Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1609 ATGCCGGTACTGCGTGGAGGTGTGCGCAGGGGCCGGAAAAAGCAGCAGAAAGACGTGTTGAGTCCGATCGAGGCGGAAGGTGAGGCAATTGCGACGAGGACTAGGAGGAGGAAGGCTGCCGCGGCGGTGGAAGTGGTTCCTGGTAATTACGAGAAGCAGTTGCAAGGAGGAAACGATCAGCAGCCGCCGCTGGTTAATGATAAGGTAGCTGTTGTGGTAGCGAATCCGGAAGAACGTCAGGTGTCGAAGGACGGTATTCGAGTCGGAGGTGGAGACGAGTTTGTAGTTGGTGAGGTTGGTGGCGCTGCTGGTGGAGCTGAGAAGGAAGAAACAGGGGAGAAGAAAATGGATGATCACGATAGTAAAGCAGGAAGCAATGTGAAAGCTCAGGCTGTTGAAGAGGAAGGGAACACAGCACCGGTTCCCGAAAAGGTTCAAGTGGGTGGTTCCCCACTTTACAGGATAGATAAAAAGCTTGGTAAAGGTGGATTTGGACAGGTTTATGTAGGACGTCGTGTCTCACCTGTTAATACAAATGAGAGGACTGGCCCTGGTGCTGTGGAGGTGGCTTTGAAATTTGAGCATAGAAGTAGCAAGGGATGTAATTATGGACCACCTTATGAGTGGCAAGTTTACAATACTCTTGGTGGTAGTCATGGTGTACCTCGAGTGCACTACAAGGGCAGACAAGGCGACTACTATATTATGGTTATGGATATGCTGGGGCCAAGCTTATGGGATGTCTGGAATAATAACGCGCATACCATGTCTGTTGAAATGGTTGCATGCATTGCGATTGAAGCAATATCCATTTTGGAAAAGGTGCATTCCCGTGGGTACATTCATGGTGATGTCAAACCTGAAAATTTTCTACTTGGTCCTTCAGGCTCCCCGGATGAGAAAAAGTTGTTTTTGGTTGACCTTGGATTAGCAACTAGATGGCGTGATGCTTCTGGCCAGCATGTTGAATATGACCAGAGACCTGATGTATTCAGAGGAACAGTGCGCTATGCTAGTGTACACGCTCATTTAGGTAGAATCGGTAGCCGGAGAGATGATCTAGAATCTCTTGCCTACACACTGGTTTTTCTTCTTCGAGGTCGTCTGCCATGGCAAGGATATCAGGGAGAGAATAAAGGATTCCTAGTTTGCAAGAAGAAGATGGCTACTTCTCCGGAGACTTTATGTTGCTTTTGTCCGCAGCCCTTCAGACAATTTATTGAATATGTTGTGAACTTGAAGTTTGATGAAGAACCTAACTATGCAAAATATATTTCACTTTTTGATGGAATCATTGGTCTCAATCCTGAAATCAGGCCAATAAACACAGATGGTGCTCAAAAGCTTGTTTGTCAGGTTGGGCAAAAACGAGGCAGATTGACTTTGGAGGAAGAAGACGAAGAACAACCGAAGAAGAAGGTTCGTATGGGCATGCCCGCGACACAATGGATCAGTGTTTACAATGCACGACGGCCTATGAAGCAAAGGTATCACTATAATGTAGCTGATGGAAGGCTTTCTCAGCATATCGAGAAGGGGAACGAAGATGGCTTGTTTATTAGTAGCGTGGCGTCATGTCAAAATTTATGGGCCTTAATCATGGATGCTGGCTCTGGGTTTTCTTCTCAAGTTTATGAACTTTCACCCCATTTTCTTCATAAGGAGTGGATCATGGAGCAATGGGAAAAAAACTATTACATCACTGCAGTAGCTGGAATCGTTAATGGGAGCTCATTGGTTGTAATGTCGAAGGGCACCCAGTACTCGCAACAGTCATACAAAGTCAGTGAATCTTTTCCTTTCAAATGGATTAACAAAAAGTGGAGAGAGGGATTCTACGTAACAGCAATGGCCACCTCGGGAAGCCGGTGGGGCGTCGTTATGTCACGTGGTGCTGGATTTTCTGATCAGGTGGTCGAATTAGATTTCTTGTACCCAAGTGAAGGTATTCATCGTCGGTGGGACTGCGGGTATCGAATCACGGCAACTGCAGCAACCAGTGACCAAGCAGCCTTAGTTCTAAGCGTCCCGAAGCGAAAACCCACCGATGAAACACAAGAAACTCTCCGAACATCCGCATTTCCAAGCACCCACGTAAAGGAGAAATGGGCAAAGAACCTTTATATTGCATCCGTATGTTATGGAAGAACAGTTTCGTGA 2160 46.48 MPVLRGGVRRGRKKQQKDVLSPIEAEGEAIATRTRRRKAAAAVEVVPGNYEKQLQGGNDQQPPLVNDKVAVVVANPEERQVSKDGIRVGGGDEFVVGEVGGAAGGAEKEETGEKKMDDHDSKAGSNVKAQAVEEEGNTAPVPEKVQVGGSPLYRIDKKLGKGGFGQVYVGRRVSPVNTNERTGPGAVEVALKFEHRSSKGCNYGPPYEWQVYNTLGGSHGVPRVHYKGRQGDYYIMVMDMLGPSLWDVWNNNAHTMSVEMVACIAIEAISILEKVHSRGYIHGDVKPENFLLGPSGSPDEKKLFLVDLGLATRWRDASGQHVEYDQRPDVFRGTVRYASVHAHLGRIGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCFCPQPFRQFIEYVVNLKFDEEPNYAKYISLFDGIIGLNPEIRPINTDGAQKLVCQVGQKRGRLTLEEEDEEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADGRLSQHIEKGNEDGLFISSVASCQNLWALIMDAGSGFSSQVYELSPHFLHKEWIMEQWEKNYYITAVAGIVNGSSLVVMSKGTQYSQQSYKVSESFPFKWINKKWREGFYVTAMATSGSRWGVVMSRGAGFSDQVVELDFLYPSEGIHRRWDCGYRITATAATSDQAALVLSVPKRKPTDETQETLRTSAFPSTHVKEKWAKNLYIASVCYGRTVS 