Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1621 ATGGGAAAAGCTACAAGATGGTTGAAGGGTTTATTGGGGATCAAGAAAGAGAAAAACCCATCTGGGAATTTGAATTCAAATCCTACGGCGGTCGCAGGCGACAGAAAGGAAAAGAAAAGATGGAGTTTTGCAAAGTCCGGCAGAGATTCCGGCCAGACGCCGCCGGAGGCGGCGGTGGAATCTGCTTGGTTCAGATCCTGCATTTCTGAATCGGAGAAATTAGAGCAGAACAAACGCGCAATTGCGGTGGCGGCTGCCACCGCCGCCGCCGCTGACGCAGCTGTTGCGGCGGCGCAGGCGGCGGTCGCCGTCGTCCGGCTGACTAGCCAAGGAAGAGGGTCTCTGTTTATTAACGGAAGAGATCGATGGGCTGCTGTGAAAATTCAAACTGTTTTCAGAGGCTATTTGGCTAGAAAGGCCCTGAGAGCTCTGAAAGGGCTTGTGAAATTGCAGGCTGTGGTTAGAGGATTTCTTGTGAGAAAAAGAGCTGCTGCAACTCTTCACAGTATGCAGGCTCTTTTTCGAGCTCAAACCGCGGCTCGAACTCAAAGGGCTCGTCGATCTTTCAATAAAGAGAACCGGTTTATCCCCGAGATTCGGCCCCGAAAATCTGCGGAACGGTTTGATGAAACAAGAAGTGAATTCCATAGTAAGAGGTTGTCTATAGCATCATCTCAAGAAAACTGCAACAACTCGTTGGACGAGAGTCCAAAAATCGTTGAAATCGACACCTACCGAACCCGAACGAGGTCTCGTAGGTACATCTCTGCATTGTCCGAATGCAAAGGAGACGATGTTCTGCTCAAACCAATCGCATCACCGCTGCCGTATCCATCTCGACCGCGCGTGTCTACGCCCGAATGCCACAATGTGCTTCGAGACTTCGATTGGTGCTTGATGGGTGAAGACTGCAAGTTCCCTACCGCTCACAGCACGCCCCGGCTATCAAATTCATTCGCCTACGCCAATGTGCCGGTCACCCCGTCGAAGAGTGTCTGCGGCGACAGCTTCTATAGGCCGTACATGAACTGCCCGAATTATATGGCGAACACGCAATCGTTCAAGGCGAAAGTGAGGTCACAAAGTGCCCCGAAGCAGAGGCCGGAGCCCGGAACTAAGAAGAAGCCGTCATTGAATGAAATGATGGCAGCAAGGAACAGTTTAAGCAGTGTGAGAATGCAAAGACCAAGTAACCAAACACTGCAAGAAGAAGAAGAATATGAAGAAACATCATATGGTTTTTGA 1245 50.52 MGKATRWLKGLLGIKKEKNPSGNLNSNPTAVAGDRKEKKRWSFAKSGRDSGQTPPEAAVESAWFRSCISESEKLEQNKRAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSLFINGRDRWAAVKIQTVFRGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTAARTQRARRSFNKENRFIPEIRPRKSAERFDETRSEFHSKRLSIASSQENCNNSLDESPKIVEIDTYRTRTRSRRYISALSECKGDDVLLKPIASPLPYPSRPRVSTPECHNVLRDFDWCLMGEDCKFPTAHSTPRLSNSFAYANVPVTPSKSVCGDSFYRPYMNCPNYMANTQSFKAKVRSQSAPKQRPEPGTKKKPSLNEMMAARNSLSSVRMQRPSNQTLQEEEEYEETSYGF 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39659527 39663288 + Sed0004022.1 Sed09g1621 726385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1621 414 ProSiteProfiles IQ motif profile. 145 172 - -
Sed09g1621 414 SMART iq_5 120 142 IPR000048 GO:0005515(InterPro)
Sed09g1621 414 SMART iq_5 143 164 IPR000048 GO:0005515(InterPro)
Sed09g1621 414 MobiDBLite consensus disorder prediction 382 400 - -
Sed09g1621 414 Pfam IQ calmodulin-binding motif 122 142 IPR000048 GO:0005515(InterPro)
Sed09g1621 414 Pfam IQ calmodulin-binding motif 148 162 IPR000048 GO:0005515(InterPro)
Sed09g1621 414 Gene3D - 61 147 - -
Sed09g1621 414 ProSiteProfiles Zinc finger C3H1-type profile. 282 313 IPR000571 GO:0046872(InterPro)
