Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0045 ATGGTCGGAGTTTTTGAAGTCGGAGCTGTCCCCTACAGCCCGGACGGTTGGGGTCCGCCGGACTCCACCGCCTCTCTCGCCGCTTCTTCCAACCTCCCTCTCAACGTTCCCTTCGCCCCGTTCTCTCGCTCCGACAAGCTCGGCCGGATCGCCGATTGGACTCGAACCATGAACAACCCTGCCCGCCCCAAGACCGCTTCCGACTCCGTCTTCGATTTCACCAACGACGATTCCTTCCCGACCAACGGCGACGAGGATATGTCCTTCCGGTTGGTTGATGGAAATCCCCCTCCGCGCCCTAAATTCGGCCCTAAATGGCGATTCAACCAGCAAAGGACGCAGCTGCCTCAGCGCCGCGACGAAGAGGTCGAGGCCAAAAAGCGCGAGGCCGAGAAGGAGCGGGCTCGCCGTGATCGTCTTTACAACAACAACAGGAATAATGTCAACGCCTCCCGTCGTGAAGCTGCTGTGTTCAAATCCTCCGTCGAAATCCAACCGGAATGGAACATGCTGGATCAGATTCCCTTCTCCAGTTTCTCCAAGCTCTCCTTCTCTGTTCCTGAACCCGAAGATCTCCTCCTCTGCGGTGGGCTCGAGTTCTATGATCGAGCTTTCGATCGAGTCACTCCGAAGAACGAGCGCCGTCTTGAGCGATTCAAGAATCGTAACTTCTTCAAGGTAACTACTACTGATGATCCTGTAATTCGTCGTCTTGCTAATGAAGATAAGGCCACCGTTTTCGCTACCGATGCGATCCTTTCTACCCTTATGTGTGCTACGAGGTCTGTTTATTCATGGGATATTGTTGTTCAACGTGTTGGGAACAAGCTTTTCTTTGATAAGAGAGATGGGTCGCAGCTTGATTTGCTTGCTGTCCATGAGACTTCTCAAGAGCCCTTACCGGAGGCGAAGGACGATATCAATTCAGCCTACTCACTGAGCGTTGAAGCTACTTACATTAATCAGAATTTCTCCCAGCAAGTTTTAGTTAGGGATGGAAATAAGGTGGCATTTGATGAGCCAAACCCATTTGCAAATGAGGGAGAAGAGGTTGCTTCTGTTGCTTATAGGTATAGGAGGTGGAAACTTGATGATGATATGTATCTCGTGGCCAGGTGTGAGGTTCAGAGTGTGATGGAGGTTAATAAGCAGAGATCATTCTTGACTTTGAATGCTCTTAATGAATTTGATCCCAAGTATTCTGGTGTTGATTGGAGGCAGAAATTGGAGACACAGAGAGGTGCTGTTTTGGCCACTGAGTTGAAGAACAATGCTAATAAATTGGCAAAATGGACTGCTCAAGCCCTGTTGGCTAATGCAGATATGATGAAGTTGGGGTATGTCTCTAGGGTTCATCCTCGTGATCACTTCAACCATGTCATCTTAGCTGTGGTTGGATATAAGCCTAAGGATTTTGCAACTCAAATTAACTTGAATACATCTAACATGTGGGGTATTGTCAAATCCATTGTGGATTTGTGCATGAAACTGAAAGAAGGCAAGTATGTTTTGGTTAAGGACCCAACAAAACCACAGGTTAGGATCTATGAAGTTCCTGCAGATGCATTTGAGAATGATTATGTTGAGGAGCCATTGGCTGAGGAGGATCAAGTGCAACCTCCAGAAGAAGAAGATGAAAATGGCGCCACTGCTAATGCAGGGACAGATGATGCCGAAGAGAAGGTTGATAATACTGCTCAAGCTTAA 1707 48.33 MVGVFEVGAVPYSPDGWGPPDSTASLAASSNLPLNVPFAPFSRSDKLGRIADWTRTMNNPARPKTASDSVFDFTNDDSFPTNGDEDMSFRLVDGNPPPRPKFGPKWRFNQQRTQLPQRRDEEVEAKKREAEKERARRDRLYNNNRNNVNASRREAAVFKSSVEIQPEWNMLDQIPFSSFSKLSFSVPEPEDLLLCGGLEFYDRAFDRVTPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDAILSTLMCATRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLAVHETSQEPLPEAKDDINSAYSLSVEATYINQNFSQQVLVRDGNKVAFDEPNPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVQSVMEVNKQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLANADMMKLGYVSRVHPRDHFNHVILAVVGYKPKDFATQINLNTSNMWGIVKSIVDLCMKLKEGKYVLVKDPTKPQVRIYEVPADAFENDYVEEPLAEEDQVQPPEEEDENGATANAGTDDAEEKVDNTAQA 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 293366 295693 - Sed0021745.1 Sed10g0045 726549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0045 568 PIRSF Transl_init_eIF3d 1 547 IPR007783 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed10g0045 568 MobiDBLite consensus disorder prediction 58 82 - -
Sed10g0045 568 MobiDBLite consensus disorder prediction 57 137 - -
Sed10g0045 568 Hamap Eukaryotic translation initiation factor 3 subunit D [EIF3D]. 3 529 IPR007783 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed10g0045 568 Pfam Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 6 517 IPR007783 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed10g0045 568 MobiDBLite consensus disorder prediction 526 568 - -
Sed10g0045 568 MobiDBLite consensus disorder prediction 526 543 - -
Sed10g0045 568 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 4 541 IPR007783 GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(PANTHER)
Sed10g0045 568 MobiDBLite consensus disorder prediction 114 137 - -
Sed10g0045 568 Coils Coil 118 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0045 Sed-Chr10:293366 Sed14g1670 Sed-Chr14:24788845 4.10E-305 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0045 K03251 - csv:101208923 1034.25