Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1680 ATGATGATGAAAAGAAACTTTTTGTCTCAACAATTAGTCATGGATGAAAATTTGTCCAATTTGACTTCTGCTTCTGGTGAAGCAGTTAATGGTTGTGTTTCTTCTGCCAGTATAACTGAATTTCCCAATCAATATTTTGCTCCTCATGAAACCCAACAACCACCTCCTTCGAAGAAGAAGCGTAACCTCCCCGGTAATCCCGACCCAGATGCGGAAGTGATAGCGTTATCGCCGAAGACACTGATGGCGACAAACCGATTCGTGTGCGAGATTTGTAGCAAAGGGTTTCAAAGGGATCAAAATCTTCAACTACATAGAAGAGGGCACAATCTTCCATGGAAATTGAAGCAAAGATCAAACAAAGAAGTGATAAAGAAGAAAGTATATATTTGTCCAGAGGCAAGTTGTGTTCATCATGATCCATCAAGAGCTCTTGGAGATCTAACAGGAATTAAAAAACACTTTTCAAGAAAACATGGTGAAAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATTCCAAGATTTGTGGCACAAAAGAATATAGATGTGATTGTGGAACTCTCTTTTCAAGGAGAGATAGTTTTATTACACACAGAGCCTTTTGTGATGCTCTAGCTGATGAAAGTGCAAGATCAGCCATTTCATTAAACCCTCTCCACTCTTACAACAACAACAATAATAATTCACAACAATTTTCAAATAATAATAATAATAATATTCTCGCTCTCAAACGAGATTTCAACAACGACGACGACAACAACAACAATATGAGAGGAGAAATCCCGGGATGGCTGCAACCTACAAACCTCCAAGGAGAAATGTTTGTTGGAAGTAGCTACAACCGAACTCTTAACCCTAGCGGGCAGGGGTACGGGCCCGTGCCCATGCCCACGAGTAGTCTTCCGGCTCGGCCTTATCAAACGGCTTCGCTTTCGGCGACTGCGCTGCTGCAGAAGGCAGCCCAAATGGGTGCAACCATGAGTAGTAGTACTATTACCACCAGTGGCTCTATGCCAAGGCCCCACAATCCGGTTCACATGTCTACAGGTTTAAGGTCACATGGAGGTGAAATGGGCGGAGAAAGAGGGGCAGTCAGTTGTAGTATTAGTACTATTTGTACTGATGATTATGGGAACAAAGCTGCTTCTTATCCCTTCCTCCAACATGGTTCTTCCTCCTTCACGGGCGCTGCCGCCATCCCGACTACGCATCATCACGCTGCCACCGCTGCCGTTTCGGGCGGCCGAAGCGAGGGCTTAACGAGAGATTTCTTGGGGCTTCGTCCTCTTTCTCATGGAGATATTCTAAGCTTTGCTGGTTTTGGGAACTGCATTGTTCCCAATTCTGCCCATCTCCAGAGTCAAATCCACAAGCCATGGCAGGGGTAG 1419 44.19 MMMKRNFLSQQLVMDENLSNLTSASGEAVNGCVSSASITEFPNQYFAPHETQQPPPSKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYICPEASCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAISLNPLHSYNNNNNNSQQFSNNNNNNILALKRDFNNDDDNNNNMRGEIPGWLQPTNLQGEMFVGSSYNRTLNPSGQGYGPVPMPTSSLPARPYQTASLSATALLQKAAQMGATMSSSTITTSGSMPRPHNPVHMSTGLRSHGGEMGGERGAVSCSISTICTDDYGNKAASYPFLQHGSSSFTGAAAIPTTHHHAATAAVSGGRSEGLTRDFLGLRPLSHGDILSFAGFGNCIVPNSAHLQSQIHKPWQG 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40159673 40163986 + Sed0019919.1 Sed09g1680 726444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1680 472 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 190 224 - -
Sed09g1680 472 Gene3D Classic Zinc Finger 142 221 - -
Sed09g1680 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Sed09g1680 472 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 125 159 - -
Sed09g1680 472 SMART c2h2final6 129 159 IPR013087 -
Sed09g1680 472 SMART c2h2final6 164 184 IPR013087 -
Sed09g1680 472 SMART c2h2final6 87 109 IPR013087 -
Sed09g1680 472 MobiDBLite consensus disorder prediction 46 72 - -
Sed09g1680 472 FunFam protein indeterminate-domain 12-like 66 135 - -
Sed09g1680 472 Gene3D Classic Zinc Finger 87 135 - -
Sed09g1680 472 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Sed09g1680 472 Pfam Zinc finger, C2H2 type 87 109 IPR013087 -
Sed09g1680 472 SUPERFAMILY beta-beta-alpha zinc fingers 86 184 IPR036236 -
Sed09g1680 472 FunFam protein indeterminate-domain 5, chloroplastic-like 142 221 - -
Sed09g1680 472 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 163 187 - -
Sed09g1680 472 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 49 439 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3966 Sed-Chr4:47585521 Sed09g1680 Sed-Chr9:40159673 7.90E-84 dispersed
Sed09g1680 Sed-Chr9:40159673 Sed10g0908 Sed-Chr10:7033708 7.20E-85 dispersed
Sed13g1864 Sed-Chr13:23640561 Sed09g1680 Sed-Chr9:40159673 3.50E-88 wgd
Sed06g0083 Sed-Chr6:477339 Sed09g1680 Sed-Chr9:40159673 2.30E-96 wgd
Sed06g2222 Sed-Chr6:45918264 Sed09g1680 Sed-Chr9:40159673 1.70E-102 wgd
Sed07g1321 Sed-Chr7:10092360 Sed09g1680 Sed-Chr9:40159673 1.60E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39632 PF00096 zf-C2H2 0.0081 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1680 K25870 - csv:101220200 602.823