Sed09g1621 414 Pfam Protein of unknown function (DUF4005) 312 394 IPR025064 -
Sed09g1621 414 ProSiteProfiles IQ motif profile. 121 149 - -
Sed09g1621 414 MobiDBLite consensus disorder prediction 17 56 - -
Sed09g1621 414 PANTHER IQ-DOMAIN 5-RELATED 6 395 - -
Sed09g1621 414 MobiDBLite consensus disorder prediction 356 414 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1621 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0818 Sed-Chr8:6625789 Sed09g1621 Sed-Chr9:39659527 1.80E-78 dispersed
Sed09g1621 Sed-Chr9:39659527 Sed12g1812 Sed-Chr12:29224881 2.00E-67 dispersed
Sed06g2181 Sed-Chr6:45593304 Sed09g1621 Sed-Chr9:39659527 3.10E-59 wgd
Sed07g1415 Sed-Chr7:10848107 Sed09g1621 Sed-Chr9:39659527 1.00E-167 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g2817 . 1 472 IQD Protein Family AT3G52290 53.3 1.4e-100 364.4
Sed01g2818 . 1 472 IQD Protein Family AT3G52290 53.3 1.4e-100 364.4
Sed03g0040 . 1 451 IQD Protein Family AT3G52290 53.1 5.7e-89 325.9
Sed03g0042 . 1 451 IQD Protein Family AT3G52290 53.1 5.7e-89 325.9
Sed03g0041 . 2 172 IQD Protein Family AT2G26410 57.6 1.2e-40 165.6
Sed03g0043 . 2 172 IQD Protein Family AT2G26410 57.6 1.2e-40 165.6
Sed07g2286 . 84 258 IQD Protein Family AT2G26410 50.6 1.9e-38 158.3
Sed08g1171 . 1 407 IQD Protein Family AT3G22190 55.5 1.1e-92 338.2
Sed08g1170 . 1 407 IQD Protein Family AT3G22190 55.5 1.1e-92 338.2
Sed12g1498 . 1 398 IQD Protein Family AT3G22190 56.3 4.7e-88 322.8
Sed13g1870 . 1 437 IQD Protein Family AT2G26180 61.0 3.3e-118 422.9
Sed13g1871 . 11 425 IQD Protein Family AT2G26180 61.4 1.1e-110 397.9
Sed11g1830 . 1 435 IQD Protein Family AT2G26180 55.2 7.0e-100 362.1
Sed10g0264 . 1 271 IQD Protein Family AT2G33990 52.3 3.5e-65 246.1
Sed14g1502 . 1 281 IQD Protein Family AT2G33990 51.2 1.5e-63 240.7
Sed14g1502 . 1 237 IQD Protein Family AT3G15050 52.3 1.4e-58 224.2
Sed04g1560 . 43 216 IQD Protein Family AT3G15050 62.7 8.0e-54 208.4
Sed09g0603 . 1 499 IQD Protein Family AT4G00820 51.5 9.8e-115 411.8
Sed09g0603 . 1 499 IQD Protein Family AT1G01110 50.5 7.7e-112 402.1
Sed09g1621 . 1 396 IQD Protein Family AT3G16490 52.7 9.5e-75 278.5
Sed07g1415 . 1 393 IQD Protein Family AT3G16490 51.4 1.0e-68 258.5
Sed08g0818 . 1 356 IQD Protein Family AT3G16490 52.6 6.8e-65 245.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004070 3 1 3 2 3 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 1 0 44