Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g1666 | ATGGATGGAGGTGGCGCAGTGCGCAATCGCACAGTGGAAGATGTTTTCAGTGATTTTAGAGGCCGGAGAACTGGCGTTATCAAAGCCCTCACCGTCGATGTTAAAGATTTCTTTCGAGAATGTGATCCTGAGAAGGAAAATCTATGTTTGTATGGATTTCCAAATGAAGGATGGGAAGTTAACTTACCGGCTGAAGAAGTACCTCCTGAAATTCCCGAGCCGGCGTTGGGTATTAATTTCGCAAGAGATGGCATGCAAGAAAAGGATTGGCTGGCTTTGGTTGCTGTCCATAGCGACACTTGGTTGCTCTCTGTTGCCTATTATTTTGGCGCGAGATTCGCATTCGACAAATCTGATAGGAGGCGGCTTTTTAACATGATAAATGATTTGCCAACAGTATTTGAAGTAGTCACAGGTGTTGCAAAGAAACATGCCAAGGAAAAGTCATCAACTGCTAATGGTAGCAGATCCAAGTCCAGCTTTAAAGCGCGGGAAGCCGAACCTCATGGAATGTATGCGAGGCAACCGCAGGGAAGGGAAGAGGTAGAGGCTTCATATGAAGAAGATGAAGACGAGCACGGCGACACCTTGTGCGGGGCATGCGGCGAGAATTACGCATCGGACGAATTCTGGATTTGCTGCGACATCTGTGAGAAATGGTTCCATGGAAAATGTGTGAGAATAACTCCATCAAAAGCAGAGCACATAAAGCAGTACAAATGCCCATCCTGCAGCAGCAGCAACAAGAAAGGCCGCATTTAA | 762 | 46.59 | MDGGGAVRNRTVEDVFSDFRGRRTGVIKALTVDVKDFFRECDPEKENLCLYGFPNEGWEVNLPAEEVPPEIPEPALGINFARDGMQEKDWLALVAVHSDTWLLSVAYYFGARFAFDKSDRRRLFNMINDLPTVFEVVTGVAKKHAKEKSSTANGSRSKSSFKAREAEPHGMYARQPQGREEVEASYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPSKAEHIKQYKCPSCSSSNKKGRI | 253 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 40082862 | 40087201 | + | Sed0026174.1 | Sed09g1666 | 726430 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g1666 | 253 | SUPERFAMILY | FYVE/PHD zinc finger | 186 | 250 | IPR011011 | - | |
Sed09g1666 | 253 | ProSitePatterns | Zinc finger PHD-type signature. | 198 | 244 | IPR019786 | - | |
Sed09g1666 | 253 | Pfam | Alfin | 11 | 138 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Sed09g1666 | 253 | SMART | PHD_3 | 197 | 245 | IPR001965 | - | |
Sed09g1666 | 253 | ProSiteProfiles | Zinc finger PHD-type profile. | 195 | 247 | IPR019787 | - | |
Sed09g1666 | 253 | Pfam | PHD-finger | 198 | 244 | IPR019787 | - | |
Sed09g1666 | 253 | FunFam | PHD finger alfin-like protein | 190 | 246 | - | - | |
Sed09g1666 | 253 | MobiDBLite | consensus disorder prediction | 160 | 182 | - | - | |
Sed09g1666 | 253 | MobiDBLite | consensus disorder prediction | 145 | 187 | - | - | |
Sed09g1666 | 253 | CDD | PHD_AL_plant | 197 | 245 | IPR044104 | - | |
Sed09g1666 | 253 | PANTHER | CPG BINDING PROTEIN | 9 | 250 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Sed09g1666 | 253 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 246 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g2569 | Sed-Chr7:41225394 | Sed09g1666 | Sed-Chr9:40082862 | 1.30E-87 | dispersed | |
Sed07g2570 | Sed-Chr7:41225394 | Sed09g1666 | Sed-Chr9:40082862 | 1.40E-87 | dispersed | |
Sed08g1789 | Sed-Chr8:32644505 | Sed09g1666 | Sed-Chr9:40082862 | 4.80E-99 | dispersed | |
Sed09g1666 | Sed-Chr9:40082862 | Sed11g0863 | Sed-Chr11:20748200 | 1.80E-98 | dispersed | |
Sed03g1808 | Sed-Chr3:11980566 | Sed09g1666 | Sed-Chr9:40082862 | 3.10E-103 | wgd | |
Sed04g0789 | Sed-Chr4:6533395 | Sed09g1666 | Sed-Chr9:40082862 | 7.70E-121 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39631 | PF12165 | Alfin | 6.50E-66 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g1666 | K26274 | - | csv:101222322 | 459.914 |