Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1606 ATGGCTATGTCCTGCAAGGATGGTAACAAACATGCTATTGATAATGGCAAATACGTTCGGTATACACCGGAGCAGGTTGAAGCCCTTGAGCGGTTCTATCACGAATGTCCAAAACCGAGTTCCATTCGTCGTCAACAGCTTATTAGGGAATGCCCCATTCTCTCTAATATTGAGCCTAAGCAAATCAAAGTTTGGTTTCAGAACAGAAGATGTCGTGAAAAACAGAGGAAAGAGGCGTCAAGGCTTCAAGCTGTGAATAGGAAGCTTACGGCCATGAATAAGCTCCTAATGGAGGAGAATGATAGGCTGCAGAAGCAGGTTTCGAATCTGGTGTATGAAAATGGCTATTTCCGCCAGCATACTCAGAGTACGACGCTTGGAGCTAAAGATACAAATTGTGAACCGGTGGTAACTAGCGGTCAACACAATTTGACATCTCAGCATCCTCCAAGGGATGCTAGTCCTGCAGGACTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGTGTAGCTGCACGCGCATGCGGTCTGGTGGGTCTCGAACCTACTAGAGTTGCTGAAATCCTCAAGGATCAGCCGTCGTGGTTTCGCGATTGCCGAGCTGTGGATGTTCTAAATGTGCTGCCAACTGCCAACGGTGGAACCATTGAGCTGCTTTATATGCAGCTCTATGCGCCTACAACATTGGCACCTGCTAGGGACTTCTGGTTGTTACGCTACACTTCTGTTTTGGAAGATGGTAGCCTTGTGATTTGTGAGAAATCACTTAAGAACACCCAAAATGGTCCAACTATGCCTCCAGTGCAGCATTTTGTCAGAGCTGAAATGTTGTCGAGCGGATATTTGATAAGACCATGTGAAGGAGGTGGTTCTATCATTCATATTGTTGATCATATGGACCTGGAGCCATGGAGTGTTCCAGAAGTATTGCGTCCGTTGTATGAATCATCCACTTTTCTTGCTCAAAAGATGACTATGGCGGCTCTACGCCAGTTGAGGCAGATAGCTCATGAAGTTTCTCAGTCGAATGCAACAGGCTGGGGTAGACGCCCTGCAGCCTTACGTGCCCTTGGTCAAAGGTTAACCAGGGGTTTTAACGAGGCACTTAATGGGTTTAATGACGAAGGGTGGTCTGTGATGGGAAATGATGGCATGGATGATGTAACTATTCTCGTAAATTCATCTCCTGAAAAGCTTATGGGATTGAACATTTCTTTTGCAAATGGATTTTCTTCCATAAGTAATGCAGTTTTATGTGCTAGAGCATCAATGTTGTTGCAGAATGTGCCTCCAGCAATTCTTTTGAGGTTCCTGCGGGAACATCGATCTGAATGGGCAGACAACAACATTGATGCTTATTCAGCTGCTGCTGTTAAGGTTGGCCCATGGAGTTTACCAGGGTCCAGAGTTGGAAGTTTTGGGAATCAAGTTATACTTCCACTGGCTCACACCATTGAGCACGAAGAGTTTCTAGAAGTGATTAAACTTGAAGGCATTGGTCATACACCTGAAGATGCAATGATGCCTAGAGAAATGTTTCTTTTGCAACTCTGCAGCGGAATGGATGAAAACGCCATTGGCACTTGTGCTGAGCTCATATTTGCTCCAATCGACGCCTCTTTTGCCGATGACGCCCCTCTCTTACCCTCAGGGTTTCGGATCATTCCACTAGATTCCGGAAAGGAAGCATCCAGCCCGAATCGCACACTCGACCTTGCTTCTGCTCTTGAAATTGGGCCTGCTGGTAACAGAGCACCAAACGACTCCGCAAAGTCTGGTTGTACTAGGTCTGTAATGACGATTGCATTTGAATTCGCATTTGAGAGCCATATGCAAGAACATGTGGCATCAATGGCTCGACAATATGTTCGTAGTATTATATCATCGGTCCAAAGGGTCGCGTTAGCTCTCTCACCTTCTCATTTAAGCTCACATTCCGGACTACGATCTCCCCTTGGTACTCCTGAAGCACAAACACTTGCGCGTTGGATCTGCAACAGTTACCGATGCTACTTAGGGGTGGAACTGTTGAAATCTGGTAATGAAGGAGGAGGAGAAATTGTCCTGAAAACATTGTGGCATCACTCAGATGCAATCATGTGCTGCTCTCTAAAGTCTATGCAGGCATTGCCAGTGTTTACCTTCGCAAATCAGGCCGGCCTCGACATGCTCGAGACTACCTTAGTTGCACTACAAGACATAACATTGGAGAAGATATTCGACGACCATGGAAAAAAGACACTCTGTTCAGAATTTCCACAGATAATGCAACAGGGATTTGCTTGTCTTCAAGGAGGCATATGCCTATCGAGCATGGGCCGACCTGTCTCGTACGAAAGGGCTGTGGCTTGGAAGGTATTGAATGAAGAAGAAAATGCACATTGCATCTGCTTTATGTTTGTGAACTGGTCTTTTGTGTGA 2526 46.04 