Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1675 ATGAAAACCGAGTCGATGAGACGGGGAGGGAGAATTAGGGAGAGGATCCGTCGAAGCCATCTCTATACATTCAGTTGCTTTCGAGCTGAGAGTGCACGTGAAGCTGACGATTCGAATCCTTTAACAGGGCCGGGTTTCTCACGAACTGTCTATTGTAACCAACCTCAAGTCCATGAGAAAAAACCATTGAAATACTGCACAAATTACATATCCACGACGAAGTATAATGTTCTTACTTTCGTGCCTAAGGCTCTCTTTGAGCAATTCCGGAGGGTTGCAAATGTGTACTTTCTTTTGGCTGCATTGTTGTCACTCACTCCAGTTGCTCCATTTTCTGCCATGAGCATGATTGCTCCTCTGGTATTTGTTGTTGGGCTCAGTATGGCTAAAGAAGCTCTCGAGGACTGGCGCCGATTTGTGCAGGATATGAAGGTTAATCTCAGGAAAGCGATTGTCCATAAAGGGGATGGTGTTTTTGGTCATAGACCTTGGCACAAGCTTCGAGTAGGTGATATAGTGAAAGTAGAGAAGGATAAGTTCTTTCCCGCTGATTTACTTCTTCTGTCGTCGTGCTATGAGGACGGAATATGTTATGTGGAAACCATGAATTTGGATGGTGAGACTAATCTCAAAGTAAAGAGATCTTTGGAAGTAACCTTATCTTTGGATGATGATGCAGCTTTCAAAGATTTTGCTGGAAAAATTTACTGTGAAGATCCAAACCCGAATCTTTACACATTTGTAGGTAATTTTGAGTTTGATCGGCAGATTTATCCTCTTGATCCTAATCAGATTCTTCTCAGGGATTCAAAATTGAGGAATACAGCTTATGCCTATGGAGTGGTGATATTTACTGGACATGATAGTAAAGTCATGCAAAATGCTACAAAATCTCCTTCGAAAAGAAGTAGAATAGAGAGAAAAATGGACAAAATTATTTACTTCCTTTTTACTCTCCTTATATTGATCTCATCAATGAGTTCAATAGGTTTTGCTGTGAAGACAAAGGACGAAATGACAGACTGGTGGTATTTACAAACTTCTGGTGGTGATGATCCACTGTATAACCCTCAAAAGCCAGCCTTATCAGGGCTCATACATTTGATCACTGCTCTTATACTCTATGGATATTTGATACCAATCTCGCTATATGTTTCCATCGAGGTTGTTAAGGTTCTGCAAGCTTCTTTCATGAACCAAGATATTCACATGTACTGTGAAGAGACTGGCAATCCAGCACGGGCTCGGACCTCAAATTTGAATGAGGAGTTGGGTCAGGTAGACACAATCCTATCAGACAAAACTGGCACTTTGACTTGCAATCAGATGGACTTTCTGAAATGTTCCATTGCTGGCACTGCATATGGTACTAAATCTAGTGAGGTTGAACTTGCAGCTGCAAGACAGATGGAATATGACCTTGAGGATCTGGATGGAGAATATTCTAATTTTCATGCTAAAAAAAGTACCCGACAGCCTTCCATGGCAAGTAGCAGAAAAAGTTCTGAGATAGAACTGGAGAATGTTGTTTCTTCAAGTAATGCCAGAGATCATAAGTCTGCTATAAAGTATTTTAGTTTCGAGGACAGCCGTCTAACAGATGGAAACTGGTTGAATGAGCCTAATCGTGATGTTCTTTTACTGTTCTTCCGAATTTTAGCAATTTGTCACACTGCAATTCCTGAGCAGAATGAGGAAACTGGTGCTTTTACATACGAAGCGGAGTCCCCCGATGAAGGGGCTTTTCTTGTTGCAGCAAGAGAATTTGGTTTTGAGTTTTGTAAGAGAACACAATCTTCCTTGGTTGTCCGTGAAAGATATCCTTCACCTGACCGTGTAGTTGAAAGGGAATACAAAATTTTGAATCTTTTGGATTTCACTAGCAAGAGGAAGAGAATGTCTGTAATTGTTAGGGACGAGGATGGCCAGATTATTCTTCTCTGCAAAGGTGCCGATAGCATCATCTTCGATCGACTAGCAAAGTACGGAAGAACATATGAGGAAGCAACCACAAAACATTTGAATGAATATGGAGAAGCCGGGTTGCGTACTCTGGCACTTGCTTATAGGAAGCTTGAGGAGTCCGAATACACTGCTTGGAACAATGAGTTTCAGAAGGCTAAGACGTCCATTGGAGGAGATAGGGATGCAATGCTCGAGCGAGTGTCCGACCTCATGGAGCGAGAATTAACCCTTGTTGGTGCTACCGCTGTGGAGGACAAGTTACAGAATGGGGTGCCCCAATGCATTGACAAACTTGCACAAGCTGGTCTTAAGATCTGGGTTCTAACAGGAGATAAGATGGAAACTGCCATCAACATAGGATACGCATGCAGTTTACTACGACAGGGAATGAAGCGGATCTGCATATCAACAAGCTCAGATACCTTGGCTCAGGAAAGCAAAGAGGCCATGAAAGAAAATATTTTGAATCAAATCACCAACGCCACACAAATGATCAAGCTGGAGAAGGATCCACATGCTGCATTTTCTTTAATCATTGATGGGAAGACTCTAACTTATGCTCTCGAGGATGATATGAAGCTTCAATTCCTTGCTCTCGCTGTTGATTGTGCGTCTGTCATTTGTTGTCGGGTCTCCCCCAAGCAGAAGGCCCTGGTAACCAGGTTAGTGAAAGAAGGTACTGGAAAAACCACTTTGGCAATTGGTGATGGTGCAAACGATGTAGGAATGATTCAAGAGGCCGATATTGGTGTCGGTATCAGTGGGGTTGAAGGTATGCAGGCTGTGATGGCTAGTGATTTCTCGATTGCTCAATTTCGGTTTCTCGAAAGGCTTCTGGTAGTCCATGGTCATTGGTGCTACAAGAGGATAGCGCAAATGATATGCTACTTTTTCTACAAGAACATTGCATTCGGATTAACGCTGTTCTACTTCGAAGCATATGCGGGATTTTCCGGACAATCAATATATGATGACTTCTACATGCTATCATTTAACGTTATTCTCACCTCTTTGCCTGTAATTTCTCTTGGAGTTTTTGAGCAAGATGTTTCTTCTGAGGTGTGCCTACAGTTCCCTGCACTGTATCAGCAAGGACCCCGAAACTTGTTCTTCGACTGGCCTCGGATTTTCGGATGGATGGGGAACGCAGTCTACTCCTCTCTAGTTACTTTCTTCCTCAATCTCATCATCTTCTACGATCAGGCATTCCGTTCAGGCGGCCAAACCGCCGATATGACTACTGTAGGAACCACCATGTTTACCTGCATCATATGGGCGGTAAATTGCCAGATCGCCCTCACGATGAGCCATTTCACCTGGATCCAACACGTTTTCGTCTGGGGTAGTATCGCGATGTGGTATTTGTTCATCTTAGTCTATGGAATGTTCATATACTCTGGAAATGCATATCAAATCTTCATTGAAGCACTAAGCCCTGCTCCTGTTTACTGGATAGCCACCATTTTAGTAACCATTACATGCAATCTCCCATATCTTGCACACATATCTGTTCAAAGAAGCTTCCATCCAATGGATCATCACATAATCCAAGAAATCAAATATTATAGAAAAGATGTGGAAGACACACACATGTGGACAAGGGAAAGATCAAAAGCAAGGCAAAAGACAAAGATAGGATTCACAGCCAGAGTAGAAGCAAAAATAAGGCAATTAAAAGGAAAGCTGCAAAAGAAGAACTCTTCCCTTTCTTCAAATTCTGCTGCATCATGA 3696 42.32 MKTESMRRGGRIRERIRRSHLYTFSCFRAESAREADDSNPLTGPGFSRTVYCNQPQVHEKKPLKYCTNYISTTKYNVLTFVPKALFEQFRRVANVYFLLAALLSLTPVAPFSAMSMIAPLVFVVGLSMAKEALEDWRRFVQDMKVNLRKAIVHKGDGVFGHRPWHKLRVGDIVKVEKDKFFPADLLLLSSCYEDGICYVETMNLDGETNLKVKRSLEVTLSLDDDAAFKDFAGKIYCEDPNPNLYTFVGNFEFDRQIYPLDPNQILLRDSKLRNTAYAYGVVIFTGHDSKVMQNATKSPSKRSRIERKMDKIIYFLFTLLILISSMSSIGFAVKTKDEMTDWWYLQTSGGDDPLYNPQKPALSGLIHLITALILYGYLIPISLYVSIEVVKVLQASFMNQDIHMYCEETGNPARARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGTKSSEVELAAARQMEYDLEDLDGEYSNFHAKKSTRQPSMASSRKSSEIELENVVSSSNARDHKSAIKYFSFEDSRLTDGNWLNEPNRDVLLLFFRILAICHTAIPEQNEETGAFTYEAESPDEGAFLVAAREFGFEFCKRTQSSLVVRERYPSPDRVVEREYKILNLLDFTSKRKRMSVIVRDEDGQIILLCKGADSIIFDRLAKYGRTYEEATTKHLNEYGEAGLRTLALAYRKLEESEYTAWNNEFQKAKTSIGGDRDAMLERVSDLMERELTLVGATAVEDKLQNGVPQCIDKLAQAGLKIWVLTGDKMETAINIGYACSLLRQGMKRICISTSSDTLAQESKEAMKENILNQITNATQMIKLEKDPHAAFSLIIDGKTLTYALEDDMKLQFLALAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAYAGFSGQSIYDDFYMLSFNVILTSLPVISLGVFEQDVSSEVCLQFPALYQQGPRNLFFDWPRIFGWMGNAVYSSLVTFFLNLIIFYDQAFRSGGQTADMTTVGTTMFTCIIWAVNCQIALTMSHFTWIQHVFVWGSIAMWYLFILVYGMFIYSGNAYQIFIEALSPAPVYWIATILVTITCNLPYLAHISVQRSFHPMDHHIIQEIKYYRKDVEDTHMWTRERSKARQKTKIGFTARVEAKIRQLKGKLQKKNSSLSSNSAAS 1231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40123945 40130574 - Sed0024651.1 Sed09g1675 726439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1675 1231 SUPERFAMILY HAD-like 419 933 IPR036412 -
