Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0023 | ATGGCGCCGGGCCTTAGAGACCTGCAGCTTACCCAGGTCGCCGCCGACCGCCGCCCTCCGCCGATTCCCGCCGCGGCTGCCCTCCCCGAAGATCTCGAGGACGTGCGCTTGCTTGATTCCTACGAGACCCCGGATGAGAATTTCCCCAAAATTGGGGAAACTATGAGGAGGCTTCAGGTCCGAGTTTCTGGTATGACCTGCGCTGCTTGTTCTAATTCCGTCGAAGCTGCTCTCATGGGCGTCAATGGCGTTTTCATGGCTTCCGTTGCGTTGCTCCAGAACAGAGCTGACGTTGTTTTTGACCCCAACTTGGTTAAGGATGATGACATCAAAGAAGCTATAGAAGATGCTGGATTTGATGCTGACATTATCCCTGAAACCAGTTCAGTTGGAAAGAAGTCGCACGGAACACTGGTGGGTCAATTTACCATAGGAGGTATGACATGTGCAGCATGTGTGAATTCGGTAGAAGGCATTTTAAAAGATCTTCCTGGTGTTCGAAGAGCAGTAGTTGCTTTGGCCACATCATTGGGGGAAGTTGAATATGATTCAACTATAACCAGTAAAGACGATATAGTCAATGCAATTGAGGATGCTGGATTTGAAGCTTCATTTGTACAGAGCAGTGAGCAAGACAAAATTTTACTATCAGTTGCAGGCTTGTCGGGCGAGGTTGATGTACAGTTTTTGGAAGTCATTCTTAGCAACTTGAAAGGGGTGAAACAGTTTCTCTTTAACAGGATATCAGGAAAACTTGAAGTTGTTTTTGACCCAGAAGTTGTTGGTCCCAGATCCTTGGTGGATGAGATTGAAGGAAGAACCAACAGAAAATTTAAGTTGCATGTTATGAGCCCTTACACGAGATTAACATCTAAAGATGTTGAAGAAGCTACTAACATGTTTCGGCTTTTTATCTCCAGTCTGTTTCTCAGTGTACTGATCTTTCTTCTACGAGTAGTATGTCCTCATATTCCTTTAATCTACTCATTGTTACTGAGGCGCTGTGGGCCCTTCATCATGGATGATTGGTTAAAGTGGGCATTGGTGACTGTTGTGCAATTCATTATTGGAAAACGCTTTTACGTTGCAGCTGCTAGAGCTCTTCGAAATGGTTCAACTAACATGGATGTCTTGGTTGCTTTGGGTACCACGGCCTCTTATGTCTATTCTGTTTGTGCGCTTCTCTATGGTGCAGTCACCGGATTTTGGTCTCCTACTTACTTTGAAACAAGTGCTATGTTGATAACCTTTGTATTAATGGGAAAGTATTTGGAGTGTCTTGCCAAGGGGAAAACATCAGATGCCATCAAGAAGTTGGTAGAACTTGCTCCTGCAACTGCTCTATTGCTTATCCGAGATAAAGGTGGGAATTTGATAGAAGAAAAGGAAATTGATGCCCTGTTAATTCAACCTGGCGACGTGTTGAAAGTTCTTCCTGGTACAAAGATTCCAGCGGATGGCATTGTTGTTTGGGGTTCGAGTTATGTTAATGAGAGTATGGTTACTGGAGAGGCTATACCTGTTTTGAAGGAAGTTAACTCGCATGTTATTGGGGGTACAATTAATTTTCATGGAGTCCTTCACATTCAAGCAACGAAAGTAGGATCTGATGCAATTTTAAATCAGATTATTAGTTTGGTTGAGACAGCACAAATGTCTAAAGCCCCAATTCAGAAATTTGCTGATTTTGTAGCAAGTATATTCGTTCCAACAGTTGTTGCTATGGCATTGTGTACATTTTTTGCTTGGTACGTTGGAGGAATTCTTGGGGCTTATTCAGCAGATTGGCTCCCAGAAAATGGAAATTACTTTGTATTTTCCCTCATGTTTGCGATATCAGTGGTGGTGATTGCATGTCCTTGTGCACTAGGCTTGGCTACACCCACTGCTGTTATGGTTGCAACAGGGGTTGGAGCCAGCAATGGTGTCTTGATCAAAGGAGGTGATGCTTTGGAGAGGGCTCAAAAGGTTAAGTACGTGATATTCGATAAAACGGGCACACTAACTCAAGGGAAAGCAACCGTTACTACTGCCAAAGTCTTGACTGAAATTTCTCGAGGAGATTTTCTTAAGCTGGTTGCTTCAGCAGAGGTTAGCAGTGAACACCCCTTGGGAAAGGCTATAGTCGAGTATGCACGTCATTTCCATTTCATCGATGAGCAAAACCAAAGTAAAGAACCTTCTGGATGGCTTTTCGATGTTGCAGATTTCTCTGCATTGCCAGGCAAAGGAATCCAGTGCTTTATAGAGGGAAAAAGGATTCTTGTTGGCAACAGGAAGTTGATGTATGAAAATGGAATCTCCATAGCACCTAATGTAGATAATTTCGTTGTAGAGCTCGAAGAAAGCGCAACGACTGGTATTCTTGTTGCATATGATGACAGCTTAATTGGAATCTTGGGAATAGCAGATCCGCTGAAGAGAGAAGCTGCAGTTGTTGTTGAGGGTCTTGTGAAAATGGGAGTTTCTCCAGTCATGGTTACCGGGGATAATTGGAGAACAGCTCGGGCTGTCGCCAAAGAGGTTGGCATAAAAATCTCTCTCCATAAATTAATGTTGCACTCTGAAATGATCTCAAATTCTGGTCTACTTCGGTTTTCAAAGGCATCTCGATTAATTTGTGTTTGA | 