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39580430 39587269 + Sed0013678.1 Sed09g1609 726373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1609 719 Gene3D Transferase(Phosphotransferase) domain 1 112 480 - -
Sed09g1609 719 CDD STKc_CK1 153 428 - -
Sed09g1609 719 MobiDBLite consensus disorder prediction 101 126 - -
Sed09g1609 719 ProSiteProfiles Protein kinase domain profile. 153 438 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1609 719 MobiDBLite consensus disorder prediction 107 124 - -
Sed09g1609 719 MobiDBLite consensus disorder prediction 1 20 - -
Sed09g1609 719 ProSitePatterns Protein kinases ATP-binding region signature. 159 192 IPR017441 GO:0005524(InterPro)
Sed09g1609 719 SUPERFAMILY Protein kinase-like (PK-like) 153 432 IPR011009 -
Sed09g1609 719 PANTHER CASEIN KINASE-RELATED 152 481 IPR050235 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006897(PANTHER)|GO:0007165(PANTHER)|GO:0018105(PANTHER)
Sed09g1609 719 FunFam casein kinase 1-like protein HD16 126 475 - -
Sed09g1609 719 Pfam Protein kinase domain 153 386 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1609 719 SMART serkin_6 153 450 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1609 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1609 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2379 Sed-Chr3:19716391 Sed09g1609 Sed-Chr9:39580430 2.40E-246 dispersed
Sed03g2380 Sed-Chr3:19716391 Sed09g1609 Sed-Chr9:39580430 2.40E-246 dispersed
Sed07g1425 Sed-Chr7:10994692 Sed09g1609 Sed-Chr9:39580430 0.00E+00 dispersed
Sed07g1426 Sed-Chr7:10994692 Sed09g1609 Sed-Chr9:39580430 0.00E+00 dispersed
Sed09g1609 Sed-Chr9:39580430 Sed12g0466 Sed-Chr12:2804489 6.70E-50 dispersed
Sed03g1474 Sed-Chr3:9402104 Sed09g1609 Sed-Chr9:39580430 4.10E-277 transposed
Sed07g1423 Sed-Chr7:10994692 Sed09g1609 Sed-Chr9:39580430 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g5 . Blo12g01057 . Bda03g00159 . . . . Cmo05g00120 . . . . Car12g00229 Sed09g1609 Cpe07g00209 . Bhi04g00862 Tan02g2553 Cmetu03g1333 . Hepe10g0373 . Lcy13g1421 . . . . . . . . Cone7ag1308 . . . . . . . . . . . Bpe04g00141 . . . . . . Cma12g00246 . . . . Bhi09g02568 . . . Hepe01g2213 Mch11g0761 . Cla08g01215 Cam08g1676 Cec08g1254 Cco08g1373 Clacu08g1374 . Cre08g1159 . Csa02g02262 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000235 6 9 5 7 6 4 9 4 4 5 4 4 8 4 4 7 4 6 8 4 4 4 4 4 4 4 4 11 5 5 161
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79785 PF00069 Pkinase 8.20E-15 CL0016 Sed PK