Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0023 ATGGCGCCGGGCCTTAGAGACCTGCAGCTTACCCAGGTCGCCGCCGACCGCCGCCCTCCGCCGATTCCCGCCGCGGCTGCCCTCCCCGAAGATCTCGAGGACGTGCGCTTGCTTGATTCCTACGAGACCCCGGATGAGAATTTCCCCAAAATTGGGGAAACTATGAGGAGGCTTCAGGTCCGAGTTTCTGGTATGACCTGCGCTGCTTGTTCTAATTCCGTCGAAGCTGCTCTCATGGGCGTCAATGGCGTTTTCATGGCTTCCGTTGCGTTGCTCCAGAACAGAGCTGACGTTGTTTTTGACCCCAACTTGGTTAAGGATGATGACATCAAAGAAGCTATAGAAGATGCTGGATTTGATGCTGACATTATCCCTGAAACCAGTTCAGTTGGAAAGAAGTCGCACGGAACACTGGTGGGTCAATTTACCATAGGAGGTATGACATGTGCAGCATGTGTGAATTCGGTAGAAGGCATTTTAAAAGATCTTCCTGGTGTTCGAAGAGCAGTAGTTGCTTTGGCCACATCATTGGGGGAAGTTGAATATGATTCAACTATAACCAGTAAAGACGATATAGTCAATGCAATTGAGGATGCTGGATTTGAAGCTTCATTTGTACAGAGCAGTGAGCAAGACAAAATTTTACTATCAGTTGCAGGCTTGTCGGGCGAGGTTGATGTACAGTTTTTGGAAGTCATTCTTAGCAACTTGAAAGGGGTGAAACAGTTTCTCTTTAACAGGATATCAGGAAAACTTGAAGTTGTTTTTGACCCAGAAGTTGTTGGTCCCAGATCCTTGGTGGATGAGATTGAAGGAAGAACCAACAGAAAATTTAAGTTGCATGTTATGAGCCCTTACACGAGATTAACATCTAAAGATGTTGAAGAAGCTACTAACATGTTTCGGCTTTTTATCTCCAGTCTGTTTCTCAGTGTACTGATCTTTCTTCTACGAGTAGTATGTCCTCATATTCCTTTAATCTACTCATTGTTACTGAGGCGCTGTGGGCCCTTCATCATGGATGATTGGTTAAAGTGGGCATTGGTGACTGTTGTGCAATTCATTATTGGAAAACGCTTTTACGTTGCAGCTGCTAGAGCTCTTCGAAATGGTTCAACTAACATGGATGTCTTGGTTGCTTTGGGTACCACGGCCTCTTATGTCTATTCTGTTTGTGCGCTTCTCTATGGTGCAGTCACCGGATTTTGGTCTCCTACTTACTTTGAAACAAGTGCTATGTTGATAACCTTTGTATTAATGGGAAAGTATTTGGAGTGTCTTGCCAAGGGGAAAACATCAGATGCCATCAAGAAGTTGGTAGAACTTGCTCCTGCAACTGCTCTATTGCTTATCCGAGATAAAGGTGGGAATTTGATAGAAGAAAAGGAAATTGATGCCCTGTTAATTCAACCTGGCGACGTGTTGAAAGTTCTTCCTGGTACAAAGATTCCAGCGGATGGCATTGTTGTTTGGGGTTCGAGTTATGTTAATGAGAGTATGGTTACTGGAGAGGCTATACCTGTTTTGAAGGAAGTTAACTCGCATGTTATTGGGGGTACAATTAATTTTCATGGAGTCCTTCACATTCAAGCAACGAAAGTAGGATCTGATGCAATTTTAAATCAGATTATTAGTTTGGTTGAGACAGCACAAATGTCTAAAGCCCCAATTCAGAAATTTGCTGATTTTGTAGCAAGTATATTCGTTCCAACAGTTGTTGCTATGGCATTGTGTACATTTTTTGCTTGGTACGTTGGAGGAATTCTTGGGGCTTATTCAGCAGATTGGCTCCCAGAAAATGGAAATTACTTTGTATTTTCCCTCATGTTTGCGATATCAGTGGTGGTGATTGCATGTCCTTGTGCACTAGGCTTGGCTACACCCACTGCTGTTATGGTTGCAACAGGGGTTGGAGCCAGCAATGGTGTCTTGATCAAAGGAGGTGATGCTTTGGAGAGGGCTCAAAAGGTTAAGTACGTGATATTCGATAAAACGGGCACACTAACTCAAGGGAAAGCAACCGTTACTACTGCCAAAGTCTTGACTGAAATTTCTCGAGGAGATTTTCTTAAGCTGGTTGCTTCAGCAGAGGTTAGCAGTGAACACCCCTTGGGAAAGGCTATAGTCGAGTATGCACGTCATTTCCATTTCATCGATGAGCAAAACCAAAGTAAAGAACCTTCTGGATGGCTTTTCGATGTTGCAGATTTCTCTGCATTGCCAGGCAAAGGAATCCAGTGCTTTATAGAGGGAAAAAGGATTCTTGTTGGCAACAGGAAGTTGATGTATGAAAATGGAATCTCCATAGCACCTAATGTAGATAATTTCGTTGTAGAGCTCGAAGAAAGCGCAACGACTGGTATTCTTGTTGCATATGATGACAGCTTAATTGGAATCTTGGGAATAGCAGATCCGCTGAAGAGAGAAGCTGCAGTTGTTGTTGAGGGTCTTGTGAAAATGGGAGTTTCTCCAGTCATGGTTACCGGGGATAATTGGAGAACAGCTCGGGCTGTCGCCAAAGAGGTTGGCATAAAAATCTCTCTCCATAAATTAATGTTGCACTCTGAAATGATCTCAAATTCTGGTCTACTTCGGTTTTCAAAGGCATCTCGATTAATTTGTGTTTGA 