Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1706 ATGGATCATTTGAGCTGGGACGGATACAGATCGAGACTCACGACGAACACGTCGTTTTGGACCAATTACCAAAAAGGAGTTGAAGAAAAATTCACCATATCCAACACAAATTCCAAGTTCTTCAACTCAGTTCCTCAAGACCTCCCAATCAAAGAAGCTGCAACAACCTTTTCAACTGATATGATTTCAGAAACATGGGATCTGCCTCTAGTTATGAGCCCACCATTGACAAGCTTCCCAACATCAAAAGACATGGACATTGTTGGCTATGAATCAAATCTTCTCCCCGGCTTCAACAACGACAAAACGGTCCCGACTTGCTCCCTCGAGTCATTAGACTGCTTGCTCTCAGCCACAAACAGCAACACAGACACATCAGTTGAAGATGATGGATCAATGTCAAGGATGTTAACAGATTACACCAATTTATTGAACAACTTTGGAAGCAACAATGCAACAACAAATTCACAAGAATCAAATAAGAATCTCACAAATTCCACAAAAAGAGCCTATGATCAAACAGAGTACTCTGCTTTTTCCAACACAACTTCAAACAATGAAGGGTTTAGGATCATAACAGATCAAAATCTTCAGAATCTTCAAAAACAAAAGAAACCCAGATCAGAAAAGTTACCAAATTCATCAAACATCAACTTTCAACAATCAAGTTCATCAGGATCATCATCATGTATTGATCAAGAGCCAGATCCAGAAGCCATAGCACAAATGAAGGAAATGATATACAGAGCAGCAGCATTCAGGCCAGTGAATTTAGGGGTAGAAATGGTAGAAAAGCCCAAAAGAAAAAATGTGAGAATTTCAACAGATCCACAAACAGTAGCAGCAAGGCAAAGAAGGGAGAGAATTAGTGAAAGAATTAGGGTTTTGCAAAGGATTGTTCCTGGTGGAAGCAAAATGGATACAGCATCAATGCTTGATGAAGCTGCAAATTATCTTAAGTTTCTGAAGTCTCAAATCAAAGCATTGGAGAATCTTGGCCAAAAGATTGAGTCTTTGAATTGCCCTTCAACTAGCATAGCTTTTTCTTTCAACCCATCTTTTCTTCCATTACAAGCATCTTCATCTTCTTCTTCATCCCATAACCATTTTATTAACCAATATCCTCAAATCTAA 1134 38.54 MDHLSWDGYRSRLTTNTSFWTNYQKGVEEKFTISNTNSKFFNSVPQDLPIKEAATTFSTDMISETWDLPLVMSPPLTSFPTSKDMDIVGYESNLLPGFNNDKTVPTCSLESLDCLLSATNSNTDTSVEDDGSMSRMLTDYTNLLNNFGSNNATTNSQESNKNLTNSTKRAYDQTEYSAFSNTTSNNEGFRIITDQNLQNLQKQKKPRSEKLPNSSNINFQQSSSSGSSSCIDQEPDPEAIAQMKEMIYRAAAFRPVNLGVEMVEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRIVPGGSKMDTASMLDEAANYLKFLKSQIKALENLGQKIESLNCPSTSIAFSFNPSFLPLQASSSSSSSHNHFINQYPQI 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40320560 40321693 + Sed0004460.1 Sed09g1706 726470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1706 377 MobiDBLite consensus disorder prediction 148 168 - -
Sed09g1706 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 273 322 IPR011598 GO:0046983(InterPro)
Sed09g1706 377 FunFam BHLH transcription factor 276 340 - -
Sed09g1706 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 278 334 IPR036638 GO:0046983(InterPro)
Sed09g1706 377 Gene3D - 278 341 IPR036638 GO:0046983(InterPro)
Sed09g1706 377 Coils Coil 312 339 - -
Sed09g1706 377 SMART finulus 279 328 IPR011598 GO:0046983(InterPro)
Sed09g1706 377 MobiDBLite consensus disorder prediction 199 234 - -
Sed09g1706 377 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 112 368 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1706 377 MobiDBLite consensus disorder prediction 210 232 - -
Sed09g1706 377 Pfam Helix-loop-helix DNA-binding domain 282 323 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2819 Sed-Chr8:39576820 Sed09g1706 Sed-Chr9:40320560 7.90E-08 dispersed
Sed09g1706 Sed-Chr9:40320560 Sed13g1761 Sed-Chr13:22619005 1.20E-29 dispersed
Sed06g0110 Sed-Chr6:688810 Sed09g1706 Sed-Chr9:40320560 9.10E-34 wgd
Sed06g2198 Sed-Chr6:45701422 Sed09g1706 Sed-Chr9:40320560 2.10E-11 wgd
Sed07g1366 Sed-Chr7:10381042 Sed09g1706 Sed-Chr9:40320560 2.10E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39633 PF00010 HLH 8.50E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1706 - - - 0.0