Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0041 ATGGATACAGCAAGAAGTTGGTTTCAGAAGTTCCAATATAAAGAAAAGAAGGAAACTAAAAATGACAACGAGGTTCAAGAGGCACCGTCAAGTGCAACGAAACAGAAAGTTGAAGTTGCCAAGCATTATATTGAAAACCATTATAAATCTCAAATGAAGTCATTGCAAGATAGGAAGGAGAGGCGTTGGGTGTTGGAGAGGAGGCTTGCTGATGCCGATGCTTCTGAGGAAGACCAAATGAACGTGTTGAAGTATTTAGAGCAGAAGGAAACAGAATACATGCGTCTTCGTAGACATAAAATGGGAGTCGAGGACTTTGAGCTTTTGACAATTATAGGAAGGGGTGCATTTGGGGAGGTCAGACTTTGTAGAGAAAAAACCACAGGTCACGTGTATGCAATGAAGAAGCTTAAGAAATCTGAGATGCTTCGCAGGGGACAGGTGGAACATGTCAAAGCTGAAAGAAATCTTCTAGCGGAGGTTGACAGTGCCTACATTGTTAAGTTATACTGCTCCTTTCAGGATGAAGAATTTTTGTATCTTATAATGCAATATCTTCCTGGAGGTGATATGATGACTCTGTTAATGCGCAAGGATATTTTGTCAGAGGATGAGACTAGATTTTATGTTGGTGAAACAGTCCTTGCTATAGAGTCCATTCACAAGCATAATTATATTCACAGAGACATCAAGCCTGATAATTTACTGCTTGATCGTTATGGTCACATGAAACTCTCAGATTTTGGGTTGTGTAAACCCTTGGAATCTAGTAGTTTCCCTAATCTCACTGAGCAAGAAAATGTAATGGATAAGAATGTCAGATCTTCCGCAGAAAATGATAGTCATTTCGATGTATCAAAACAAACACAACAAGAACAATTGTTACATTGGCAAAAGAACAGACGGACCCTGGCTTATTCAGCTGTTGGAACCCCAGACTATATTGCCCCAGAAGTGTTATTGAGGAAGGGTTATGGAATGGAGTGTGACTGGTGGTCCCTCGGCGCAATTATGTACGAGATGCTCGTGGGGTTTCCACCTTTCTATTCTAATGATTCAATGACTACATGTAGAAAGATTATAAACTGGAGAACTCATCTGAAATTCCCTATAGACGCAAAACTTTCCATTGAGGCTAAAGATCTTATTTGCAAACTTCTATGCAATGTTGAGCAAAGGATTGGAACCAAAGGGGCTAAAGAAATTAAGGCACATCCATGGTTTAAAGGTATTCAATGGGATAAATTATATCAAATGGAAGCTGTTATCATCCCCGAGATCCATGATGAGTTAGATACTCGAAATTTTGAGGAGTATGAAGAGCTGGGCGTGCCAGGTCAAACTCCATCAAAGTCTGGTCCTCTGAGAAAGAAGCTTTCACCCAAGGATGTGAACTTTGTCGGTTATACGTACAAGAATTTCGAAATCGTCAACGAACACCACTTATCTGGAATTACAAAGTCATTTGTGTCATGTAAGATAATGTCTATTAAGAGAAAGAGTGAGATAATTAATTTATCATTCACTTTCTCATCCACTAATAGTAACAAATTTTATAATGAATTACAAATGTTATCATAA 1581 38.77 MDTARSWFQKFQYKEKKETKNDNEVQEAPSSATKQKVEVAKHYIENHYKSQMKSLQDRKERRWVLERRLADADASEEDQMNVLKYLEQKETEYMRLRRHKMGVEDFELLTIIGRGAFGEVRLCREKTTGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAYIVKLYCSFQDEEFLYLIMQYLPGGDMMTLLMRKDILSEDETRFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHMKLSDFGLCKPLESSSFPNLTEQENVMDKNVRSSAENDSHFDVSKQTQQEQLLHWQKNRRTLAYSAVGTPDYIAPEVLLRKGYGMECDWWSLGAIMYEMLVGFPPFYSNDSMTTCRKIINWRTHLKFPIDAKLSIEAKDLICKLLCNVEQRIGTKGAKEIKAHPWFKGIQWDKLYQMEAVIIPEIHDELDTRNFEEYEELGVPGQTPSKSGPLRKKLSPKDVNFVGYTYKNFEIVNEHHLSGITKSFVSCKIMSIKRKSEIINLSFTFSSTNSNKFYNELQMLS 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 252420 260228 + Sed0014365.1 Sed10g0041 726545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0041 526 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 476 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Sed10g0041 526 Pfam Protein kinase C terminal domain 428 471 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0041 526 FunFam Non-specific serine/threonine protein kinase 77 189 - -
Sed10g0041 526 SUPERFAMILY Protein kinase-like (PK-like) 86 455 IPR011009 -
Sed10g0041 526 FunFam Non-specific serine/threonine protein kinase 190 257 - -
Sed10g0041 526 CDD MobB_NDR_LATS-like 40 101 - -
Sed10g0041 526 FunFam Non-specific serine/threonine protein kinase 307 426 - -
Sed10g0041 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0041 526 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524(InterPro)
Sed10g0041 526 SMART pkinase_C_6 409 473 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0041 526 Gene3D Phosphorylase Kinase; domain 1 77 189 - -
Sed10g0041 526 CDD STKc_NDR_like 104 472 - -
Sed10g0041 526 Pfam Protein kinase domain 287 408 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0041 526 Pfam Protein kinase domain 107 259 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0041 526 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 481 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0041 526 Gene3D Transferase(Phosphotransferase) domain 1 190 257 - -
Sed10g0041 526 Gene3D Transferase(Phosphotransferase) domain 1 299 428 - -
Sed10g0041 526 SMART serkin_6 106 408 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0041 526 ProSiteProfiles Protein kinase domain profile. 106 408 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0041 Sed-Chr10:252420 Sed14g1669 Sed-Chr14:24779204 5.30E-246 dispersed
Sed10g0041 Sed-Chr10:252420 Sed14g1668 Sed-Chr14:24779204 4.30E-264 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79797 PF00069 Pkinase 4.30E-64 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0041 K08790 - csv:101208438 917.146