Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1621 ATGGGAAAAGCTACAAGATGGTTGAAGGGTTTATTGGGGATCAAGAAAGAGAAAAACCCATCTGGGAATTTGAATTCAAATCCTACGGCGGTCGCAGGCGACAGAAAGGAAAAGAAAAGATGGAGTTTTGCAAAGTCCGGCAGAGATTCCGGCCAGACGCCGCCGGAGGCGGCGGTGGAATCTGCTTGGTTCAGATCCTGCATTTCTGAATCGGAGAAATTAGAGCAGAACAAACGCGCAATTGCGGTGGCGGCTGCCACCGCCGCCGCCGCTGACGCAGCTGTTGCGGCGGCGCAGGCGGCGGTCGCCGTCGTCCGGCTGACTAGCCAAGGAAGAGGGTCTCTGTTTATTAACGGAAGAGATCGATGGGCTGCTGTGAAAATTCAAACTGTTTTCAGAGGCTATTTGGCTAGAAAGGCCCTGAGAGCTCTGAAAGGGCTTGTGAAATTGCAGGCTGTGGTTAGAGGATTTCTTGTGAGAAAAAGAGCTGCTGCAACTCTTCACAGTATGCAGGCTCTTTTTCGAGCTCAAACCGCGGCTCGAACTCAAAGGGCTCGTCGATCTTTCAATAAAGAGAACCGGTTTATCCCCGAGATTCGGCCCCGAAAATCTGCGGAACGGTTTGATGAAACAAGAAGTGAATTCCATAGTAAGAGGTTGTCTATAGCATCATCTCAAGAAAACTGCAACAACTCGTTGGACGAGAGTCCAAAAATCGTTGAAATCGACACCTACCGAACCCGAACGAGGTCTCGTAGGTACATCTCTGCATTGTCCGAATGCAAAGGAGACGATGTTCTGCTCAAACCAATCGCATCACCGCTGCCGTATCCATCTCGACCGCGCGTGTCTACGCCCGAATGCCACAATGTGCTTCGAGACTTCGATTGGTGCTTGATGGGTGAAGACTGCAAGTTCCCTACCGCTCACAGCACGCCCCGGCTATCAAATTCATTCGCCTACGCCAATGTGCCGGTCACCCCGTCGAAGAGTGTCTGCGGCGACAGCTTCTATAGGCCGTACATGAACTGCCCGAATTATATGGCGAACACGCAATCGTTCAAGGCGAAAGTGAGGTCACAAAGTGCCCCGAAGCAGAGGCCGGAGCCCGGAACTAAGAAGAAGCCGTCATTGAATGAAATGATGGCAGCAAGGAACAGTTTAAGCAGTGTGAGAATGCAAAGACCAAGTAACCAAACACTGCAAGAAGAAGAAGAATATGAAGAAACATCATATGGTTTTTGA 1245 50.52 MGKATRWLKGLLGIKKEKNPSGNLNSNPTAVAGDRKEKKRWSFAKSGRDSGQTPPEAAVESAWFRSCISESEKLEQNKRAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSLFINGRDRWAAVKIQTVFRGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTAARTQRARRSFNKENRFIPEIRPRKSAERFDETRSEFHSKRLSIASSQENCNNSLDESPKIVEIDTYRTRTRSRRYISALSECKGDDVLLKPIASPLPYPSRPRVSTPECHNVLRDFDWCLMGEDCKFPTAHSTPRLSNSFAYANVPVTPSKSVCGDSFYRPYMNCPNYMANTQSFKAKVRSQSAPKQRPEPGTKKKPSLNEMMAARNSLSSVRMQRPSNQTLQEEEEYEETSYGF 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39659527 39663288 + Sed0004022.1 Sed09g1621 726385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1621 414 ProSiteProfiles IQ motif profile. 145 172 - -
Sed09g1621 414 SMART iq_5 120 142 IPR000048 GO:0005515(InterPro)
Sed09g1621 414 SMART iq_5 143 164 IPR000048 GO:0005515(InterPro)
Sed09g1621 414 MobiDBLite consensus disorder prediction 382 400 - -
Sed09g1621 414 Pfam IQ calmodulin-binding motif 122 142 IPR000048 GO:0005515(InterPro)
Sed09g1621 414 Pfam IQ calmodulin-binding motif 148 162 IPR000048 GO:0005515(InterPro)
Sed09g1621 414 Gene3D - 61 147 - -
Sed09g1621 414 ProSiteProfiles Zinc finger C3H1-type profile. 282 313 IPR000571 GO:0046872(InterPro)
Sed09g1621 414 Pfam Protein of unknown function (DUF4005) 312 394 IPR025064 -
Sed09g1621 414 ProSiteProfiles IQ motif profile. 121 149 - -
Sed09g1621 414 MobiDBLite consensus disorder prediction 17 56 - -
Sed09g1621 414 PANTHER IQ-DOMAIN 5-RELATED 6 395 - -
Sed09g1621 414 MobiDBLite consensus disorder prediction 356 414 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0818 Sed-Chr8:6625789 Sed09g1621 Sed-Chr9:39659527 1.80E-78 dispersed
Sed09g1621 Sed-Chr9:39659527 Sed12g1812 Sed-Chr12:29224881 2.00E-67 dispersed
Sed06g2181 Sed-Chr6:45593304 Sed09g1621 Sed-Chr9:39659527 3.10E-59 wgd
Sed07g1415 Sed-Chr7:10848107 Sed09g1621 Sed-Chr9:39659527 1.00E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1621 - - - 0.0