MAMSCKDGNKHAIDNGKYVRYTPEQVEALERFYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSNLVYENGYFRQHTQSTTLGAKDTNCEPVVTSGQHNLTSQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDQPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICEKSLKNTQNGPTMPPVQHFVRAEMLSSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTFLAQKMTMAALRQLRQIAHEVSQSNATGWGRRPAALRALGQRLTRGFNEALNGFNDEGWSVMGNDGMDDVTILVNSSPEKLMGLNISFANGFSSISNAVLCARASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAVKVGPWSLPGSRVGSFGNQVILPLAHTIEHEEFLEVIKLEGIGHTPEDAMMPREMFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALEIGPAGNRAPNDSAKSGCTRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHSGLRSPLGTPEAQTLARWICNSYRCYLGVELLKSGNEGGGEIVLKTLWHHSDAIMCCSLKSMQALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGKKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFMFVNWSFV 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39547367 39555227 + Sed0017246.2 Sed09g1606 726370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1606 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 10 841 IPR044830 GO:0003700(InterPro)
Sed09g1606 841 Coils Coil 72 113 - -
Sed09g1606 841 CDD homeodomain 17 77 IPR001356 GO:0003677(InterPro)
Sed09g1606 841 Gene3D - 195 380 IPR023393 -
Sed09g1606 841 Pfam MEKHLA domain 694 840 IPR013978 -
Sed09g1606 841 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677(InterPro)
Sed09g1606 841 Pfam Homeodomain 17 75 IPR001356 GO:0003677(InterPro)
Sed09g1606 841 ProSiteProfiles START domain profile. 151 379 IPR002913 GO:0008289(InterPro)
Sed09g1606 841 SMART HOX_1 14 80 IPR001356 GO:0003677(InterPro)
Sed09g1606 841 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Sed09g1606 841 CDD bZIP 69 108 - -
Sed09g1606 841 Gene3D - 9 83 - -
Sed09g1606 841 CDD START_ArGLABRA2_like 155 371 - -
Sed09g1606 841 SMART START_1 160 370 IPR002913 GO:0008289(InterPro)
Sed09g1606 841 SUPERFAMILY Bet v1-like 160 371 - -
Sed09g1606 841 SUPERFAMILY Homeodomain-like 17 80 IPR009057 -
Sed09g1606 841 FunFam homeobox-leucine zipper protein ATHB-15 196 377 - -
Sed09g1606 841 Pfam START domain 161 369 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1429 Sed-Chr7:11037224 Sed09g1606 Sed-Chr9:39547367 0.00E+00 dispersed
Sed09g1606 Sed-Chr9:39547367 Sed12g1391 Sed-Chr12:11247945 0.00E+00 dispersed
Sed09g1605 Sed-Chr9:39547367 Sed09g1606 Sed-Chr9:39547367 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39627 PF01852 START 1.50E-52 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1606 K09338 - csv:101213106 1649.03