2628 | 43.53 | MAPGLRDLQLTQVAADRRPPPIPAAAALPEDLEDVRLLDSYETPDENFPKIGETMRRLQVRVSGMTCAACSNSVEAALMGVNGVFMASVALLQNRADVVFDPNLVKDDDIKEAIEDAGFDADIIPETSSVGKKSHGTLVGQFTIGGMTCAACVNSVEGILKDLPGVRRAVVALATSLGEVEYDSTITSKDDIVNAIEDAGFEASFVQSSEQDKILLSVAGLSGEVDVQFLEVILSNLKGVKQFLFNRISGKLEVVFDPEVVGPRSLVDEIEGRTNRKFKLHVMSPYTRLTSKDVEEATNMFRLFISSLFLSVLIFLLRVVCPHIPLIYSLLLRRCGPFIMDDWLKWALVTVVQFIIGKRFYVAAARALRNGSTNMDVLVALGTTASYVYSVCALLYGAVTGFWSPTYFETSAMLITFVLMGKYLECLAKGKTSDAIKKLVELAPATALLLIRDKGGNLIEEKEIDALLIQPGDVLKVLPGTKIPADGIVVWGSSYVNESMVTGEAIPVLKEVNSHVIGGTINFHGVLHIQATKVGSDAILNQIISLVETAQMSKAPIQKFADFVASIFVPTVVAMALCTFFAWYVGGILGAYSADWLPENGNYFVFSLMFAISVVVIACPCALGLATPTAVMVATGVGASNGVLIKGGDALERAQKVKYVIFDKTGTLTQGKATVTTAKVLTEISRGDFLKLVASAEVSSEHPLGKAIVEYARHFHFIDEQNQSKEPSGWLFDVADFSALPGKGIQCFIEGKRILVGNRKLMYENGISIAPNVDNFVVELEESATTGILVAYDDSLIGILGIADPLKREAAVVVEGLVKMGVSPVMVTGDNWRTARAVAKEVGIKISLHKLMLHSEMISNSGLLRFSKASRLICV | 875 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 144158 | 149318 | + | Sed0017485.2 | Sed10g0023 | 726527 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0023 | 875 | NCBIfam | heavy metal translocating P-type ATPase | 375 | 846 | IPR027256 | GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro) | |
Sed10g0023 | 875 | Gene3D | - | 140 | 205 | - | - | |
Sed10g0023 | 875 | FunFam | Copper-exporting P-type ATPase A | 137 | 206 | - | - | |
Sed10g0023 | 875 | Pfam | haloacid dehalogenase-like hydrolase | 657 | 845 | - | - | |
Sed10g0023 | 875 | SUPERFAMILY | Calcium ATPase, transduction domain A | 461 | 547 | IPR008250 | - | |
Sed10g0023 | 875 | SUPERFAMILY | HMA, heavy metal-associated domain | 139 | 209 | IPR036163 | GO:0046872(InterPro) | |
Sed10g0023 | 875 | SUPERFAMILY | HMA, heavy metal-associated domain | 52 | 125 | IPR036163 | GO:0046872(InterPro) | |
Sed10g0023 | 875 | Gene3D | - | 429 | 551 | - | - | |
Sed10g0023 | 875 | NCBIfam | copper ion binding protein | 59 | 121 | IPR006122 | GO:0005507(InterPro) | |
Sed10g0023 | 875 | NCBIfam | copper ion binding protein | 141 | 203 | IPR006122 | GO:0005507(InterPro) | |
Sed10g0023 | 875 | PRINTS | P-type cation-transporting ATPase superfamily signature | 820 | 830 | - | - | |
Sed10g0023 | 875 | PRINTS | P-type cation-transporting ATPase superfamily signature | 661 | 675 | - | - | |
Sed10g0023 | 875 | PRINTS | P-type cation-transporting ATPase superfamily signature | 798 | 809 | - | - | |
Sed10g0023 | 875 | PRINTS | P-type cation-transporting ATPase superfamily signature | 497 | 511 | - | - | |
Sed10g0023 | 875 | FunFam | Copper-transporting ATPase RAN1 | 668 | 752 | - | - | |
Sed10g0023 | 875 | ProSiteProfiles | Heavy-metal-associated domain profile. | 212 | 278 | IPR006121 | GO:0046872(InterPro) | |
