Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1676 ATGAAAACCGAGTCGATGAGACGGGGAGGGAGAATTAGGGAGAGGATCCGTCGAAGCCATCTCTATACATTCAGTTGCTTTCGAGCTGAGAGTGCACGTGAAGCTGACGATTCGAATCCTTTAACAGGGCCGGGTTTCTCACGAACTGTCTATTGTAACCAACCTCAAGTCCATGAGAAAAAACCATTGAAATACTGCACAAATTACATATCCACGACGAAGTATAATGTTCTTACTTTCGTGCCTAAGGCTCTCTTTGAGCAATTCCGGAGGGTTGCAAATGTGTACTTTCTTTTGGCTGCATTGTTGTCACTCACTCCAGTTGCTCCATTTTCTGCCATGAGCATGATTGCTCCTCTGGTATTTGTTGTTGGGCTCAGTATGGCTAAAGAAGCTCTCGAGGACTGGCGCCGATTTGTGCAGGATATGAAGGTTAATCTCAGGAAAGCGATTGTCCATAAAGGGGATGGTGTTTTTGGTCATAGACCTTGGCACAAGCTTCGAGTAGGTGATATAGTGAAAGTAGAGAAGGATAAGTTCTTTCCCGCTGATTTACTTCTTCTGTCGTCGTGCTATGAGGACGGAATATGTTATGTGGAAACCATGAATTTGGATGGTGAGACTAATCTCAAAGTAAAGAGATCTTTGGAAGTAACCTTATCTTTGGATGATGATGCAGCTTTCAAAGATTTTGCTGGAAAAATTTACTGTGAAGATCCAAACCCGAATCTTTACACATTTGTAGGTAATTTTGAGTTTGATCGGCAGATTTATCCTCTTGATCCTAATCAGATTCTTCTCAGGGATTCAAAATTGAGGAATACAGCTTATGCCTATGGAGTGGTGATATTTACTGGACATGATAGTAAAGTCATGCAAAATGCTACAAAATCTCCTTCGAAAAGAAGTAGAATAGAGAGAAAAATGGACAAAATTATTTACTTCCTTTTTACTCTCCTTATATTGATCTCATCAATGAGTTCAATAGGTTTTGCTGTGAAGACAAAGGACGAAATGACAGACTGGTGGTATTTACAAACTTCTGGTGGTGATGATCCACTGTATAACCCTCAAAAGCCAGCCTTATCAGGGCTCATACATTTGATCACTGCTCTTATACTCTATGGATATTTGATACCAATCTCGCTATATGTTTCCATCGAGGTTGTTAAGGTTCTGCAAGCTTCTTTCATGAACCAAGATATTCACATGTACTGTGAAGAGACTGGCAATCCAGCACGGGCTCGGACCTCAAATTTGAATGAGGAGTTGGGTCAGGTAGACACAATCCTATCAGACAAAACTGGCACTTTGACTTGCAATCAGATGGACTTTCTGAAATGTTCCATTGCTGGCACTGCATATGGTACTAAATCTAGTGAGGTTGAACTTGCAGCTGCAAGACAGATGGAATATGACCTTGAGGATCTGGATGGAGAATATTCTAATTTTCATGCTAAAAAAAGTACCCGACAGCCTTCCATGGCAAGTAGCAGAAAAAGTTCTGAGATAGAACTGGAGAATGTTGTTTCTTCAAGTAATGCCAGAGATCATAAGTCTGCTATAAAGTATTTTAGTTTCGAGGACAGCCGTCTAACAGATGGAAACTGGTTGAATGAGCCTAATCGTGATGTTCTTTTACTGTTCTTCCGAATTTTAGCAATTTGTCACACTGCAATTCCTGAGCAGAATGAGGAAACTGGTGCTTTTACATACGAAGCGGAGTCCCCCGATGAAGGGGCTTTTCTTGTTGCAGCAAGAGAATTTGGTTTTGAGTTTTGTAAGAGAACACAATCTTCCTTGGTTGTCCGTGAAAGATATCCTTCACCTGACCGTGTAGTTGAAAGGGAATACAAAATTTTGAATCTTTTGGATTTCACTAGCAAGAGGAAGAGAATGTCTGTAATTGTTAGGGACGAGGATGGCCAGATTATTCTTCTCTGCAAAGGTGCCGATAGCATCATCTTCGATCGACTAGCAAAGTACGGAAGAACATATGAGGAAGCAACCACAAAACATTTGAATGAATATGGAGAAGCCGGGTTGCGTACTCTGGCACTTGCTTATAGGAAGCTTGAGGAGTCCGAATACACTGCTTGGAACAATGAGTTTCAGAAGGCTAAGACGTCCATTGGAGGAGATAGGGATGCAATGCTCGAGCGAGTGTCCGACCTCATGGAGCGAGAATTAACCCTTGTTGGTGCTACCGCTGTGGAGGACAAGTTACAGAATGGGGTGCCCCAATGCATTGACAAACTTGCACAAGCTGGTCTTAAGATCTGGGTTCTAACAGGAGATAAGATGGAAACTGCCATCAACATAGGATACGCATGCAGTTTACTACGACAGGGAATGAAGCGGATCTGCATATCAACAAGCTCAGATACCTTGGCTCAGGAAAGCAAAGAGGCCATGAAAGAAAATATTTTGAATCAAATCACCAACGCCACACAAATGATCAAGCTGGAGAAGGATCCACATGCTGCATTTTCTTTAATCATTGATGGGAAGACTCTAACTTATGCTCTCGAGGATGATATGAAGCTTCAATTCCTTGCTCTCGCTGTTGATTGTGCGTCTGTCATTTGTTGTCGGGTCTCCCCCAAGCAGAAGGCCCTGGTAACCAGGTTAGTGAAAGAAGGTACTGGAAAAACCACTTTGGCAATTGGTGATGGTGCAAACGATGTAGGAATGATTCAAGAGGCCGATATTGGTGTCGGTATCAGTGGGGTTGAAGGTATGCAGGTAGGCACAAAAGACTCTTCTATTGCAACATCGTCTACAAAATCAATGTCTACCGTTCTCGTTTAA 2811 42.23 