Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0055 ATGGGGTTGGTTCAAACCCTGAAATTATTGATTCTGTTGCTTCTACTGATAATTTGTGGGTATGTACAATTTGGAGAATCCAAATCCAATTCCCTTTTCATTAACTGTGGCTCAAGTTTAAATGAAACTGTTGATGGTCGGAAATGGATTGGTGACCTGAATTCTGAAGGGGACTTTTCTGTGGGTAATCTTGGTGCTAATATCAATGTTTCCACAGCCACTTTAAATGGCAATTCAGTCTTTGAGTCACTGTATAAAACTGCTCGGGTTTTTACCAATTCTGTAAACTATACTTTCAAAGGCGTTTGGGGTACCCACTTTGTAAGGCTCCATTTCTGTCCCTTCCCTTTTGTGAACCTCAATGTGAATGAGTCATCATTTTCTGTCTCAGCTAATGGTCTTAAACTGGTTTCAGAGTTGAGTGTTCCCAATGAAATTGCATATAAGAATATGGAGTTTCAGCGTTCTGGTGTCAATTCAAGTTCATTCTCTTTGATTAAAGAGTTCATTATTTCTGTCAATTCAGATGCATTTGTTCTTGAGTTCTTTCCTTCTGAGGAATCATTTGGGTTCATCAATGCTATTGAAATCATCCCCCTGGTGGATGAGCTTTTCGCAGGTTCGATTGATAAGGTGGGTGGGAATGCTGTTAGTTTGAATGTGAGTGAAAGGGGAACTGAAACTATGTACAGATTGAATGTTGGAGGTCCGGAGATCAAGCCTGGTCATGATTCAAATCTTTGGAGAATGTGGGAAGTGGACTCGAGTTATATGATTACTGCAGATGCTGGGTCTGAGATTCATAACAGTTCTAATATAACCTATGCTTCCGTGAATGACTCTATTGTAGCTCCTCTTCCTGTGTATGAAACAGCCAGAACGATGTTCGAGACTGAAGTGCTTGAGAAAAGGTTCAACATGTCGTGGAAATTTGAGGTTCATCCCGGTTTCGATTATTTGATTAGATTGCATTTCTGTGAGCTGGTGTTTGAGAAGGCAAGAGATAGGGTTTTCAAGATTTACATTAACAACAGGACTGCAGTTGAGAGTTTTGATCTGTTTGTTCGAGCCGGGGGAAGAAACAAAGCATATCATGTGGATTTTCTTGAACCAATATCATCCAAAATCAACACCCTCTGGATTCAACTAGGCCCTGATTCGGCAGTGGGTGCTGCAGGAACAGATGCTCTCTTGAATGGTCTGGAAATCTTTAAGCTGAGTCAAAATGGGAATCTTGCATACATTGACAGATTTAATGCCTTGGAGGAATCTACGAGAAACTCGAAGTCTCAAATTCTTTGGATAGGCATTGGAGCAGGTTTAGCATCGGTTATTTTTCTTGCAGCTATCACTACTCTCATAATCTATTTCTGCAGAATTCGAAGAAGGAATTTTACTAAGAAGAACTCTTCTAGGTGGAGAGCAGGATCCAGTCATGGGGCCTCCGTCACTAGCACTTATGCCAGAGGGTCCTTGGGGGGAGGCCAAAGTGCATTTGGGACCATGCCATCTATCAGAGTTGGCAAATGGTTTACATTAGCTGAGATTCTTGCAGCAACAGATAACTTTGATGAAGCTTTGCAGATTGGAGTTGGGGGTTTTGGTAAGGTCTACAGAGGGGAGATTGATGGTGGTACTCTTGTGGCCATCAAGAGAGCCAACCCACAGTCTCAGCAGGGACTTAACGAGTTCGAGACCGAAATCGAAATGCTTTCTAAACTCAGGCATAGGCATCTGGTCTCCATGATCGGGTTTTGTGACGAGCGAAAGGAAATGATCTTGGTTTATGAATATATGGGGAATGGAACTCTTAGAAGCCATCTTTTTGGGAGTAATCTCCCACCTTTGACTTGGAAGCAGCGATTGGAAGTGTGCATTGGTGCAGCCAGGGGACTCCATTACCTTCACACAGGAGCTGAGAGAGGAATAATCCACAGAGATGTGAAGACAACGAACATTCTCTTGGATGGGAAATTTGTAGCAAAAATGTCTGACTTTGGTCTTTCGAAAACAGGTCCTTCTTTGGACCATACCCATGTTAGTACTGCAGTTAAGGGAAGCTTTGGCTACCTTGATCCGGAGTATTTCAGGCGCCAGCAGCTGAGTGAAAAATCTGATGTCTATTCTTTTGGCGTGGTATTGTTAGAAGTTGTTTGTGCTCGAGCTGTTATAAACCCAAGCTTGCCTAAGGATCAGATAAATCTTGCAGAATGGGCAATGAAATGGCAACGCAAAAAGTTGCTGCACACCATCATTGACCCACATCTCAAAGACAAATATTGTCCTGATTCTCTGAAAACATTTGGGGAGATAGCAGAAAAATGCCTTGCTGATGAAGGGAAGATTCGTCCGACAATGGGGGAAGTTCTATGGCACCTAGAATATTCTCTGCAACTCCATGATGCTTGGATTCGCACAAATGAAGCAGAATGTTCTTGCACAATAAACTCTGAAGGAGCACAGCCTGAGGAGGAACAAAGGCCAGAGCGTGATGGGGAAGATGAAGGCTTGAACCCCAACTGA 2523 42.61 