Sed10g0023 | 875 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 399 | 652 | IPR023298 | - | |
Sed10g0023 | 875 | PANTHER | P-TYPE CATION-TRANSPORTING ATPASE | 51 | 845 | - | - | |
Sed10g0023 | 875 | CDD | HMA | 141 | 204 | IPR006121 | GO:0046872(InterPro) | |
Sed10g0023 | 875 | CDD | HMA | 59 | 121 | IPR006121 | GO:0046872(InterPro) | |
Sed10g0023 | 875 | Gene3D | - | 668 | 752 | IPR023299 | GO:0000166(InterPro) | |
Sed10g0023 | 875 | Gene3D | - | 753 | 804 | IPR023299 | GO:0000166(InterPro) | |
Sed10g0023 | 875 | ProSiteProfiles | Heavy-metal-associated domain profile. | 138 | 204 | IPR006121 | GO:0046872(InterPro) | |
Sed10g0023 | 875 | Pfam | E1-E2 ATPase | 442 | 639 | - | - | |
Sed10g0023 | 875 | ProSitePatterns | Heavy-metal-associated domain. | 144 | 173 | IPR017969 | GO:0046872(InterPro) | |
Sed10g0023 | 875 | Gene3D | - | 55 | 127 | - | - | |
Sed10g0023 | 875 | SUPERFAMILY | HMA, heavy metal-associated domain | 211 | 272 | IPR036163 | GO:0046872(InterPro) | |
Sed10g0023 | 875 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 663 | 669 | IPR018303 | - | |
Sed10g0023 | 875 | PRINTS | Copper-transporting ATPase 1 signature | 112 | 132 | - | - | |
Sed10g0023 | 875 | PRINTS | Copper-transporting ATPase 1 signature | 83 | 106 | - | - | |
Sed10g0023 | 875 | PRINTS | Copper-transporting ATPase 1 signature | 57 | 82 | - | - | |
Sed10g0023 | 875 | FunFam | Copper-exporting P-type ATPase A | 54 | 124 | - | - | |
Sed10g0023 | 875 | FunFam | Copper-exporting P-type ATPase | 753 | 804 | - | - | |
Sed10g0023 | 875 | FunFam | Copper-transporting ATPase 1, putative | 429 | 551 | - | - | |
Sed10g0023 | 875 | SUPERFAMILY | HAD-like | 656 | 846 | IPR036412 | - | |
Sed10g0023 | 875 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 663 | 802 | IPR023299 | GO:0000166(InterPro) | |
Sed10g0023 | 875 | ProSiteProfiles | Heavy-metal-associated domain profile. | 56 | 122 | IPR006121 | GO:0046872(InterPro) | |
Sed10g0023 | 875 | Pfam | Heavy-metal-associated domain | 60 | 120 | IPR006121 | GO:0046872(InterPro) | |
Sed10g0023 | 875 | Pfam | Heavy-metal-associated domain | 142 | 202 | IPR006121 | GO:0046872(InterPro) | |
Sed10g0023 | 875 | ProSitePatterns | Heavy-metal-associated domain. | 62 | 92 | IPR017969 | GO:0046872(InterPro) | |
Sed10g0023 | 875 | Gene3D | - | 628 | 863 | IPR023214 | - | |
Sed10g0023 | 875 | NCBIfam | HAD-IC family P-type ATPase | 414 | 844 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g0023 | Sed-Chr10:144158 | Sed14g1639 | Sed-Chr14:24568967 | 0.00E+00 | dispersed | |
Sed10g0022 | Sed-Chr10:144158 | Sed10g0023 | Sed-Chr10:144158 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0023 | K17686 | - | csv:101205642 | 1465.29 |