAGTCTCCGGCTACCCTCTCGACACTCTTCGAGTCAGGCAACAACAATCTGTTTCTGGTTCTGATTCTGCTTTGAAAATCTTTCGCAATATTGTTTCTAGTGATGGCCCTGCTGGTCTTTACAGAGGCATGGCTGCTCCTTTGGCCTCTGTCACCTTCCAGAACGCGGCCGTGTTTCAGATCTACGCCATTCTTTCTCAGGCATTCAACTCGGGTGGTGGTGACCCTCCAAGCTATAAGGCTGCAGCATTTGGAGGATTCGGCACCGGAGCTCTACAAAGCTTCATTTTGTCGCCGGTCGAATTGGTGAAGATCCGCCTGCAATTGCTAAGTTCAAACCATTCACAGTCAAATCAACAACTAAAATCTCATTCTCACAAAGGACCTGTAAGTGTAGCTAAAAGCATCATCAAAACAGAAGGAATGAGAGGGATTTACAGAGGACTTACCATAACAATGCTGAGAGATGCTCCTGCACATGGTATCTATTTCTGGACATATGAGTGCATGAGAGAGCAGTTTCATCCGGGCTGCCGAACGACCGGCGAGGAGAGCGTCGGCACAATGCTGGTCGCGGGAGGGCTCGCGGGAGTTGCGAGCTGGGTTTTCTGTTATCCCTTGGATGTGTTGAAGACAAGAATTCAAGGTCAGACACAAAGCTCATCTCGAAAATACAATGGAATTGTTGATTGTCTTGCCAAGAGTGTGAGAGAAGACGGCTACAGAGTTCTGTGGCGAGGGCTCGAGACTGCGGTTGCTAGAGCATTCGTTGTTAATGGCGCCATTTTTGCTGCTTATGAGACAACTTTGAGGTGTTTGTTTAGCAATGGAAGCAATCAGACACAGCAATGA 930 48.6 MDFWPEFLANSWGREFVAGGFGGIAGIVSGYPLDTLRVRQQQSVSGSDSALKIFRNIVSSDGPAGLYRGMAAPLASVTFQNAAVFQIYAILSQAFNSGGGDPPSYKAAAFGGFGTGALQSFILSPVELVKIRLQLLSSNHSQSNQQLKSHSHKGPVSVAKSIIKTEGMRGIYRGLTITMLRDAPAHGIYFWTYECMREQFHPGCRTTGEESVGTMLVAGGLAGVASWVFCYPLDVLKTRIQGQTQSSSRKYNGIVDCLAKSVREDGYRVLWRGLETAVARAFVVNGAIFAAYETTLRCLFSNGSNQTQQ 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39287092 39289184 + Sed0016744.2 Sed09g1566 726330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1566 309 Pfam Mitochondrial carrier protein 210 300 IPR018108 -
Sed09g1566 309 Pfam Mitochondrial carrier protein 11 96 IPR018108 -
Sed09g1566 309 Pfam Mitochondrial carrier protein 108 200 IPR018108 -
Sed09g1566 309 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 9 299 IPR050567 GO:0006810(PANTHER)|GO:0022857(PANTHER)
Sed09g1566 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 210 298 IPR018108 -
Sed09g1566 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 94 IPR018108 -
Sed09g1566 309 Gene3D Mitochondrial carrier domain 4 113 IPR023395 -
Sed09g1566 309 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085(InterPro)
Sed09g1566 309 PRINTS Mitochondrial carrier protein signature 219 241 IPR002067 GO:0055085(InterPro)
Sed09g1566 309 PRINTS Mitochondrial carrier protein signature 172 190 IPR002067 GO:0055085(InterPro)
Sed09g1566 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 199 IPR018108 -
Sed09g1566 309 SUPERFAMILY Mitochondrial carrier 11 293 IPR023395 -
Sed09g1566 309 Gene3D Mitochondrial carrier domain 114 308 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2254 Sed-Chr8:36188797 Sed09g1566 Sed-Chr9:39287092 7.20E-14 dispersed
Sed08g2255 Sed-Chr8:36188797 Sed09g1566 Sed-Chr9:39287092 5.50E-14 dispersed
Sed09g1566 Sed-Chr9:39287092 Sed12g1999 Sed-Chr12:30922909 2.80E-21 dispersed
Sed09g1566 Sed-Chr9:39287092 Sed09g1567 Sed-Chr9:39287303 5.80E-136 tandem
Sed06g2154 Sed-Chr6:45337744 Sed09g1566 Sed-Chr9:39287092 2.20E-119 wgd
Sed07g1470 Sed-Chr7:11345258 Sed09g1566 Sed-Chr9:39287092 5.00E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1566 K15109 - csv:101222165 508.834