Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1598 ATGGCTTGGTTCACCATTGGAAGCTTTCAAGATTCTTTAAGCTTGCACTCTTGCAAGGCTTATCTTGCTGAGTTCATCTCCACCTTACTCTTCGTTTTCGCTGGTGTCGGCTCCGCCATCGCCTACGATAAAATAACTGCGTCCGCAGCTCTAGATCCAGCAGGGCTAGTGGCTGTGGCTATATGCCACGGATTTGCTCTGTTTGTTGCGGTCTCGGTAGCGGCTAACATCTCCGGTGGCCATGTGAACCCGGCCGTGACGTTCGGGCTTCTTCTTGGAGACCAAATCAGCCTAATTACCACCATATTTTATTGGATCGCTCAACTTCTTGGCTCCATTGTTGCCTGCTACCTTCTCAAATATGTCACTGGCGGCTTGGCAGTCCCGGTTCACAGCGTGGCGGCCGGCGTCGGGGCGACGGAAGGAGTCGTGACTGAAATTGTCATCACCTTCGGTCTGGTTTACACCGTGTATGCGACGGCGGCCGACCCGAAGAAGGGATCGTTGGGCACAATTGCGCCAATCGCCATTGGTTTCATCGTCGGAGCAAACATCTTGGCGGCCGGACCGTTTTCCGGCGGCTCGATGAACCCGGCCCGGTCCTTTGGACCGGCTGTGGTCAGTGGAGACTTCCACAACAACTGGATTTACTGGGTTGGGCCGCTGGTTGGGGGTGGCTTAGCTGGGCTTATCTACTTTTACGCCTTTATGGCTTATGGGCCCAGCCCAATTCCAACCGATTACTAA 747 54.35 MAWFTIGSFQDSLSLHSCKAYLAEFISTLLFVFAGVGSAIAYDKITASAALDPAGLVAVAICHGFALFVAVSVAANISGGHVNPAVTFGLLLGDQISLITTIFYWIAQLLGSIVACYLLKYVTGGLAVPVHSVAAGVGATEGVVTEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHNNWIYWVGPLVGGGLAGLIYFYAFMAYGPSPIPTDY 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39474023 39475064 + Sed0025639.1 Sed09g1598 726362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1598 248 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed09g1598 248 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Sed09g1598 248 SUPERFAMILY Aquaporin-like 14 243 IPR023271 -
Sed09g1598 248 CDD MIP 19 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed09g1598 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed09g1598 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed09g1598 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed09g1598 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed09g1598 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed09g1598 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed09g1598 248 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed09g1598 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Sed09g1598 248 PANTHER AQUAPORIN-8 5 238 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Sed09g1598 248 FunFam Probable aquaporin TIP1-1 2 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3988 Sed-Chr1:68982161 Sed09g1598 Sed-Chr9:39474023 2.50E-97 dispersed
Sed03g2041 Sed-Chr3:14307620 Sed09g1598 Sed-Chr9:39474023 1.70E-77 dispersed
Sed05g0587 Sed-Chr5:4291848 Sed09g1598 Sed-Chr9:39474023 2.10E-51 dispersed
Sed09g1598 Sed-Chr9:39474023 Sed14g0418 Sed-Chr14:4333918 2.30E-34 dispersed
Sed09g1598 Sed-Chr9:39474023 Sed14g0365 Sed-Chr14:3816260 1.50E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1598 K09873 - csv:101218611 451.825