MGLVQTLKLLILLLLLIICGYVQFGESKSNSLFINCGSSLNETVDGRKWIGDLNSEGDFSVGNLGANINVSTATLNGNSVFESLYKTARVFTNSVNYTFKGVWGTHFVRLHFCPFPFVNLNVNESSFSVSANGLKLVSELSVPNEIAYKNMEFQRSGVNSSSFSLIKEFIISVNSDAFVLEFFPSEESFGFINAIEIIPLVDELFAGSIDKVGGNAVSLNVSERGTETMYRLNVGGPEIKPGHDSNLWRMWEVDSSYMITADAGSEIHNSSNITYASVNDSIVAPLPVYETARTMFETEVLEKRFNMSWKFEVHPGFDYLIRLHFCELVFEKARDRVFKIYINNRTAVESFDLFVRAGGRNKAYHVDFLEPISSKINTLWIQLGPDSAVGAAGTDALLNGLEIFKLSQNGNLAYIDRFNALEESTRNSKSQILWIGIGAGLASVIFLAAITTLIIYFCRIRRRNFTKKNSSRWRAGSSHGASVTSTYARGSLGGGQSAFGTMPSIRVGKWFTLAEILAATDNFDEALQIGVGGFGKVYRGEIDGGTLVAIKRANPQSQQGLNEFETEIEMLSKLRHRHLVSMIGFCDERKEMILVYEYMGNGTLRSHLFGSNLPPLTWKQRLEVCIGAARGLHYLHTGAERGIIHRDVKTTNILLDGKFVAKMSDFGLSKTGPSLDHTHVSTAVKGSFGYLDPEYFRRQQLSEKSDVYSFGVVLLEVVCARAVINPSLPKDQINLAEWAMKWQRKKLLHTIIDPHLKDKYCPDSLKTFGEIAEKCLADEGKIRPTMGEVLWHLEYSLQLHDAWIRTNEAECSCTINSEGAQPEEEQRPERDGEDEGLNPN 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 354381 357873 - Sed0024416.1 Sed10g0055 726559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0055 840 Gene3D Phosphorylase Kinase; domain 1 501 598 - -
Sed10g0055 840 Pfam Malectin-like domain 34 405 IPR024788 -
Sed10g0055 840 Gene3D Transferase(Phosphotransferase) domain 1 599 816 - -
Sed10g0055 840 SMART serkin_6 523 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0055 840 Pfam Protein tyrosine and serine/threonine kinase 528 790 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0055 840 CDD STKc_IRAK 529 794 - -
Sed10g0055 840 ProSiteProfiles Protein kinase domain profile. 523 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0055 840 SUPERFAMILY Protein kinase-like (PK-like) 501 795 IPR011009 -
Sed10g0055 840 MobiDBLite consensus disorder prediction 822 840 - -
Sed10g0055 840 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524(InterPro)
Sed10g0055 840 FunFam receptor-like protein kinase FERONIA 494 598 - -
Sed10g0055 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0055 840 PANTHER OS07G0166700 PROTEIN 511 800 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Sed10g0055 840 FunFam Receptor-like protein kinase FERONIA 599 812 - -
Sed10g0055 840 MobiDBLite consensus disorder prediction 816 840 - -
Sed10g0055 840 FunFam FERONIA receptor-like kinase 31 201 - -
Sed10g0055 840 Gene3D - 28 200 - -
Sed10g0055 840 Gene3D - 224 408 - -
Sed10g0055 840 FunFam Receptor-like protein kinase FERONIA 225 408 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0055 Sed-Chr10:354381 Sed14g0568 Sed-Chr14:5681470 2.30E-171 dispersed
Sed12g2348 Sed-Chr12:33435369 Sed10g0055 Sed-Chr10:354381 4.30E-59 dispersed
Sed14g0720 Sed-Chr14:7423827 Sed10g0055 Sed-Chr10:354381 1.50E-42 dispersed
Sed14g0721 Sed-Chr14:7423827 Sed10g0055 Sed-Chr10:354381 1.50E-42 dispersed
Sed10g0055 Sed-Chr10:354381 Sed07g2623 Sed-Chr7:41685629 5.90E-183 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79798 PF12819 Malectin_like 2.50E-30 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0055 - - - 0.0