Sed09g1675 1231 Pfam Phospholipid-translocating ATPase N-terminal 50 117 IPR032631 -
Sed09g1675 1231 FunFam Phospholipid-transporting ATPase 600 731 - -
Sed09g1675 1231 FunFam Phospholipid-transporting ATPase 733 929 - -
Sed09g1675 1231 NCBIfam phospholipid-translocating P-type ATPase 65 1173 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Sed09g1675 1231 Gene3D - 428 440 IPR023214 -
Sed09g1675 1231 SFLD p-type atpase 415 940 IPR044492 -
Sed09g1675 1231 CDD P-type_ATPase_APLT_Dnf-like 68 1048 - -
Sed09g1675 1231 FunFam Phospholipid-transporting ATPase 126 296 - -
Sed09g1675 1231 Pfam Phospholipid-translocating P-type ATPase C-terminal 917 1165 IPR032630 -
Sed09g1675 1231 Gene3D - 441 465 IPR023299 GO:0000166(InterPro)
Sed09g1675 1231 ProSitePatterns E1-E2 ATPases phosphorylation site. 433 439 IPR018303 -
Sed09g1675 1231 SUPERFAMILY Calcium ATPase, transmembrane domain M 61 1156 IPR023298 -
Sed09g1675 1231 Gene3D - 734 929 IPR023214 -
Sed09g1675 1231 Gene3D - 601 733 IPR023299 GO:0000166(InterPro)
Sed09g1675 1231 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 43 1184 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Sed09g1675 1231 SFLD Haloacid Dehalogenase 415 940 - -
Sed09g1675 1231 NCBIfam HAD-IC family P-type ATPase 365 473 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed09g1675 1231 NCBIfam HAD-IC family P-type ATPase 860 970 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed09g1675 1231 SUPERFAMILY Calcium ATPase, transduction domain A 154 295 IPR008250 -
Sed09g1675 1231 PRINTS P-type cation-transporting ATPase superfamily signature 889 908 - -
Sed09g1675 1231 PRINTS P-type cation-transporting ATPase superfamily signature 431 445 - -
Sed09g1675 1231 Pfam Cation transport ATPase (P-type) 555 661 - -
Sed09g1675 1231 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 532 695 IPR023299 GO:0000166(InterPro)
Sed09g1675 1231 Gene3D - 125 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1675 Sed-Chr9:40123945 Sed11g1728 Sed-Chr11:32384420 0.00E+00 dispersed
Sed09g1675 Sed-Chr9:40123945 Sed09g1676 Sed-Chr9:40123945 0.00E+00 tandem
Sed04g0798 Sed-Chr4:6648510 Sed09g1675 Sed-Chr9:40123945 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1675 K01530 - csv:101221220 2207.56