MKTESMRRGGRIRERIRRSHLYTFSCFRAESAREADDSNPLTGPGFSRTVYCNQPQVHEKKPLKYCTNYISTTKYNVLTFVPKALFEQFRRVANVYFLLAALLSLTPVAPFSAMSMIAPLVFVVGLSMAKEALEDWRRFVQDMKVNLRKAIVHKGDGVFGHRPWHKLRVGDIVKVEKDKFFPADLLLLSSCYEDGICYVETMNLDGETNLKVKRSLEVTLSLDDDAAFKDFAGKIYCEDPNPNLYTFVGNFEFDRQIYPLDPNQILLRDSKLRNTAYAYGVVIFTGHDSKVMQNATKSPSKRSRIERKMDKIIYFLFTLLILISSMSSIGFAVKTKDEMTDWWYLQTSGGDDPLYNPQKPALSGLIHLITALILYGYLIPISLYVSIEVVKVLQASFMNQDIHMYCEETGNPARARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGTKSSEVELAAARQMEYDLEDLDGEYSNFHAKKSTRQPSMASSRKSSEIELENVVSSSNARDHKSAIKYFSFEDSRLTDGNWLNEPNRDVLLLFFRILAICHTAIPEQNEETGAFTYEAESPDEGAFLVAAREFGFEFCKRTQSSLVVRERYPSPDRVVEREYKILNLLDFTSKRKRMSVIVRDEDGQIILLCKGADSIIFDRLAKYGRTYEEATTKHLNEYGEAGLRTLALAYRKLEESEYTAWNNEFQKAKTSIGGDRDAMLERVSDLMERELTLVGATAVEDKLQNGVPQCIDKLAQAGLKIWVLTGDKMETAINIGYACSLLRQGMKRICISTSSDTLAQESKEAMKENILNQITNATQMIKLEKDPHAAFSLIIDGKTLTYALEDDMKLQFLALAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQVGTKDSSIATSSTKSMSTVLV 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40123945 40130574 - Sed0024651.2 Sed09g1676 726440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1676 936 NCBIfam HAD-IC family P-type ATPase 365 473 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed09g1676 936 Gene3D - 441 466 IPR023299 GO:0000166(InterPro)
Sed09g1676 936 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 43 917 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Sed09g1676 936 PRINTS P-type cation-transporting ATPase superfamily signature 889 908 - -
Sed09g1676 936 PRINTS P-type cation-transporting ATPase superfamily signature 431 445 - -
Sed09g1676 936 SUPERFAMILY Calcium ATPase, transmembrane domain M 61 425 IPR023298 -
Sed09g1676 936 Gene3D - 125 298 - -
Sed09g1676 936 NCBIfam phospholipid-translocating P-type ATPase 65 917 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Sed09g1676 936 SUPERFAMILY Calcium ATPase, transduction domain A 154 295 IPR008250 -
Sed09g1676 936 Gene3D - 734 929 IPR023214 -
Sed09g1676 936 Gene3D - 428 440 IPR023214 -
Sed09g1676 936 Pfam Phospholipid-translocating ATPase N-terminal 50 117 IPR032631 -
Sed09g1676 936 SUPERFAMILY HAD-like 419 915 IPR036412 -
Sed09g1676 936 FunFam Phospholipid-transporting ATPase 126 296 - -
Sed09g1676 936 FunFam Phospholipid-transporting ATPase 733 927 - -
Sed09g1676 936 ProSitePatterns E1-E2 ATPases phosphorylation site. 433 439 IPR018303 -
Sed09g1676 936 Pfam Cation transport ATPase (P-type) 555 661 - -
Sed09g1676 936 FunFam Phospholipid-transporting ATPase 600 731 - -
Sed09g1676 936 SFLD Haloacid Dehalogenase 415 926 - -
Sed09g1676 936 SFLD p-type atpase 415 926 IPR044492 -
Sed09g1676 936 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 532 695 IPR023299 GO:0000166(InterPro)
Sed09g1676 936 Gene3D - 601 733 IPR023299 GO:0000166(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0798 Sed-Chr4:6648510 Sed09g1676 Sed-Chr9:40123945 0.00E+00 dispersed
Sed09g1676 Sed-Chr9:40123945 Sed11g1728 Sed-Chr11:32384420 1.50E-291 dispersed
Sed09g1675 Sed-Chr9:40123945 Sed09g1676 Sed-Chr9:40123945 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1676 K01530 - csv:101221220 1617.82