Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g1680 | ATGATGATGAAAAGAAACTTTTTGTCTCAACAATTAGTCATGGATGAAAATTTGTCCAATTTGACTTCTGCTTCTGGTGAAGCAGTTAATGGTTGTGTTTCTTCTGCCAGTATAACTGAATTTCCCAATCAATATTTTGCTCCTCATGAAACCCAACAACCACCTCCTTCGAAGAAGAAGCGTAACCTCCCCGGTAATCCCGACCCAGATGCGGAAGTGATAGCGTTATCGCCGAAGACACTGATGGCGACAAACCGATTCGTGTGCGAGATTTGTAGCAAAGGGTTTCAAAGGGATCAAAATCTTCAACTACATAGAAGAGGGCACAATCTTCCATGGAAATTGAAGCAAAGATCAAACAAAGAAGTGATAAAGAAGAAAGTATATATTTGTCCAGAGGCAAGTTGTGTTCATCATGATCCATCAAGAGCTCTTGGAGATCTAACAGGAATTAAAAAACACTTTTCAAGAAAACATGGTGAAAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATTCCAAGATTTGTGGCACAAAAGAATATAGATGTGATTGTGGAACTCTCTTTTCAAGGAGAGATAGTTTTATTACACACAGAGCCTTTTGTGATGCTCTAGCTGATGAAAGTGCAAGATCAGCCATTTCATTAAACCCTCTCCACTCTTACAACAACAACAATAATAATTCACAACAATTTTCAAATAATAATAATAATAATATTCTCGCTCTCAAACGAGATTTCAACAACGACGACGACAACAACAACAATATGAGAGGAGAAATCCCGGGATGGCTGCAACCTACAAACCTCCAAGGAGAAATGTTTGTTGGAAGTAGCTACAACCGAACTCTTAACCCTAGCGGGCAGGGGTACGGGCCCGTGCCCATGCCCACGAGTAGTCTTCCGGCTCGGCCTTATCAAACGGCTTCGCTTTCGGCGACTGCGCTGCTGCAGAAGGCAGCCCAAATGGGTGCAACCATGAGTAGTAGTACTATTACCACCAGTGGCTCTATGCCAAGGCCCCACAATCCGGTTCACATGTCTACAGGTTTAAGGTCACATGGAGGTGAAATGGGCGGAGAAAGAGGGGCAGTCAGTTGTAGTATTAGTACTATTTGTACTGATGATTATGGGAACAAAGCTGCTTCTTATCCCTTCCTCCAACATGGTTCTTCCTCCTTCACGGGCGCTGCCGCCATCCCGACTACGCATCATCACGCTGCCACCGCTGCCGTTTCGGGCGGCCGAAGCGAGGGCTTAACGAGAGATTTCTTGGGGCTTCGTCCTCTTTCTCATGGAGATATTCTAAGCTTTGCTGGTTTTGGGAACTGCATTGTTCCCAATTCTGCCCATCTCCAGAGTCAAATCCACAAGCCATGGCAGGGGTAG | 1419 | 44.19 | MMMKRNFLSQQLVMDENLSNLTSASGEAVNGCVSSASITEFPNQYFAPHETQQPPPSKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYICPEASCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAISLNPLHSYNNNNNNSQQFSNNNNNNILALKRDFNNDDDNNNNMRGEIPGWLQPTNLQGEMFVGSSYNRTLNPSGQGYGPVPMPTSSLPARPYQTASLSATALLQKAAQMGATMSSSTITTSGSMPRPHNPVHMSTGLRSHGGEMGGERGAVSCSISTICTDDYGNKAASYPFLQHGSSSFTGAAAIPTTHHHAATAAVSGGRSEGLTRDFLGLRPLSHGDILSFAGFGNCIVPNSAHLQSQIHKPWQG | 472 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 40159673 | 40163986 | + | Sed0019919.1 | Sed09g1680 | 726444 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g1680 | 472 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 190 | 224 | - | - | |
Sed09g1680 | 472 | Gene3D | Classic Zinc Finger | 142 | 221 | - | - | |
Sed09g1680 | 472 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 87 | 109 | IPR013087 | - | |
Sed09g1680 | 472 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 125 | 159 | - | - | |
Sed09g1680 | 472 | SMART | c2h2final6 | 129 | 159 | IPR013087 | - | |
Sed09g1680 | 472 | SMART | c2h2final6 | 164 | 184 | IPR013087 | - | |
Sed09g1680 | 472 | SMART | c2h2final6 | 87 | 109 | IPR013087 | - | |
Sed09g1680 | 472 | MobiDBLite | consensus disorder prediction | 46 | 72 | - | - | |
Sed09g1680 | 472 | FunFam | protein indeterminate-domain 12-like | 66 | 135 | - | - | |
Sed09g1680 | 472 | Gene3D | Classic Zinc Finger | 87 | 135 | - | - | |
Sed09g1680 | 472 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 89 | 109 | IPR013087 | - | |
Sed09g1680 | 472 | Pfam | Zinc finger, C2H2 type | 87 | 109 | IPR013087 | - | |
Sed09g1680 | 472 | SUPERFAMILY | beta-beta-alpha zinc fingers | 86 | 184 | IPR036236 | - | |
Sed09g1680 | 472 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 142 | 221 | - | - | |
Sed09g1680 | 472 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 163 | 187 | - | - | |
Sed09g1680 | 472 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 49 | 439 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3966 | Sed-Chr4:47585521 | Sed09g1680 | Sed-Chr9:40159673 | 7.90E-84 | dispersed | |
Sed09g1680 | Sed-Chr9:40159673 | Sed10g0908 | Sed-Chr10:7033708 | 7.20E-85 | dispersed | |
Sed13g1864 | Sed-Chr13:23640561 | Sed09g1680 | Sed-Chr9:40159673 | 3.50E-88 | wgd | |
Sed06g0083 | Sed-Chr6:477339 | Sed09g1680 | Sed-Chr9:40159673 | 2.30E-96 | wgd | |
Sed06g2222 | Sed-Chr6:45918264 | Sed09g1680 | Sed-Chr9:40159673 | 1.70E-102 | wgd | |
Sed07g1321 | Sed-Chr7:10092360 | Sed09g1680 | Sed-Chr9:40159673 | 1.60E-162 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39632 | PF00096 | zf-C2H2 | 0.0081 | CL0361 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g1680 | K25870 | - | csv:101220200 | 602.823 |