Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1667 ATGAATTTAGGCGCGGCGGAGGAAGAATCGCCGCAAGAGATTCATATTCCGGCCGAAATCGATTGGCAAATGCTTGATAAATCTAAATTCTTCTTTCTCGGTGCAGCTCTGTTTTCAGGTGTTTCAGCGTCTTTGTACCCTATGGTGGTGTTGAAAACCCGGCAGCAAGTTGCTCAATCGCAGCTTTCGTGTTTCCGAACCGGGTTTTCGCTCGTTCGCCACGAAGGCTTTCGAGCTCTGTATCGAGGATTTGGCACTTCTCTAATGGGAACCATCCCTGCTAGGGCTCTGTACATGGGAGCTCTTGAATTTACAAAGAGTTATGTTGGAACTGCCACTGTTAGAATGGGATTTCCAGAAGCTTCTGCTGCTACAATCGCTAATGCAGCTGCTGGATTGAGTGCGGCAATGGCGGCTCAGCTCGTGTGGACTCCGGTTGATGTTGTGAGCCAGAGACTAATGGTTCAAGGCACCTACAATCCCACCGCTCCAAAACCTTCGTCGTCGTCGTCGGTTCGTTACGTCAATGGGATTGATGCATTTCGAAAAATACTCAATGCCGATGGTCCCCGAGGCCTCTACCGGGGCTTTGGGATATCGATTTTGACATATGCGCCGTCAAATGCAGTGTGGTGGGCTTCTTATTATGTAGCGCAGCGGTTGGTTTGGGGTGGAATTGGATGCTATTGTGCTAAGAAGGTTGATGACGGGAATGACATTGTAGGTGGTTCTAATGTTTATAGACCGGATTCGAAGATGGTGATTGCGGTTCAGGGCGCGAGTGCAGCGATGGCGGGTAGTATCTCGGCTTTGATTACAATGCCTCTTGATACAATCAAGACTAGGTTGCAAGTTTTGGATGGGGATGAGAATGGTAGACGAGGGCCAACGTTTGGACAGACATTGAGAAATTTAGTGAGGGAAGGGGGGTGGTCGGCCTGTTACCGAGGTTTGGCGCCCCGGTGCGCGTCGATGTCGATGTCGGCGACAACGATGATCACTACATATGAGTTTCTCAAACGGCTATCAACCAAGAATCAAGACGGTTTGACAAGCTGA 1059 49.58 MNLGAAEEESPQEIHIPAEIDWQMLDKSKFFFLGAALFSGVSASLYPMVVLKTRQQVAQSQLSCFRTGFSLVRHEGFRALYRGFGTSLMGTIPARALYMGALEFTKSYVGTATVRMGFPEASAATIANAAAGLSAAMAAQLVWTPVDVVSQRLMVQGTYNPTAPKPSSSSSVRYVNGIDAFRKILNADGPRGLYRGFGISILTYAPSNAVWWASYYVAQRLVWGGIGCYCAKKVDDGNDIVGGSNVYRPDSKMVIAVQGASAAMAGSISALITMPLDTIKTRLQVLDGDENGRRGPTFGQTLRNLVREGGWSACYRGLAPRCASMSMSATTMITTYEFLKRLSTKNQDGLTS 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40089232 40090913 - Sed0006138.1 Sed09g1667 726431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1667 352 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 221 IPR018108 -
Sed09g1667 352 ProSiteProfiles Solute carrier (Solcar) repeat profile. 253 342 IPR018108 -
Sed09g1667 352 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Sed09g1667 352 Gene3D Mitochondrial carrier domain 30 350 IPR023395 -
Sed09g1667 352 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085(InterPro)
Sed09g1667 352 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085(InterPro)
Sed09g1667 352 Pfam Mitochondrial carrier protein 36 110 IPR018108 -
Sed09g1667 352 Pfam Mitochondrial carrier protein 256 345 IPR018108 -
Sed09g1667 352 Pfam Mitochondrial carrier protein 125 222 IPR018108 -
Sed09g1667 352 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 8 348 - -
Sed09g1667 352 SUPERFAMILY Mitochondrial carrier 23 339 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1667 Sed-Chr9:40089232 Sed11g2055 Sed-Chr11:34532966 6.60E-67 dispersed
Sed13g1891 Sed-Chr13:23895993 Sed09g1667 Sed-Chr9:40089232 2.40E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1667 K15121 - csv:101210602 567.77