2628 43.53 MAPGLRDLQLTQVAADRRPPPIPAAAALPEDLEDVRLLDSYETPDENFPKIGETMRRLQVRVSGMTCAACSNSVEAALMGVNGVFMASVALLQNRADVVFDPNLVKDDDIKEAIEDAGFDADIIPETSSVGKKSHGTLVGQFTIGGMTCAACVNSVEGILKDLPGVRRAVVALATSLGEVEYDSTITSKDDIVNAIEDAGFEASFVQSSEQDKILLSVAGLSGEVDVQFLEVILSNLKGVKQFLFNRISGKLEVVFDPEVVGPRSLVDEIEGRTNRKFKLHVMSPYTRLTSKDVEEATNMFRLFISSLFLSVLIFLLRVVCPHIPLIYSLLLRRCGPFIMDDWLKWALVTVVQFIIGKRFYVAAARALRNGSTNMDVLVALGTTASYVYSVCALLYGAVTGFWSPTYFETSAMLITFVLMGKYLECLAKGKTSDAIKKLVELAPATALLLIRDKGGNLIEEKEIDALLIQPGDVLKVLPGTKIPADGIVVWGSSYVNESMVTGEAIPVLKEVNSHVIGGTINFHGVLHIQATKVGSDAILNQIISLVETAQMSKAPIQKFADFVASIFVPTVVAMALCTFFAWYVGGILGAYSADWLPENGNYFVFSLMFAISVVVIACPCALGLATPTAVMVATGVGASNGVLIKGGDALERAQKVKYVIFDKTGTLTQGKATVTTAKVLTEISRGDFLKLVASAEVSSEHPLGKAIVEYARHFHFIDEQNQSKEPSGWLFDVADFSALPGKGIQCFIEGKRILVGNRKLMYENGISIAPNVDNFVVELEESATTGILVAYDDSLIGILGIADPLKREAAVVVEGLVKMGVSPVMVTGDNWRTARAVAKEVGIKISLHKLMLHSEMISNSGLLRFSKASRLICV 875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 144158 149318 + Sed0017485.2 Sed10g0023 726527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0023 875 NCBIfam heavy metal translocating P-type ATPase 375 846 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Sed10g0023 875 Gene3D - 140 205 - -
Sed10g0023 875 FunFam Copper-exporting P-type ATPase A 137 206 - -
Sed10g0023 875 Pfam haloacid dehalogenase-like hydrolase 657 845 - -
Sed10g0023 875 SUPERFAMILY Calcium ATPase, transduction domain A 461 547 IPR008250 -
Sed10g0023 875 SUPERFAMILY HMA, heavy metal-associated domain 139 209 IPR036163 GO:0046872(InterPro)
Sed10g0023 875 SUPERFAMILY HMA, heavy metal-associated domain 52 125 IPR036163 GO:0046872(InterPro)
Sed10g0023 875 Gene3D - 429 551 - -
Sed10g0023 875 NCBIfam copper ion binding protein 59 121 IPR006122 GO:0005507(InterPro)
Sed10g0023 875 NCBIfam copper ion binding protein 141 203 IPR006122 GO:0005507(InterPro)
Sed10g0023 875 PRINTS P-type cation-transporting ATPase superfamily signature 820 830 - -
Sed10g0023 875 PRINTS P-type cation-transporting ATPase superfamily signature 661 675 - -
Sed10g0023 875 PRINTS P-type cation-transporting ATPase superfamily signature 798 809 - -
Sed10g0023 875 PRINTS P-type cation-transporting ATPase superfamily signature 497 511 - -
