Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1666 ATGGATGGAGGTGGCGCAGTGCGCAATCGCACAGTGGAAGATGTTTTCAGTGATTTTAGAGGCCGGAGAACTGGCGTTATCAAAGCCCTCACCGTCGATGTTAAAGATTTCTTTCGAGAATGTGATCCTGAGAAGGAAAATCTATGTTTGTATGGATTTCCAAATGAAGGATGGGAAGTTAACTTACCGGCTGAAGAAGTACCTCCTGAAATTCCCGAGCCGGCGTTGGGTATTAATTTCGCAAGAGATGGCATGCAAGAAAAGGATTGGCTGGCTTTGGTTGCTGTCCATAGCGACACTTGGTTGCTCTCTGTTGCCTATTATTTTGGCGCGAGATTCGCATTCGACAAATCTGATAGGAGGCGGCTTTTTAACATGATAAATGATTTGCCAACAGTATTTGAAGTAGTCACAGGTGTTGCAAAGAAACATGCCAAGGAAAAGTCATCAACTGCTAATGGTAGCAGATCCAAGTCCAGCTTTAAAGCGCGGGAAGCCGAACCTCATGGAATGTATGCGAGGCAACCGCAGGGAAGGGAAGAGGTAGAGGCTTCATATGAAGAAGATGAAGACGAGCACGGCGACACCTTGTGCGGGGCATGCGGCGAGAATTACGCATCGGACGAATTCTGGATTTGCTGCGACATCTGTGAGAAATGGTTCCATGGAAAATGTGTGAGAATAACTCCATCAAAAGCAGAGCACATAAAGCAGTACAAATGCCCATCCTGCAGCAGCAGCAACAAGAAAGGCCGCATTTAA 762 46.59 MDGGGAVRNRTVEDVFSDFRGRRTGVIKALTVDVKDFFRECDPEKENLCLYGFPNEGWEVNLPAEEVPPEIPEPALGINFARDGMQEKDWLALVAVHSDTWLLSVAYYFGARFAFDKSDRRRLFNMINDLPTVFEVVTGVAKKHAKEKSSTANGSRSKSSFKAREAEPHGMYARQPQGREEVEASYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPSKAEHIKQYKCPSCSSSNKKGRI 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40082862 40087201 + Sed0026174.1 Sed09g1666 726430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1666 253 SUPERFAMILY FYVE/PHD zinc finger 186 250 IPR011011 -
Sed09g1666 253 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Sed09g1666 253 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Sed09g1666 253 SMART PHD_3 197 245 IPR001965 -
Sed09g1666 253 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Sed09g1666 253 Pfam PHD-finger 198 244 IPR019787 -
Sed09g1666 253 FunFam PHD finger alfin-like protein 190 246 - -
Sed09g1666 253 MobiDBLite consensus disorder prediction 160 182 - -
Sed09g1666 253 MobiDBLite consensus disorder prediction 145 187 - -
Sed09g1666 253 CDD PHD_AL_plant 197 245 IPR044104 -
Sed09g1666 253 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Sed09g1666 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2569 Sed-Chr7:41225394 Sed09g1666 Sed-Chr9:40082862 1.30E-87 dispersed
Sed07g2570 Sed-Chr7:41225394 Sed09g1666 Sed-Chr9:40082862 1.40E-87 dispersed
Sed08g1789 Sed-Chr8:32644505 Sed09g1666 Sed-Chr9:40082862 4.80E-99 dispersed
Sed09g1666 Sed-Chr9:40082862 Sed11g0863 Sed-Chr11:20748200 1.80E-98 dispersed
Sed03g1808 Sed-Chr3:11980566 Sed09g1666 Sed-Chr9:40082862 3.10E-103 wgd
Sed04g0789 Sed-Chr4:6533395 Sed09g1666 Sed-Chr9:40082862 7.70E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39631 PF12165 Alfin 6.50E-66 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1666 K26274 - csv:101222322 459.914