Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1577 ATGGCCGTCGCCATGTCCGGCAACCACCAACCTCGCCGTGTTATCATGAACGTTCCTTCTTCTCCGGCTCTCTCTCTCACGCTTGCTGGAGGTTTTGGCAATGCGGCGGCGGCGAGGAGAGACGATAGCTGCAGTGACAACTCCGATCCGGCGGGGTCGAGATCGGCGGAGGATTTGTGCATCGATCTCGACGATGAGGATGAAGATAAACTACAAGGAAATAGGAAAAAGAGAAAGAATCGGCATAGTTCAGAGCAAATCAGAGAAATGGAGAAAGTGTTTAAAGAATCGCCTCATCCAGATGAGAAACAGAGGCAGTTACTCAGTGAGAAACTCGGTCTTCATTCCAAGCAAATCAAATTCTGGTTTCAGAATCGTAGAACTCAAATCAAGGCCAGTCTCGAGCGACAGGAAATGGAGAAATTGCGCAAGGAAAATCAATCCATGAAGGAAATGCTCGACAAATCCTCTTGTCCTAAATGTTGCTCTTCAGCTACATCAATCTTCAGTTCTGAACAACAACAATCGCAATTAGTTACTGAAATTGTTCGACTCAAAGCCGAGCTCGAGAGATTACGAGCGGCTCTGGAGGAATACGGTCCGGCTAGGGCGTCCACGTCGCGATCGAACGAGGAGGGGATTTTCGGAGCGGAGAAAGCTAGGGTTATGGAGATGGCGAATCGAGCGGTTGAGGAGGTTGTGAAAATGGCGGATTCCGGCGAGCCGCTGTGGGTTCGGAGCTTCGACGCCGGTCGAGAACTGCTGAATTACGACGAGTATGTGAAGGAATTCGGCGCCGGCGACGAGCGGCCGGGAAGAAAAATCGAAGCGTCGAGAGATTCCTGCGTGTTGTTCGTCGATCTTCAGCAGTTGGTTCAGAGCTTCATGGATGTGGTTCAGTGGAAAGAAATGTTCCCGTCGATAATCTCGAAGGCGTCGACTGTGGAGGTCGTCTGCAATGGCGACGGGGCCACCTGTAATGGCGCAGTTCAACTGATGTATGCCGAGCTTCAAATGCTAACTCCCAGCATCCCTCCCCGAGAGGTGCATTTCATTCGAAGTTGCAAGCAAATAAGCCCTCAAAAGTGGGTCATTGCCGATGTTTCCGTCTCGAAACTCGGCGATGGTATCGACTCATCATCATCCTCTTCCTCCCTTTGCGCCAAACGCCCATCCGGTTGCATCATTCACGACACTTCTAACGGCCGTTGTAAGGTCACTTGGATAGAGCATTGGAAATGCCCAAAGATCGGGCTTCGCACGATATATCGTACCGTTATTGACAACGGTTCGATGTTCGGGGCGAGGCATTGGATAGCGACGCTACAAATCCATTGTGAGCGGCAAGTTTTCTTCATGGCTACCAACGTTCCTATGAAGGATTCCACTGGAATTACCACAACTGGTGGAAGAAAAAGCGTTTTTCAATTGGCACAAAGAATGACGTCTGGTATTTATCAATCCATTGGGGCTTCGAGCAGCCATACGTGGGCCAAGGTCCAGAGCAAAATAGGCGAAAACATTAGGGTTGCTTCAAGGAAGAACTTGAATGATCCACGAGAACCTCTTGGTTTGATCTTGTGTGCAGCTGCTTCTGTCTGGCTACCTGTTTCACCTAAAGTCTTGTTTGAATTCTTGATCGACGAGTCTCGACGAATCGAGTGGGATGTGATGTTAAGCAGTCCAGTGGAAACAGTAGCAACCTTTGCCAAAGGACAAAATCGAGGCAATGCTGTAACCATCCAAGCAACAAAATCAGATGAAACCAACATGTGGATTCTACAAGACAGTCTAACAAATGAATATGAATCGACAGTGGTCTATGCTCAAGTTGACATTACGAGCATGCGGACGGTGATGGCAGGGTCCGACCCGAGCAGCATCACAATGTTACCGATGGGGTTTTCGATCCTCCCGGATGGACACTCGCCGAGGCCATCGATTATCAGCTTGAACACGGAGGAGAATGGAAGCGAAGGAGGTTCGTTGCTAACAATAGCGACTCAAATCTCAGTAAGTTCCTCCCCCACTGCTGAAACTTCGTCGCAGTCTGTTGAGTACGTTAAAAATTATATATCACATACGTTACAAAATATTAAAGCAAAGCTACAAGGCGAGGATGATTAA 2127 48.75 