Sed10g0023 875 FunFam Copper-transporting ATPase RAN1 668 752 - -
Sed10g0023 875 ProSiteProfiles Heavy-metal-associated domain profile. 212 278 IPR006121 GO:0046872(InterPro)
Sed10g0023 875 SUPERFAMILY Calcium ATPase, transmembrane domain M 399 652 IPR023298 -
Sed10g0023 875 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 51 845 - -
Sed10g0023 875 CDD HMA 141 204 IPR006121 GO:0046872(InterPro)
Sed10g0023 875 CDD HMA 59 121 IPR006121 GO:0046872(InterPro)
Sed10g0023 875 Gene3D - 668 752 IPR023299 GO:0000166(InterPro)
Sed10g0023 875 Gene3D - 753 804 IPR023299 GO:0000166(InterPro)
Sed10g0023 875 ProSiteProfiles Heavy-metal-associated domain profile. 138 204 IPR006121 GO:0046872(InterPro)
Sed10g0023 875 Pfam E1-E2 ATPase 442 639 - -
Sed10g0023 875 ProSitePatterns Heavy-metal-associated domain. 144 173 IPR017969 GO:0046872(InterPro)
Sed10g0023 875 Gene3D - 55 127 - -
Sed10g0023 875 SUPERFAMILY HMA, heavy metal-associated domain 211 272 IPR036163 GO:0046872(InterPro)
Sed10g0023 875 ProSitePatterns E1-E2 ATPases phosphorylation site. 663 669 IPR018303 -
Sed10g0023 875 PRINTS Copper-transporting ATPase 1 signature 112 132 - -
Sed10g0023 875 PRINTS Copper-transporting ATPase 1 signature 83 106 - -
Sed10g0023 875 PRINTS Copper-transporting ATPase 1 signature 57 82 - -
Sed10g0023 875 FunFam Copper-exporting P-type ATPase A 54 124 - -
Sed10g0023 875 FunFam Copper-exporting P-type ATPase 753 804 - -
Sed10g0023 875 FunFam Copper-transporting ATPase 1, putative 429 551 - -
Sed10g0023 875 SUPERFAMILY HAD-like 656 846 IPR036412 -
Sed10g0023 875 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 663 802 IPR023299 GO:0000166(InterPro)
Sed10g0023 875 ProSiteProfiles Heavy-metal-associated domain profile. 56 122 IPR006121 GO:0046872(InterPro)
Sed10g0023 875 Pfam Heavy-metal-associated domain 60 120 IPR006121 GO:0046872(InterPro)
Sed10g0023 875 Pfam Heavy-metal-associated domain 142 202 IPR006121 GO:0046872(InterPro)
Sed10g0023 875 ProSitePatterns Heavy-metal-associated domain. 62 92 IPR017969 GO:0046872(InterPro)
Sed10g0023 875 Gene3D - 628 863 IPR023214 -
Sed10g0023 875 NCBIfam HAD-IC family P-type ATPase 414 844 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0023 Sed-Chr10:144158 Sed14g1639 Sed-Chr14:24568967 0.00E+00 dispersed
Sed10g0022 Sed-Chr10:144158 Sed10g0023 Sed-Chr10:144158 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0023 K17686 - csv:101205642 1465.29