Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1718 ATGGAATCAAGTTTTTTGTTCTTGAAATCGGTTTTTGTAGTTTTGGCACTCATGGAAGTTGTTTCTGCTACGCTATCCCCTTCTGGCGTTAACTACGAAGTGGTGGCTTTGATGGCAATTAAAAATGATTTAATCGACCCCCACAATGTTTTGGAGAATTGGGATTCTAATTCTGTGGATCCTTGTAGCTGGAGAATGGTCACTTGTTTTACAGATGGATATGTTTCTGCTCTGGGGCTACCGAGCCAGAGTTTGTCTGGAGTTTTATCACCCGGGATTGGAAACCTCACTAAGTTGGAATCACTATTGCTTCAAAACAATGCTATTTCGGGGCCAATTCCTGCAACCATTGGAAAGTTAGAGAACCTCCGGACTCTTGATCTCTCCAATAACGAATTTAGTGGCGGAATACCGAGTTCCCTTGGGGACATAAAGAAACTGAACTTTTTGCTACTAAATAACAACAGCCTAACTGGACCTTGTCCCGTGTCTCTATCCAAAATTGAAGGTCTCACACTCGTGGACCTTTCATACAACAACCTGAGTGGCTCCTTGCCCAAAATATCAGCAAGAACATTCAAAATTGTTGGTAACCCTCTGACCTGTGGTCCTAACAACTGCTTTTCCAACTTACCCGAGCCGTTGTCGTTTGGCTCAGATGCTCTAGAAGGAAATTTGGGATTTGGTAAGAGGCACCACAAGGCAATTGCTTTTGGGGCGAGTTTTAGTGCTGCTTTTATTGTATTAGTTTTTATTGGCTTACTTTTCTGGTGGAGATACAGACACAACCAGCAGATTTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGTTTGGGTCACTTGAGAAGGTACACATTCAAGGAACTTCGTGCCGCAACCGATCATTTCAACGCAAAGAATATCTTAGGAAGAGGTGGGTTTGGAATTGTGTACAAGGGATGCTTGAATGATGGGACTCTGGTAGCGGTTAAACGGTTAATTGATTATAACACCGCTGGTGGGGAGATCCAATTTCAGACTGAAGTTGAGATGATAAGCTTAGCTGTCCATCGAAATCTTCTCAGGCTTTTTGGTTTTTGTTCTACTGAGAGTGAAAGACTTCTTGTTTACCCTTTCATGCCCAATGGAAGCGTTGCATCTCGTCTTCGAGATCACATCCATGGGCAGCCGGCTTTAGATTGGGCCATGAGAAAGAGAATAGCCTTGGGCACAGCTAGAGGGTTGGTGTACTTGCATGAGCAGTGTGAGCCCAAAATTATTCATCGTGATGTGAAGGCTGCCAACATTCTCCTTGATGAAGAGTTCGAAGCAGTCGTCGGAGACTTTGGGTTGGCCAAACTTCTTGATCATAGGGATTCTCATGTGACTACAGCCGTGCGTGGCACTGTTGGCCATATTGCTCCCGAGTACCTATCAACCGGACAGTCGTCAGAAAAGACTGATGTTTTCGGGTTTGGAATCTTGCTTTTGGAGCTAATTACTGGACAAAAGGCTCTGGATTTTGGTCGAGGAGCAAACCAGAAAGGAGTGATGCTTGATTGGGTGAAGAAGTTGCATCAGGAAGGAAAGCTGAATGTGATGGTGGATAAGGATGTAAGAAGTAAGTTGAACAGAGTTGAGTTGGAGGAAATGGTTCAGGTTGCTCTGTTATGCACTCAATTCAATCCTTCTCACAGACCCAAAATGTCTGAAGTATTAAAAATGTTGGAGGGTGATGGTTTAGCTGAGAAATGGGAAGCATCACAGAACGTCGAGACGACACCGAGATACCGAGCATGTGAGAACCGCCCTCAACGATACTCGGATTATATTGAAGAATCGTCTCTGATAGTAGAAGCCATGGAGCTTTCAGGCCCCAGATGA 1869 44.14 MESSFLFLKSVFVVLALMEVVSATLSPSGVNYEVVALMAIKNDLIDPHNVLENWDSNSVDPCSWRMVTCFTDGYVSALGLPSQSLSGVLSPGIGNLTKLESLLLQNNAISGPIPATIGKLENLRTLDLSNNEFSGGIPSSLGDIKKLNFLLLNNNSLTGPCPVSLSKIEGLTLVDLSYNNLSGSLPKISARTFKIVGNPLTCGPNNCFSNLPEPLSFGSDALEGNLGFGKRHHKAIAFGASFSAAFIVLVFIGLLFWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNAKNILGRGGFGIVYKGCLNDGTLVAVKRLIDYNTAGGEIQFQTEVEMISLAVHRNLLRLFGFCSTESERLLVYPFMPNGSVASRLRDHIHGQPALDWAMRKRIALGTARGLVYLHEQCEPKIIHRDVKAANILLDEEFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVKKLHQEGKLNVMVDKDVRSKLNRVELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQNVETTPRYRACENRPQRYSDYIEESSLIVEAMELSGPR 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40428308 40433541 + Sed0005365.1 Sed09g1718 726482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1718 622 Pfam Protein tyrosine and serine/threonine kinase 300 571 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g1718 622 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524(InterPro)
Sed09g1718 622 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Sed09g1718 622 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 622 - -
Sed09g1718 622 FunFam Somatic embryogenesis receptor-like kinase 1 375 591 - -
Sed09g1718 622 Gene3D Ribonuclease Inhibitor 30 208 IPR032675 -
Sed09g1718 622 SUPERFAMILY L domain-like 31 211 - -
Sed09g1718 622 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515(InterPro)
Sed09g1718 622 Gene3D Transferase(Phosphotransferase) domain 1 375 591 - -
Sed09g1718 622 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 210 - -
Sed09g1718 622 FunFam Somatic embryogenesis receptor kinase 1 267 374 - -
Sed09g1718 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g1718 622 ProSiteProfiles Protein kinase domain profile. 298 581 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1718 622 Gene3D Phosphorylase Kinase; domain 1 267 374 - -
Sed09g1718 622 SMART serkin_6 298 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1718 622 SUPERFAMILY Protein kinase-like (PK-like) 282 575 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1718 Sed-Chr9:40428308 Sed11g2070 Sed-Chr11:34677154 5.70E-183 dispersed
Sed09g1718 Sed-Chr9:40428308 Sed09g1719 Sed-Chr9:40428308 4.2e-311 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79795 PF00069 Pkinase 4.40E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1718 - - - 0.0