MAVAMSGNHQPRRVIMNVPSSPALSLTLAGGFGNAAAARRDDSCSDNSDPAGSRSAEDLCIDLDDEDEDKLQGNRKKRKNRHSSEQIREMEKVFKESPHPDEKQRQLLSEKLGLHSKQIKFWFQNRRTQIKASLERQEMEKLRKENQSMKEMLDKSSCPKCCSSATSIFSSEQQQSQLVTEIVRLKAELERLRAALEEYGPARASTSRSNEEGIFGAEKARVMEMANRAVEEVVKMADSGEPLWVRSFDAGRELLNYDEYVKEFGAGDERPGRKIEASRDSCVLFVDLQQLVQSFMDVVQWKEMFPSIISKASTVEVVCNGDGATCNGAVQLMYAELQMLTPSIPPREVHFIRSCKQISPQKWVIADVSVSKLGDGIDSSSSSSSLCAKRPSGCIIHDTSNGRCKVTWIEHWKCPKIGLRTIYRTVIDNGSMFGARHWIATLQIHCERQVFFMATNVPMKDSTGITTTGGRKSVFQLAQRMTSGIYQSIGASSSHTWAKVQSKIGENIRVASRKNLNDPREPLGLILCAAASVWLPVSPKVLFEFLIDESRRIEWDVMLSSPVETVATFAKGQNRGNAVTIQATKSDETNMWILQDSLTNEYESTVVYAQVDITSMRTVMAGSDPSSITMLPMGFSILPDGHSPRPSIISLNTEENGSEGGSLLTIATQISVSSSPTAETSSQSVEYVKNYISHTLQNIKAKLQGEDD 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39336227 39344206 + Sed0004043.1 Sed09g1577 726341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1577 708 Coils Coil 175 195 - -
Sed09g1577 708 SUPERFAMILY Bet v1-like 491 699 - -
Sed09g1577 708 MobiDBLite consensus disorder prediction 35 86 - -
Sed09g1577 708 Gene3D - 47 133 - -
Sed09g1577 708 Coils Coil 125 152 - -
Sed09g1577 708 SMART HOX_1 75 137 IPR001356 GO:0003677(InterPro)
Sed09g1577 708 SUPERFAMILY Homeodomain-like 67 131 IPR009057 -
Sed09g1577 708 ProSiteProfiles 'Homeobox' domain profile. 73 133 IPR001356 GO:0003677(InterPro)
Sed09g1577 708 CDD START_ArGLABRA2_like 219 447 - -
Sed09g1577 708 SUPERFAMILY Bet v1-like 223 448 - -
Sed09g1577 708 FunFam Homeobox-leucine zipper protein HDG1 62 149 - -
Sed09g1577 708 CDD homeodomain 76 131 IPR001356 GO:0003677(InterPro)
Sed09g1577 708 ProSitePatterns 'Homeobox' domain signature. 108 131 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed09g1577 708 Gene3D - 225 430 IPR023393 -
Sed09g1577 708 SMART START_1 224 448 IPR002913 GO:0008289(InterPro)
Sed09g1577 708 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 67 704 IPR042160 -
Sed09g1577 708 Pfam Homeodomain 76 131 IPR001356 GO:0003677(InterPro)
Sed09g1577 708 Pfam START domain 225 448 IPR002913 GO:0008289(InterPro)
Sed09g1577 708 ProSiteProfiles START domain profile. 215 451 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2158 Sed-Chr6:45362581 Sed09g1577 Sed-Chr9:39336227 2.70E-187 dispersed
Sed09g1577 Sed-Chr9:39336227 Sed09g1579 Sed-Chr9:39336503 0.00E+00 dispersed
Sed09g1577 Sed-Chr9:39336227 Sed09g1578 Sed-Chr9:39336227 4.10E-262 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39619 PF01852 START 1.30E-43 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1577 K09338 - csv:101218545 987.252