Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1726 ATGAAAGAAACCGATACCATGGAAACCCCAATGGCCGCCGGAATCCCAAACTCCGGCGACCAAACCCGGAGAAAAAGCAAAAAGCTCCAAATCCTAGCCATCTCCGCCCTCCTCCTCGTCGTCGGCGCCGCCGTCGGCATCATCGCCGGCGCAGCCACCTCCGGCAACCGGTCCGAGGCGGGGCACGCCATCGTAAAGAGCACGTGCGGGAGCACGCTGTACCCGGATCTGTGCTTCTCAACGGTTGCCCAAAGCAAAGGGGGTTTGAGTAAAGTGAGAAACCAAAAAGACGTGATTGAGGTTTCCATTAACATTACGGTGAAAGGCGTGGAAGAAAATTACTACAGGGTCCAGAAATTGGCGGCGCTGAACAACATTACTCGCAGAGAGAAAATTGCCCTTCATGATTGCCTCGAGACAATTGACGAAACTCTGGATGAGCTTCATAAAGCCGTTGTGGATCTGCATTTGTACCCGAATCACAAGTCTTTGTCTCAGCACGCTGATGATCTTAAGACTCTGCTTAGTTCTGCCATCACGAATCAGGAGACATGTCTGGATGGGTTTTCGCACGAGGGAGCAGACAAAAGCGTGCGAGAGAAATTGAAAGAAGGGCAAATACAAGTGGAGCACATGTGCAGCAATGTACTGGCCATGATTAAGAACATGACTGACACCGACATAGCCAATTACGAGGCCAAAATGGGAACAGCAACAACACCCAACAACAACAGAAAGCTCAAGGAGTCCGAGTGGCCGGAGTGGCTGTCCGCCGGAGACCGCCGCATGCTGCAGTCCTCCGCCGTGACGCCCGACGTGGTCGTGGCGGCGGACGGCAGCGGGGACTTCACCACGGTGGGGGACGCGGTGGCGGCGGCGCCGGTGAAGAGTAGCAAGAGACATGTGATAAGGATTAAGGCCGGGGTGTATAGGGAGAATGTGGAAGTGCCTAAGAAGAAAACCAATATTATGTTTATGGGAGATGGAAGGACTAACACTATTATTACCGGTGACCGGAATGTCGTCGACGGCACCACCACTTTCAAGTCTGCTACCGTCGCTGCGGTGGGAGGAGGATTTCTAGCGCGTGACATCACGTTCGAAAACACGGCCGGTCCATCAAAGCACCAAGCCGTGGCCCTGCGGGTGGGTTCAGACCTCTCGGCCTTCTACCAATGCGACATGTTGGCCTACCAAGACACCCTCTACGTCCACTCCAACCGCCAGTTCTACATCAACTGCCTCATCTCCGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGCCATGTTCCAAGACTGCGACATCCACGCCCGCCGCCCCAACTCCGGCCAGAAAAACATGCTCACGGCCCAGTCCCGGTCCGACCCCAACCAGAACACCGGCATCGTCATCCTCCGCTCCCGGATCGGCGCCACCTCCGACCTCCGCCCGGTCCAGAACAGCTTCCCCACCTTCCTGGGAAGGCCGTGGAAGGAATATTCCAGAACCCTGGTGATGCAATCCTCCATTAGTGACGTCATCGACCCCAAGGGGTGGCATGAGTGGGCCGGTGATTTCGGTCTGGATACGTTGTTTTACGGCGAGTATCAGAACACTGGACCGGGGGCTTCGACCGCCGGCCGGGTGACGTGGAAGGGGTTCAGGGTGATTCAGAACGCCACCGAGGCTCAGGATTTTACTGCGGCTAAATTTATTGGCGGTGGGAGTTGGTTGCGAGCTACTGGCTTCCCGTTCTCTCTAGACCTCTGA 1752 56.05 MKETDTMETPMAAGIPNSGDQTRRKSKKLQILAISALLLVVGAAVGIIAGAATSGNRSEAGHAIVKSTCGSTLYPDLCFSTVAQSKGGLSKVRNQKDVIEVSINITVKGVEENYYRVQKLAALNNITRREKIALHDCLETIDETLDELHKAVVDLHLYPNHKSLSQHADDLKTLLSSAITNQETCLDGFSHEGADKSVREKLKEGQIQVEHMCSNVLAMIKNMTDTDIANYEAKMGTATTPNNNRKLKESEWPEWLSAGDRRMLQSSAVTPDVVVAADGSGDFTTVGDAVAAAPVKSSKRHVIRIKAGVYRENVEVPKKKTNIMFMGDGRTNTIITGDRNVVDGTTTFKSATVAAVGGGFLARDITFENTAGPSKHQAVALRVGSDLSAFYQCDMLAYQDTLYVHSNRQFYINCLISGTVDFIFGNAAAMFQDCDIHARRPNSGQKNMLTAQSRSDPNQNTGIVILRSRIGATSDLRPVQNSFPTFLGRPWKEYSRTLVMQSSISDVIDPKGWHEWAGDFGLDTLFYGEYQNTGPGASTAGRVTWKGFRVIQNATEAQDFTAAKFIGGGSWLRATGFPFSLDL 