Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1579 ATGGAGAAAGTGTTTAAAGAATCGCCTCATCCAGATGAGAAACAGAGGCAGTTACTCAGTGAGAAACTCGGTCTTCATTCCAAGCAAATCAAATTCTGGTTTCAGAATCGTAGAACTCAAATCAAGGCCAGTCTCGAGCGACAGGAAATGGAGAAATTGCGCAAGGAAAATCAATCCATGAAGGAAATGCTCGACAAATCCTCTTGTCCTAAATGTTGCTCTTCAGCTACATCAATCTTCAGTTCTGAACAACAACAATCGCAATTAGTTACTGAAATTGTTCGACTCAAAGCCGAGCTCGAGAGATTACGAGCGGCTCTGGAGGAATACGGTCCGGCTAGGGCGTCCACGTCGCGATCGAACGAGGAGGGGATTTTCGGAGCGGAGAAAGCTAGGGTTATGGAGATGGCGAATCGAGCGGTTGAGGAGGTTGTGAAAATGGCGGATTCCGGCGAGCCGCTGTGGGTTCGGAGCTTCGACGCCGGTCGAGAACTGCTGAATTACGACGAGTATGTGAAGGAATTCGGCGCCGGCGACGAGCGGCCGGGAAGAAAAATCGAAGCGTCGAGAGATTCCTGCGTGTTGTTCGTCGATCTTCAGCAGTTGGTTCAGAGCTTCATGGATGTGGTTCAGTGGAAAGAAATGTTCCCGTCGATAATCTCGAAGGCGTCGACTGTGGAGGTCGTCTGCAATGGCGACGGGGCCACCTGTAATGGCGCAGTTCAACTGATGTATGCCGAGCTTCAAATGCTAACTCCCAGCATCCCTCCCCGAGAGGTGCATTTCATTCGAAGTTGCAAGCAAATAAGCCCTCAAAAGTGGGTCATTGCCGATGTTTCCGTCTCGAAACTCGGCGATGGTATCGACTCATCATCATCCTCTTCCTCCCTTTGCGCCAAACGCCCATCCGGTTGCATCATTCACGACACTTCTAACGGCCGTTGTAAGGTCACTTGGATAGAGCATTGGAAATGCCCAAAGATCGGGCTTCGCACGATATATCGTACCGTTATTGACAACGGTTCGATGTTCGGGGCGAGGCATTGGATAGCGACGCTACAAATCCATTGTGAGCGGCAAGTTTTCTTCATGGCTACCAACGTTCCTATGAAGGATTCCACTGGAATTACCACAACTGGTGGAAGAAAAAGCGTTTTTCAATTGGCACAAAGAATGACGTCTGGTATTTATCAATCCATTGGGGCTTCGAGCAGCCATACGTGGGCCAAGGTCCAGAGCAAAATAGGCGAAAACATTAGGGTTGCTTCAAGGAAGAACTTGAATGATCCACGAGAACCTCTTGGTTTGATCTTGTGTGCAGCTGCTTCTGTCTGGCTACCTGTTTCACCTAAAGTCTTGTTTGAATTCTTGATCGACGAGTCTCGACGAATCGAGTGGGATGTGATGTTAAGCAGTCCAGTGGAAACAGTAGCAACCTTTGCCAAAGGACAAAATCGAGGCAATGCTGTAACCATCCAAGCAACAAAATCAGATGAAACCAACATGTGGATTCTACAAGACAGTCTAACAAATGAATATGAATCGACAGTGGTCTATGCTCAAGTTGACATTACGAGCATGCGGACGGTGATGGCAGGGTCCGACCCGAGCAGCATCACAATGTTACCGATGGGGTTTTCGATCCTCCCGGATGGACACTCGCCGAGGCCATCGATTATCAGCTTGAACACGGAGGAGAATGGAAGCGAAGGAGGTTCGTTGCTAACAATAGCGACTCAAATCTCAGTAAGTTCCTCCCCCACTGCTGAAACTTCGTCGCAGTCTGTTGAGTACGTTAAAAATTATATATCACATACGTTACAAAATATTAAAGCAAAGCTACAAGGCGAGGATGATTAA 1860 48.12 MEKVFKESPHPDEKQRQLLSEKLGLHSKQIKFWFQNRRTQIKASLERQEMEKLRKENQSMKEMLDKSSCPKCCSSATSIFSSEQQQSQLVTEIVRLKAELERLRAALEEYGPARASTSRSNEEGIFGAEKARVMEMANRAVEEVVKMADSGEPLWVRSFDAGRELLNYDEYVKEFGAGDERPGRKIEASRDSCVLFVDLQQLVQSFMDVVQWKEMFPSIISKASTVEVVCNGDGATCNGAVQLMYAELQMLTPSIPPREVHFIRSCKQISPQKWVIADVSVSKLGDGIDSSSSSSSLCAKRPSGCIIHDTSNGRCKVTWIEHWKCPKIGLRTIYRTVIDNGSMFGARHWIATLQIHCERQVFFMATNVPMKDSTGITTTGGRKSVFQLAQRMTSGIYQSIGASSSHTWAKVQSKIGENIRVASRKNLNDPREPLGLILCAAASVWLPVSPKVLFEFLIDESRRIEWDVMLSSPVETVATFAKGQNRGNAVTIQATKSDETNMWILQDSLTNEYESTVVYAQVDITSMRTVMAGSDPSSITMLPMGFSILPDGHSPRPSIISLNTEENGSEGGSLLTIATQISVSSSPTAETSSQSVEYVKNYISHTLQNIKAKLQGEDD 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39336503 39344206 + Sed0004043.2 Sed09g1579 726343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1579 619 Coils Coil 86 106 - -
Sed09g1579 619 SUPERFAMILY Bet v1-like 134 359 - -
Sed09g1579 619 SMART START_1 135 359 IPR002913 GO:0008289(InterPro)
Sed09g1579 619 SUPERFAMILY Homeodomain-like 1 51 IPR009057 -
Sed09g1579 619 Pfam Homeodomain 1 42 IPR001356 GO:0003677(InterPro)
Sed09g1579 619 Pfam START domain 136 359 IPR002913 GO:0008289(InterPro)
Sed09g1579 619 CDD homeodomain 1 42 IPR001356 GO:0003677(InterPro)
Sed09g1579 619 ProSiteProfiles START domain profile. 126 362 IPR002913 GO:0008289(InterPro)
Sed09g1579 619 Gene3D - 136 341 IPR023393 -
Sed09g1579 619 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 615 IPR042160 -
Sed09g1579 619 SMART HOX_1 1 48 IPR001356 GO:0003677(InterPro)
Sed09g1579 619 Gene3D - 1 44 - -
Sed09g1579 619 SUPERFAMILY Bet v1-like 402 610 - -
Sed09g1579 619 ProSitePatterns 'Homeobox' domain signature. 19 42 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed09g1579 619 CDD START_ArGLABRA2_like 130 358 - -
Sed09g1579 619 ProSiteProfiles 'Homeobox' domain profile. 1 44 IPR001356 GO:0003677(InterPro)
Sed09g1579 619 Coils Coil 36 63 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1577 Sed-Chr9:39336227 Sed09g1579 Sed-Chr9:39336503 0.00E+00 dispersed
Sed09g1579 Sed-Chr9:39336503 Sed10g0620 Sed-Chr10:4136562 6.00E-116 dispersed
Sed09g1578 Sed-Chr9:39336227 Sed09g1579 Sed-Chr9:39336503 3.50E-213 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39621 PF01852 START 1.00E-43 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1579 K09338 - csv:101218545 875.159