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40469150 40473733 - Sed0015055.1 Sed09g1726 726490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1726 583 MobiDBLite consensus disorder prediction 1 21 - -
Sed09g1726 583 FunFam Pectinesterase 61 224 - -
Sed09g1726 583 Pfam Pectinesterase 272 568 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed09g1726 583 ProSitePatterns Pectinesterase signature 1. 297 316 IPR018040 -
Sed09g1726 583 PANTHER PECTINESTERASE 29 574 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed09g1726 583 CDD PMEI-like_3 67 224 - -
Sed09g1726 583 Pfam Plant invertase/pectin methylesterase inhibitor 64 219 IPR006501 GO:0004857(InterPro)
Sed09g1726 583 SUPERFAMILY Pectin lyase-like 267 582 IPR011050 -
Sed09g1726 583 Gene3D - 266 583 IPR012334 -
Sed09g1726 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 224 IPR035513 -
Sed09g1726 583 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
Sed09g1726 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 62 224 IPR035513 -
Sed09g1726 583 SMART PMEI_2 60 219 IPR006501 GO:0004857(InterPro)
Sed09g1726 583 NCBIfam pectinesterase inhibitor domain 46 223 IPR006501 GO:0004857(InterPro)
Sed09g1726 583 FunFam Pectinesterase 266 583 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0038 Sed-Chr6:224580 Sed09g1726 Sed-Chr9:40469150 1.20E-195 dispersed
Sed07g0565 Sed-Chr7:4262324 Sed09g1726 Sed-Chr9:40469150 5.40E-140 dispersed
Sed07g0850 Sed-Chr7:6228990 Sed09g1726 Sed-Chr9:40469150 1.80E-114 dispersed
Sed09g0951 Sed-Chr9:31083975 Sed09g1726 Sed-Chr9:40469150 1.00E-165 dispersed
Sed09g1726 Sed-Chr9:40469150 Sed14g1360 Sed-Chr14:22453067 2.70E-118 dispersed
Sed04g1778 Sed-Chr4:32417976 Sed09g1726 Sed-Chr9:40469150 5.70E-105 wgd
Sed04g2368 Sed-Chr4:37098954 Sed09g1726 Sed-Chr9:40469150 2.70E-267 wgd
Sed06g0037 Sed-Chr6:219585 Sed09g1726 Sed-Chr9:40469150 3.10E-103 wgd
Sed06g2286 Sed-Chr6:46340802 Sed09g1726 Sed-Chr9:40469150 4.50E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1726 K01051 - csv:101212388 912.909